Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018402759.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_5818.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 904

Length: 1508
ACGTcount: A:0.36, C:0.11, G:0.15, T:0.36

Warning! 20 characters in sequence are not A, C, G, or T


Found at i:1128 original size:30 final size:30

Alignment explanation


    Indices: 1035--1221  Score: 197
    Period size: 30  Copynumber: 6.4  Consensus size: 30

       1025 CTTTAACATG

                                     *     
       1035 TTTGTCTTAATTTAGAC-AAAAAAACT-TGT
          1 TTTGTCTTAATTTAGACAAAAAAAAATAT-T

              *               *  *   *   *
       1064 TTGGTCTTAATTTAG--ATAAGAAAGTATG
          1 TTTGTCTTAATTTAGACAAAAAAAAATATT

                                          
       1092 TTTGTCTTAATTTAGACAAAAAAAAATATT
          1 TTTGTCTTAATTTAGACAAAAAAAAATATT

                                          
       1122 TTTGTCTTAATTTAGACAAAAAAAAATATT
          1 TTTGTCTTAATTTAGACAAAAAAAAATATT

                                    *     
       1152 TTTGTCTTAATTTAGACAAAAAAACATA--
          1 TTTGTCTTAATTTAGACAAAAAAAAATATT

                    *     *    * * *      
       1180 TTTGTCTTCATTTAAACAAGATAGAATATT
          1 TTTGTCTTAATTTAGACAAAAAAAAATATT

               *  *     
       1210 TTTATCATAATT
          1 TTTGTCTTAATT

       1222 AAAGGCAAGA


Statistics
Matches: 132,  Mismatches: 20, Indels: 11
        0.81            0.12        0.07

Matches are distributed among these distances:
  28   42  0.32
  29   15  0.11
  30   75  0.57

ACGTcount: A:0.41, C:0.08, G:0.10, T:0.41


Consensus pattern (30 bp):   
TTTGTCTTAATTTAGACAAAAAAAAATATT

Found at i:1173 original size:58 final size:58

Alignment explanation


    Indices: 1035--1221  Score: 191
    Period size: 58  Copynumber: 3.2  Consensus size: 58

       1025 CTTTAACATG

                                            *               *  *   *   *
       1035 TTTGTCTTAATTTAGACAAAAAAACT-TGTTTGGTCTTAATTTAG--ATAAGAAAGTATG
          1 TTTGTCTTAATTTAGACAAAAAAA-TAT-TTTTGTCTTAATTTAGACAAAAAAAAATATT

                                                                        
       1092 TTTGTCTTAATTTAGACAAAAAAAAATATTTTTGTCTTAATTTAGACAAAAAAAAATATT
          1 TTTGTCTTAATTTAGAC--AAAAAAATATTTTTGTCTTAATTTAGACAAAAAAAAATATT

                                    *  *        *     *    * * *      
       1152 TTTGTCTTAATTTAGACAAAAAAACATATTTGTCTTCATTTAAACAAGATAGAATATT
          1 TTTGTCTTAATTTAGACAAAAAAATATTTTTGTCTTAATTTAGACAAAAAAAAATATT

               *  *     
       1210 TTTATCATAATT
          1 TTTGTCTTAATT

       1222 AAAGGCAAGA


Statistics
Matches: 111,  Mismatches: 14, Indels: 9
        0.83            0.10        0.07

Matches are distributed among these distances:
  57   17  0.15
  58   60  0.54
  59    8  0.07
  60   26  0.23

ACGTcount: A:0.41, C:0.08, G:0.10, T:0.41


Consensus pattern (58 bp):   
TTTGTCTTAATTTAGACAAAAAAATATTTTTGTCTTAATTTAGACAAAAAAAAATATT

Done.