Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018402810.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_5866.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 683

Length: 1139
ACGTcount: A:0.29, C:0.21, G:0.12, T:0.37


Found at i:555 original size:18 final size:19

Alignment explanation


    Indices: 516--564  Score: 64
    Period size: 18  Copynumber: 2.6  Consensus size: 19

        506 TTAATATTTT

                *               
        516 AATAATATTTTATTCATAAA
          1 AATATTATTTTATT-ATAAA

                               
        536 AATATTATTTTATT-TAAA
          1 AATATTATTTTATTATAAA

                  *    
        554 AATATTCTTTT
          1 AATATTATTTT

        565 TACCTATCAC


Statistics
Matches: 27,  Mismatches: 2, Indels: 2
        0.87            0.06        0.06

Matches are distributed among these distances:
  18   14  0.52
  20   13  0.48

ACGTcount: A:0.43, C:0.04, G:0.00, T:0.53


Consensus pattern (19 bp):   
AATATTATTTTATTATAAA
Done.