Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018402774.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_5833.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 928

Length: 1548
ACGTcount: A:0.21, C:0.06, G:0.07, T:0.20

Warning! 707 characters in sequence are not A, C, G, or T


Found at i:362 original size:170 final size:170

Alignment explanation


    Indices: 1--544  Score: 513
    Period size: 170  Copynumber: 3.2  Consensus size: 170

                    *        *  *                      * *  *                
          1 ATTTAAAGTGAGTAAT-TAGGTTTTCGAAGGCATAGGTGACTACAGATAGACCTTTT-TTACCAA
          1 ATTTAAAGCGAGTAATAAAGCTTTT-GAAGGCATAGGTGACTATAAATGGA-CTTTTCTTACCAA

                 *            *           *                 * *            * 
         64 TGGATGTCTTTTTCTACATGTTTCTCATGGTAGACATTCAATTATAATATGTTTTAATAAAAATT
         64 TGGATATCTTTTTCTACACGTTTCTCA-GGCAGACATTCAATTATAATCTATTTTAATAAAAAAT

                           **********                * 
        129 ATAAAAAAATTTAAANNNNNNNNNNTTATGAGGTTATAAAATT
        128 ATAAAAAAATTTAAATCAAAATCAATTATGAGGTTATAAAAAT

                     *  *                 *  *                           *   
        172 ATTTAAAGCAAGAAATAAAGCTTTTGAAGGTATTGGTGACTATAAATGGACTTTTCTTACCCATG
          1 ATTTAAAGCGAGTAATAAAGCTTTTGAAGGCATAGGTGACTATAAATGGACTTTTCTTACCAATG

                         *             *    *                            *   
        237 GATATCTTTTTCTTCACGTTTCTCGAGACAGAGATTCAATTATAATCTATTTTAAT-AAAAGTAT
         66 GATATCTTTTTCTACACGTTTCTC-AGGCAGACATTCAATTATAATCTATTTTAATAAAAAATAT

                          **    *         *          
        301 AAAAAAATTTAAATTTAAATTAATTATGAGTTTATAAAAAT
        130 AAAAAAATTTAAATCAAAATCAATTATGAGGTTATAAAAAT

                    *               *        *   *                           
        342 ATTTAAAGTGAGTAATAAAGCTTTCGAAGGCATGGGTTACTATAAATGGACTTTTCTTACCAATG
          1 ATTTAAAGCGAGTAATAAAGCTTTTGAAGGCATAGGTGACTATAAATGGACTTTTCTTACCAATG

                 **********                                                  
        407 GATA-NNNNNNNNNNACGTTTCTCAAGGCAGACATTCAATTATAATCTATTTTAATAAAAAATAT
         66 GATATCTTTTTCTACACGTTTCTC-AGGCAGACATTCAATTATAATCTATTTTAATAAAAAATAT

            *        *                      *        
        471 CAAAAAATTCAAATCAAAATCAATTATGAGGTCAT-AAAAT
        130 AAAAAAATTTAAATCAAAATCAATTATGAGGTTATAAAAAT

                                         *    
        511 CATTTAAAGCGAGTAATAAAGCTTTTGAACGCAT
          1 -ATTTAAAGCGAGTAATAAAGCTTTTGAAGGCAT

        545 NNNNNNNNNN


Statistics
Matches: 304,  Mismatches: 64, Indels: 11
        0.80            0.17        0.03

Matches are distributed among these distances:
 169   43  0.14
 170  167  0.55
 171   87  0.29
 172    7  0.02

ACGTcount: A:0.38, C:0.10, G:0.13, T:0.35


Consensus pattern (170 bp):   
ATTTAAAGCGAGTAATAAAGCTTTTGAAGGCATAGGTGACTATAAATGGACTTTTCTTACCAATG
GATATCTTTTTCTACACGTTTCTCAGGCAGACATTCAATTATAATCTATTTTAATAAAAAATATA
AAAAAATTTAAATCAAAATCAATTATGAGGTTATAAAAAT
Done.