Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018402807.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_5863.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 609

Length: 1015
ACGTcount: A:0.25, C:0.17, G:0.18, T:0.40


Found at i:435 original size:12 final size:12

Alignment explanation


    Indices: 414--444  Score: 53
    Period size: 12  Copynumber: 2.6  Consensus size: 12

        404 TTGAGGCTGT

                        
        414 TTTGTCTGCCGC
          1 TTTGTCTGCCGC

                 *      
        426 TTTGTTTGCCGC
          1 TTTGTCTGCCGC

                   
        438 TTTGTCT
          1 TTTGTCT

        445 ACTTTTTGCT


Statistics
Matches: 17,  Mismatches: 2, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  12   17  1.00

ACGTcount: A:0.00, C:0.26, G:0.23, T:0.52


Consensus pattern (12 bp):   
TTTGTCTGCCGC

Found at i:450 original size:61 final size:61

Alignment explanation


    Indices: 372--491  Score: 197
    Period size: 61  Copynumber: 2.0  Consensus size: 61

        362 TCATTTTGGA

                        *                                                 
        372 GCCGCTTTGTCTGCTTTTTGCTTTTATTCCTTTTGAGGCTG-TTTTGTCTGCCGCTTTGTTT
          1 GCCGCTTTGTCTACTTTTTGCTTTTATTCCTTTTGA-GCTGTTTTTGTCTGCCGCTTTGTTT

                                     *  *                              
        433 GCCGCTTTGTCTACTTTTTGCTTTTGTTTCTTTTGAGCTGTTTTTGTCTGCCGCTTTGT
          1 GCCGCTTTGTCTACTTTTTGCTTTTATTCCTTTTGAGCTGTTTTTGTCTGCCGCTTTGT

        492 CTGGCTTTTT


Statistics
Matches: 55,  Mismatches: 3, Indels: 2
        0.92            0.05        0.03

Matches are distributed among these distances:
  60    4  0.07
  61   51  0.93

ACGTcount: A:0.03, C:0.21, G:0.21, T:0.55


Consensus pattern (61 bp):   
GCCGCTTTGTCTACTTTTTGCTTTTATTCCTTTTGAGCTGTTTTTGTCTGCCGCTTTGTTT
Done.