Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018402746.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_5806.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 630

Length: 1050
ACGTcount: A:0.41, C:0.13, G:0.13, T:0.33


Found at i:975 original size:171 final size:171

Alignment explanation


    Indices: 643--1050  Score: 412
    Period size: 171  Copynumber: 2.4  Consensus size: 171

        633 AAGCAAGCAT

                   *   *        *          *             *           *    *  
        643 TCAATTACAATATATTTTAAAC-AAAA-ATGCAAAACAATTCAACTTAAAATCAATTGTGAGGTT
          1 TCAATTATAATGTATTTTAACCAAAAACAT-AAAAAC-ATTCAACATAAAATCAATTATGAGATT

                      *    *                 *                               
        706 ATAAAACCATTTAAAGCGAGAAATAAAGTTTCGGAAGGCATGAGTAAATATAAATGGATTTTTCT
         64 ATAAAACCATGTAAAACGAGAAATAAAGTTTCGAAAGGCATGAGTAAATATAAATGGATTTTTCT

              *                       *       *        
        771 TGGAAATGAATCACGTTTTCTTCATATTTCTTGAGGTAAACAC
        129 TGCAAATGAATCACGTTTTCTTCATACTTCTTGAAGTAAACAC

                       * *       **    *                      *              
        814 TCAATTATAATTTGTTTTAACTGAAAATATAAAAACATTCAACATAAAATTAATTATGAGATTAT
          1 TCAATTATAATGTATTTTAACCAAAAACATAAAAACATTCAACATAAAATCAATTATGAGATTAT

                              *     *      *      *  *    *                  
        879 AAAACCATGTAAAACGAGTAATAAGGCTTT-TAAAGGCTTGGGTAATTATAAATGGATTTTTCTT
         66 AAAACCATGTAAAACGAGAAATAAAG-TTTCGAAAGGCATGAGTAAATATAAATGGATTTTTCTT

              *    *  **            * *            *   *
        943 GCCAATGGATGGC-TTTTGCATT-GTGCTTCTTGAAGTAGACAT
        130 GCAAATGAATCACGTTTT-C-TTCATACTTCTTGAAGTAAACAC

                                               *    *  *                     
        985 TCAATTATAATGTATTTTAACCAAAAACATAAAAAAATTCTACCTAAAATCAATTATGAGATTAT
          1 TCAATTATAATGTATTTTAACCAAAAACATAAAAACATTCAACATAAAATCAATTATGAGATTAT

             
       1050 A
         66 A


Statistics
Matches: 193,  Mismatches: 39, Indels: 10
        0.80            0.16        0.04

Matches are distributed among these distances:
 170    4  0.02
 171  173  0.90
 172   14  0.07
 173    2  0.01

ACGTcount: A:0.41, C:0.12, G:0.13, T:0.34


Consensus pattern (171 bp):   
TCAATTATAATGTATTTTAACCAAAAACATAAAAACATTCAACATAAAATCAATTATGAGATTAT
AAAACCATGTAAAACGAGAAATAAAGTTTCGAAAGGCATGAGTAAATATAAATGGATTTTTCTTG
CAAATGAATCACGTTTTCTTCATACTTCTTGAAGTAAACAC
Done.