Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_018402798.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_5855.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 3739
ACGTcount: A:0.30, C:0.09, G:0.11, T:0.29
Warning! 815 characters in sequence are not A, C, G, or T
Found at i:852 original size:171 final size:161
Alignment explanation
Indices: 662--987 Score: 327
Period size: 171 Copynumber: 2.0 Consensus size: 161
652 GTAATGAGGA
* * **** * *
662 TTTTGAAAGAATGGGTGACTGTAAATAGACTTTTCTTGTGAATGAATACCTTTTTCTTCATAATT
1 TTTTGAAAGAATAGGTGACTATAAATAGACTTTTCTAACCAATGAATACATTTTTCTCCA-AATT
* * * *
727 T-TTGAT-GTAGACATTCAATTATTGTCCGTTTTAA-TGAAAATGT-AAAAAAATTGAACTTTAA
65 TCTTG-TGGTAGACATTCAATTATAGTCCATTTTAACT-AAAATATAAAAAAAATTCAAC-TTAA
*
788 AATCAATTATGAGATTATAAAACCATTTAAAGCNNNNNNNNNNGC
127 AATCAATTATAAGATTATAAAACCATTTAAAGC----------GC
* * * * *
833 TTTTGAAGGAATAGGTGACTATAAATGGACTTTTCTAACCAATGAATGCATTTTTGTCCACATTT
1 TTTTGAAAGAATAGGTGACTATAAATAGACTTTTCTAACCAATGAATACATTTTTCTCCAAATTT
*
898 CTTGTGGTAGACATTCAATTATAGTCTATTTTAACTAAAATATAAAAAAAATTCAACTTAAAATC
66 CTTGTGGTAGACATTCAATTATAGTCCATTTTAACTAAAATATAAAAAAAATTCAACTTAAAATC
963 AATTATAAGATTATAAAACCATTTA
131 AATTATAAGATTATAAAACCATTTA
988 NNNNNNNNNN
Statistics
Matches: 132, Mismatches: 19, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
170 5 0.04
171 114 0.86
172 13 0.10
ACGTcount: A:0.37, C:0.11, G:0.12, T:0.37
Consensus pattern (161 bp):
TTTTGAAAGAATAGGTGACTATAAATAGACTTTTCTAACCAATGAATACATTTTTCTCCAAATTT
CTTGTGGTAGACATTCAATTATAGTCCATTTTAACTAAAATATAAAAAAAATTCAACTTAAAATC
AATTATAAGATTATAAAACCATTTAAAGCGC
Found at i:1793 original size:171 final size:170
Alignment explanation
Indices: 1484--2286 Score: 853
Period size: 171 Copynumber: 4.7 Consensus size: 170
1474 NNNNNNNNNN
* * * *
1484 TCTGTTTTAACTAAAAATGTAAAAAAATTTAACTTAAAATCAATTTTGAGATTACAAAATCGTTT
1 TCTGTTTTAAC-AAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAATCATTT
* * * * * * * *
1549 AAAGCTAGTAATAAGACTTTTGATGGAATGGGAGACTATAAATGTACTTTCCTTGCAAATGAATG
65 AAAGCGAGTAATAAGGCTTTTGAAGGAATGGGTGACTATAAATGGACTTTTCTTGCCAATAAATG
* * *
1614 CTTTTTTCTTCACGTTTCTTGAGGTAGACATTCTATTATAG
130 CCTTTTTCTTCACGTTTCTCGAGGTAGACATTCAATTATAG
* * * *
1655 TCTGTTTTAATCAAAAATTTAAAATAATTCAACTTTAAATCAATTATGAAATTATAAAATCATTT
1 TCTGTTTTAA-CAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAATCATTT
* * * * *
1720 AGAGCAAGTAATAAGGCTTTTGAAGGAGTGGGTGACTATATATGGACTTTTCTTGCCAATAAATC
65 AAAGCGAGTAATAAGGCTTTTGAAGGAATGGGTGACTATAAATGGACTTTTCTTGCCAATAAATG
* * * **
1785 CCTTTTTCTTCACGTTTCTCGATGTAGATATTTAATTATTT
130 CCTTTTTCTTCACGTTTCTCGAGGTAGACATTCAATTATAG
* * *
1826 TCTGTTTTAATAAAAAATTTAAAAATAA-TCAACATAAAATCAATTATGAGATTATAAAATCATT
1 TCTGTTTTAA-CAAAAATGTAAAAA-AATTCAACTTAAAATCAATTATGAGATTATAAAATCATT
* * * ** ** * * *
1890 TAAAGTGAG-AA-AGAGAGCTTTTGAAAGAATAGAAGACTATAAATTAACTTTCCTTGCTAATGA
64 TAAAGCGAGTAATA-AG-GCTTTTGAAGGAATGGGTGACTATAAATGGACTTTTCTTGCCAATAA
*
1953 ATGCCTTTTTCTTCATGTTTCTTCG-GGTAGACATTCAATTA-ATG
127 ATGCCTTTTTCTTCACGTTTC-TCGAGGTAGACATTCAATTATA-G
* ** * *
1997 TCTTTTTTAACCAAAAATGTAAAAAAATTTTACTTAAAATCATTTATGAGATTATAAAACCATTT
1 TCTGTTTTAA-CAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAATCATTT
* * * * * *
2062 AACGTGAGTAATAAGGCTTTTGATA-GAATGGGTGACCATACATAGACTTTTCTTGCCTATAAAT
65 AAAGCGAGTAATAAGGCTTTTGA-AGGAATGGGTGACTATAAATGGACTTTTCTTGCCAATAAAT
* * ** *
2126 GCATTTTTCTCCTTGTTTCTCGAGGTAGACATTCAATTATTG
129 GCCTTTTTCTTCACGTTTCTCGAGGTAGACATTCAATTATAG
* * * * *
2168 TTTGTTTTAACTAAAAATGTAAAAAAATTCAACTTGAAAGCAAATATGAGATTATAAAACCATTT
1 TCTGTTTTAAC-AAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAATCATTT
* ** *
2233 AAAGCGAGTAATAATGCTTTTGAAGGAATATGTGACTATAAATGCACTTTTCTT
65 AAAGCGAGTAATAAGGCTTTTGAAGGAATGGGTGACTATAAATGGACTTTTCTT
2287 CTCAGTGAAT
Statistics
Matches: 522, Mismatches: 96, Indels: 28
0.81 0.15 0.04
Matches are distributed among these distances:
169 1 0.00
170 11 0.02
171 498 0.95
172 11 0.02
173 1 0.00
ACGTcount: A:0.37, C:0.12, G:0.13, T:0.38
Consensus pattern (170 bp):
TCTGTTTTAACAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAATCATTTA
AAGCGAGTAATAAGGCTTTTGAAGGAATGGGTGACTATAAATGGACTTTTCTTGCCAATAAATGC
CTTTTTCTTCACGTTTCTCGAGGTAGACATTCAATTATAG
Found at i:2112 original size:342 final size:341
Alignment explanation
Indices: 1484--2336 Score: 960
Period size: 342 Copynumber: 2.5 Consensus size: 341
1474 NNNNNNNNNN
* * * *
1484 TCTGTTTTAACTAAAAATGTAAAAAAATTTAACTTAAAATCAATTTTGAGATTACAAAATCGTTT
1 TCTGTTTTAACTAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAATCATTT
* *
1549 AAAGCT-AGTAATAAGA-CTTTTGATGGAATGGGAGACTATAAATGTACTTTCCTTGCAAATGAA
66 AAAG-TGAG-AA-AAGAGCTTTTGAAGGAAT-AGAGACTATAAATGTACTTTCCTTGCAAATGAA
* * * *
1612 TGCTTTTTTCTTCACGTTTCTTGAGGTAGACATTCTATTATAGTCTGTTTTAATCAAAAATTTAA
127 TGCCTTTTTCTTCACGTTTCTTGAGGTAGACATTCAATTATAGTCTGTTTTAACCAAAAATGTAA
* * *
1677 AATAATTCAACTTTAAATCAATTATGAAATTATAAAATCATTTAGAGCAAGTAATAAGGCTTTTG
192 AAAAATTCAACTTAAAATCAATTATGAAATTATAAAACCATTTAGAGCAAGTAATAAGGCTTTTG
* * * * * *
1742 AAGGAGTGGGTGACTATATATGGACTTTTCTTGCCAATAAATCCCTTTTTCTTCACGTTTCTCGA
257 AAGGAATGGGTGACCATACATAGACTTTTCTTGCCAATAAATCCATTTTTCTCCACGTTTCTCGA
* * *
1807 TGTAGATATTTAATTATT-T
322 GGTAGACATTCAATTATTGT
* *
1826 TCTGTTTTAA-TAAAAAATTTAAAAATAA-TCAACATAAAATCAATTATGAGATTATAAAATCAT
1 TCTGTTTTAACT-AAAAATGTAAAAA-AATTCAACTTAAAATCAATTATGAGATTATAAAATCAT
* *
1889 TTAAAGTGAGAAAGAGAGCTTTTGAAAGAATAGAAGACTATAAAT-TAACTTTCCTTGCTAATGA
64 TTAAAGTGAGAAA-AGAGCTTTTGAAGGAATAG-AGACTATAAATGT-ACTTTCCTTGCAAATGA
* *
1953 ATGCCTTTTTCTTCATGTTTCTTCG-GGTAGACATTCAATTA-ATGTCTTTTTTAACCAAAAATG
126 ATGCCTTTTTCTTCACGTTTCTT-GAGGTAGACATTCAATTATA-GTCTGTTTTAACCAAAAATG
** * * **
2016 TAAAAAAATTTTACTTAAAATCATTTATGAGATTATAAAACCATTTA-ACGTGAGTAATAAGGCT
189 TAAAAAAATTCAACTTAAAATCAATTATGAAATTATAAAACCATTTAGA-GCAAGTAATAAGGCT
* * **
2080 TTTGATA-GAATGGGTGACCATACATAGACTTTTCTTGCCTATAAATGCATTTTTCTCCTTGTTT
253 TTTGA-AGGAATGGGTGACCATACATAGACTTTTCTTGCCAATAAATCCATTTTTCTCCACGTTT
2144 CTCGAGGTAGACATTCAATTATTGT
317 CTCGAGGTAGACATTCAATTATTGT
* * * *
2169 T-TGTTTTAACTAAAAATGTAAAAAAATTCAACTTGAAAGCAAATATGAGATTATAAAACCATTT
1 TCTGTTTTAACTAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAATCATTT
* * * * * * *
2233 AAAGCGAGTAATAA-TGCTTTTGAAGGAATATGTGACTATAAATGCACTTTTCTT-CTCAGTGAA
66 AAAGTGAG-AA-AAGAGCTTTTGAAGGAATA-GAGACTATAAATGTACTTTCCTTGC-AAATGAA
* * * * *
2296 TGGCTTTTT-TTATACGTTTCCTGAGGTAGGCTTTCAATTAT
127 TGCCTTTTTCTT-CACGTTTCTTGAGGTAGACATTCAATTAT
2337 TATTNNNNNN
Statistics
Matches: 431, Mismatches: 58, Indels: 43
0.81 0.11 0.08
Matches are distributed among these distances:
340 1 0.00
341 17 0.04
342 401 0.93
343 11 0.03
344 1 0.00
ACGTcount: A:0.36, C:0.12, G:0.14, T:0.38
Consensus pattern (341 bp):
TCTGTTTTAACTAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAATCATTT
AAAGTGAGAAAAGAGCTTTTGAAGGAATAGAGACTATAAATGTACTTTCCTTGCAAATGAATGCC
TTTTTCTTCACGTTTCTTGAGGTAGACATTCAATTATAGTCTGTTTTAACCAAAAATGTAAAAAA
ATTCAACTTAAAATCAATTATGAAATTATAAAACCATTTAGAGCAAGTAATAAGGCTTTTGAAGG
AATGGGTGACCATACATAGACTTTTCTTGCCAATAAATCCATTTTTCTCCACGTTTCTCGAGGTA
GACATTCAATTATTGT
Found at i:2915 original size:171 final size:172
Alignment explanation
Indices: 2617--3738 Score: 1313
Period size: 171 Copynumber: 6.6 Consensus size: 172
2607 NNNAAAATGT
* * *
2617 AAAACAATTCAACTTAAAATCAATTATGAGATTATAAAACTA-TTAAAGCGAGCAATAAGGCTTT
1 AAAATAATTCAACTTAAAATCAATTATGAGATTATAAAACTATTTAAAGCTAGTAATAAGGCTTT
* * * * * * *
2681 TAAAGGAATAGAAGACTGTAAATGGACTTTTCTTCCCAATGAATGCC-TTTTTCATT-GTGTTTC
66 TGAAGGAATGGGAGACTATAAATGGACTTTCCTTGCCAATGAAT-CCTTTTTTC-TTCATGTTTC
* * * **
2744 -TAATTGTAGACAATCAATTATTGTC-AGTTTTAATGAAAAATATA
129 TTAA-GGTAGACATTCAATTATAGTCTA-TTTTAACCAAAAATATA
* * * *
2788 AAAATAA-TCAACTTAAAATTAATTATGGGATTATAAAACTATATAAAGCTAGTGATAAGGCTTT
1 AAAATAATTCAACTTAAAATCAATTATGAGATTATAAAACTATTTAAAGCTAGTAATAAGGCTTT
* * *
2852 TGAAGGAATGGGTGACTATAAATGGACTTTGCTTGCCAATGAATCCATTTTTC-TCAATGTTTCT
66 TGAAGGAATGGGAGACTATAAATGGACTTTCCTTGCCAATGAATCCTTTTTTCTTC-ATGTTTCT
* ** ** ** *
2916 TGAGGTTCACATTCAATTATTCTCCGTTTTAACCAAAGATATA
130 TAAGGTAGACATTCAATTATAGTCTATTTTAACCAAAAATATA
2959 AAAA-AATTCAACTTAAAATCAATTATGAGATTATAAAACTATTTAAAG-TGAGTAATAAGGCTT
1 AAAATAATTCAACTTAAAATCAATTATGAGATTATAAAACTATTTAAAGCT-AGTAATAAGGCTT
* * ** * * *
3022 TTGAAGGAATAGAAGACTATAAATACATTTTTCTTGCCAATGAATGCTTTTTTCTTCATGTTTCT
65 TTGAAGGAATGGGAGACTATAAATGGACTTTCCTTGCCAATGAATCCTTTTTTCTTCATGTTTCT
* *
3087 TAAGGTAGCCATTCAATTATAGTCTATTTTAACCAAAAATGTA
130 TAAGGTAGACATTCAATTATAGTCTATTTTAACCAAAAATATA
* **
3130 AAAA-AATTCAACTTAAAATCAATTTTGAGATTATAAAACCGTTTAAAG-TCAGTAATAAGGCTT
1 AAAATAATTCAACTTAAAATCAATTATGAGATTATAAAACTATTTAAAGCT-AGTAATAAGGCTT
* * * * *
3193 TTGAAGGAATGAGAGACTATAAATGGACTTTCCTTACCAATGAATACTTTTTTCATCATATTTCT
65 TTGAAGGAATGGGAGACTATAAATGGACTTTCCTTGCCAATGAATCCTTTTTTCTTCATGTTTCT
* * * *
3258 TGAGGTAGATATTCAATTATAGTCTGTTTTAACCAAAAATGTA
130 TAAGGTAGACATTCAATTATAGTCTATTTTAACCAAAAATATA
* *
3301 AAAA-AAATCAACTTAAAATCAATTATGAGATTATAAAACTATTTAAAGCGAGTAATAAGGCTTT
1 AAAATAATTCAACTTAAAATCAATTATGAGATTATAAAACTATTTAAAGCTAGTAATAAGGCTTT
* *
3365 TGAAGGAATGGGTGACTATAAATGGACTTTCCTTGCCAATGAATCCCTTTTTCTTCATGTTTCTT
66 TGAAGGAATGGGAGACTATAAATGGACTTTCCTTGCCAATGAATCCTTTTTTCTTCATGTTTCTT
* * * ** *
3430 GAGGTAAACATTCAATTATTGTCTATTTTAATGAAAAATGTA
131 AAGGTAGACATTCAATTATAGTCTATTTTAACCAAAAATATA
* * * * * * *
3472 TAAATAA-CCAACTTAAAATTAATTATGAGATTATAAAACCATTTAAAGCGAATAATAAAGCTTT
1 AAAATAATTCAACTTAAAATCAATTATGAGATTATAAAACTATTTAAAGCTAGTAATAAGGCTTT
* * * * * *
3536 TGAAGGAATAGGAGACTATAAATGGACTTTCTTTACTAATGAATACTTTTTTCTTCATGTTTCTC
66 TGAAGGAATGGGAGACTATAAATGGACTTTCCTTGCCAATGAATCCTTTTTTCTTCATGTTTCTT
* *
3601 AAGGAAGACATTCAATTATAGTCTATTTTAA-CAAACAAAATA
131 AAGGTAGACATTCAATTATAGTCTATTTTAACCAAA-AATATA
* * * *
3643 TAAAATAATTTAACTTAAAATCAATTTTGAGTTTATAAAAC-AGTTTAAA-ATGAGTAATAAGGC
1 -AAAATAATTCAACTTAAAATCAATTATGAGATTATAAAACTA-TTTAAAGCT-AGTAATAAGGC
3706 TTTTGAAGGAATGGGAGACTATAAATGGACTTT
63 TTTTGAAGGAATGGGAGACTATAAATGGACTTT
3739 T
Statistics
Matches: 818, Mismatches: 117, Indels: 30
0.85 0.12 0.03
Matches are distributed among these distances:
169 1 0.00
170 40 0.05
171 690 0.84
172 13 0.02
173 74 0.09
ACGTcount: A:0.39, C:0.12, G:0.14, T:0.35
Consensus pattern (172 bp):
AAAATAATTCAACTTAAAATCAATTATGAGATTATAAAACTATTTAAAGCTAGTAATAAGGCTTT
TGAAGGAATGGGAGACTATAAATGGACTTTCCTTGCCAATGAATCCTTTTTTCTTCATGTTTCTT
AAGGTAGACATTCAATTATAGTCTATTTTAACCAAAAATATA
Found at i:3259 original size:342 final size:339
Alignment explanation
Indices: 2610--3739 Score: 1455
Period size: 342 Copynumber: 3.3 Consensus size: 339
2600 NNNNNNNNNN
* * *
2610 AAAATGTAAAACAATTCAACTTAAAATCAATTATGAGATTATAAAACTA-TTAAAGCGAGCAATA
1 AAAATATAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACTATTTAAAGCGAGTAATA
* * * *
2674 AGGCTTTTAAAGGAATAGAAGACTGTAAATGGACTTTTCTTCCCAATGAATGCCTTTTTCATT-G
66 AGGCTTTTGAAGGAATAGAAGACTATAAATGGACTTTTCTTGCCAATGAATGCCTTTTTC-TTCA
* * *
2738 TGTTTC-TAATTGTAGACAATCAATTATTGTC-AGTTTTAATGAAAAATATAAAAATAATCAACT
130 TGTTTCTTAA-GGTAGACATTCAATTATTGTCTA-TTTTAATGAAAAATGTAAAAA-AATCAACT
* * * * * * *
2801 TAAAATTAATTATGGGATTATAAAACTATATAAAGCTAGTGATAAGGCTTTTGAAGGAATGGGTG
192 TAAAATTAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATGAGAG
* * * * **
2866 ACTATAAATGGACTTTGCTTGCCAATGAATCCATTTTTCTCAATGTTTCTTGAGGTTCACATTCA
257 ACTATAAATGGACTTTCCTTACCAATGAATACTTTTTTCTC-ATGTTTCTTGAGGTAGACATTCA
** *
2931 ATTATTCTCCGTTTTAACC
321 ATTATAGTCTGTTTTAACC
*
2950 AAAGATATAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACTATTTAAAGTGAGTAAT
1 AAA-ATATAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACTATTTAAAGCGAGTAAT
** * *
3015 AAGGCTTTTGAAGGAATAGAAGACTATAAATACATTTTTCTTGCCAATGAATGCTTTTTTCTTCA
65 AAGGCTTTTGAAGGAATAGAAGACTATAAATGGACTTTTCTTGCCAATGAATGCCTTTTTCTTCA
* * **
3080 TGTTTCTTAAGGTAGCCATTCAATTATAGTCTATTTTAACCAAAAATGTAAAAAAATTCAACTTA
130 TGTTTCTTAAGGTAGACATTCAATTATTGTCTATTTTAATGAAAAATGTAAAAAAA-TCAACTTA
* * *
3145 AAATCAATTTTGAGATTATAAAACCGTTTAAAGTC-AGTAATAAGGCTTTTGAAGGAATGAGAGA
194 AAATTAATTATGAGATTATAAAACCATTTAAAG-CGAGTAATAAGGCTTTTGAAGGAATGAGAGA
* *
3209 CTATAAATGGACTTTCCTTACCAATGAATACTTTTTTCATCATATTTCTTGAGGTAGATATTCAA
258 CTATAAATGGACTTTCCTTACCAATGAATACTTTTTTC-TCATGTTTCTTGAGGTAGACATTCAA
3274 TTATAGTCTGTTTTAACC
322 TTATAGTCTGTTTTAACC
* *
3292 AAAAATGTAAAAAAAATCAACTTAAAATCAATTATGAGATTATAAAACTATTTAAAGCGAGTAAT
1 -AAAATATAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACTATTTAAAGCGAGTAAT
* ** * *
3357 AAGGCTTTTGAAGGAATGGGTGACTATAAATGGACTTTCCTTGCCAATGAATCCCTTTTTCTTCA
65 AAGGCTTTTGAAGGAATAGAAGACTATAAATGGACTTTTCTTGCCAATGAATGCCTTTTTCTTCA
* * * *
3422 TGTTTCTTGAGGTAAACATTCAATTATTGTCTATTTTAATGAAAAATGTATAAATAACCAACTTA
130 TGTTTCTTAAGGTAGACATTCAATTATTGTCTATTTTAATGAAAAATGTA-AAAAAATCAACTTA
* *
3487 AAATTAATTATGAGATTATAAAACCATTTAAAGCGAATAATAAAGCTTTTGAAGGAAT-AGGAGA
194 AAATTAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATGA-GAGA
* * ** *
3551 CTATAAATGGACTTTCTTTACTAATGAATACTTTTTTCTTCATGTTTCTCAAGGAAGACATTCAA
258 CTATAAATGGACTTTCCTTACCAATGAATACTTTTTTC-TCATGTTTCTTGAGGTAGACATTCAA
*
3616 TTATAGTCTATTTTAACAAAC
322 TTATAGTCTGTTTTAAC---C
* * * * **
3637 AAAATATAAAATAATTTAACTTAAAATCAATTTTGAGTTTATAAAAC-AGTTTAAAATGAGTAAT
1 AAAATATAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACTA-TTTAAAGCGAGTAAT
* *
3701 AAGGCTTTTGAAGGAATGGGAGACTATAAATGGACTTTT
65 AAGGCTTTTGAAGGAATAGAAGACTATAAATGGACTTTT
Statistics
Matches: 691, Mismatches: 83, Indels: 28
0.86 0.10 0.03
Matches are distributed among these distances:
340 3 0.00
341 50 0.07
342 530 0.77
343 16 0.02
344 91 0.13
345 1 0.00
ACGTcount: A:0.39, C:0.12, G:0.14, T:0.35
Consensus pattern (339 bp):
AAAATATAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACTATTTAAAGCGAGTAATA
AGGCTTTTGAAGGAATAGAAGACTATAAATGGACTTTTCTTGCCAATGAATGCCTTTTTCTTCAT
GTTTCTTAAGGTAGACATTCAATTATTGTCTATTTTAATGAAAAATGTAAAAAAATCAACTTAAA
ATTAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATGAGAGACTA
TAAATGGACTTTCCTTACCAATGAATACTTTTTTCTCATGTTTCTTGAGGTAGACATTCAATTAT
AGTCTGTTTTAACC
Done.