Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018402815.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_5870.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 936

Length: 1560
ACGTcount: A:0.37, C:0.12, G:0.16, T:0.34


Found at i:116 original size:49 final size:51

Alignment explanation


    Indices: 5--141  Score: 215
    Period size: 49  Copynumber: 2.7  Consensus size: 51

          1 TTCA

                           *               * *          *      
          5 TGATCAAGATTAAGTTGTGAAGACCCTTGAAGCAAAGATATCAAGTGTTCG
          1 TGATCAAGATTAAGTCGTGAAGACCCTTGAAACGAAGATATCAAATGTTCG

                                                               
         56 TGATCAAGATTAAGTCGTGAAGACCCTTGAAACGAA-A-ATCAAATGTTCG
          1 TGATCAAGATTAAGTCGTGAAGACCCTTGAAACGAAGATATCAAATGTTCG

                                        *        
        105 TGATCAAGATTAAGTCGTGAAGACCCTTAAAACGAAG
          1 TGATCAAGATTAAGTCGTGAAGACCCTTGAAACGAAG

        142 GTCAAGTAAG


Statistics
Matches: 80,  Mismatches: 5, Indels: 3
        0.91            0.06        0.03

Matches are distributed among these distances:
  49   46  0.57
  50    1  0.01
  51   33  0.41

ACGTcount: A:0.38, C:0.15, G:0.22, T:0.25


Consensus pattern (51 bp):   
TGATCAAGATTAAGTCGTGAAGACCCTTGAAACGAAGATATCAAATGTTCG
Done.