Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018402749.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_5809.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 685

Length: 1142
ACGTcount: A:0.33, C:0.10, G:0.12, T:0.30

Warning! 183 characters in sequence are not A, C, G, or T


Found at i:668 original size:133 final size:132

Alignment explanation


    Indices: 438--676  Score: 300
    Period size: 133  Copynumber: 1.8  Consensus size: 132

        428 GCATTAAAAT

                          *      *          *                        * **    
        438 ATAATTTTTTTAACTAAAAATGTAAAAAAATTTAAGTTAAAATCAATAATGAGATTATAGCACCA
          1 ATAATTTTTTTAACAAAAAATATAAAAAAATTCAAGTTAAAATCAATAATGAGATTACAAAACCA

                        *             *        *                             
        503 TTTAAAACAAGTGATAAGGCTTTGTAGGGCATGGGTGACTAATAATTTCTAAGGCAAACAATCAA
         66 TTTAAAACAAGTAATAAGGCTTTGTAAGGCATGGGCGACTAATAATTTCTAAGGCAAACAATCAA

              
        568 TA
        131 TA

                                                        *   *               *
        570 ATAATTTGTTTTAACAAAAAATATAAAAAAATTCAAGTTAAAATTAATTATGAGATTACAAAACT
          1 ATAATTT-TTTTAACAAAAAATATAAAAAAATTCAAGTTAAAATCAATAATGAGATTACAAAACC

                   * *       **          *             
        635 ATTTAAAGCGAGTAATATTGCTTT-TGAATGCATGGGCGACTA
         65 ATTTAAAACAAGTAATAAGGCTTTGT-AAGGCATGGGCGACTA

        677 TAAATAGACT


Statistics
Matches: 88,  Mismatches: 17, Indels: 3
        0.81            0.16        0.03

Matches are distributed among these distances:
 132    8  0.09
 133   80  0.91

ACGTcount: A:0.45, C:0.09, G:0.14, T:0.32


Consensus pattern (132 bp):   
ATAATTTTTTTAACAAAAAATATAAAAAAATTCAAGTTAAAATCAATAATGAGATTACAAAACCA
TTTAAAACAAGTAATAAGGCTTTGTAAGGCATGGGCGACTAATAATTTCTAAGGCAAACAATCAA
TA
Done.