Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018402820.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_5875.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 801

Length: 1336
ACGTcount: A:0.29, C:0.18, G:0.21, T:0.32


Found at i:970 original size:19 final size:20

Alignment explanation


    Indices: 941--986  Score: 67
    Period size: 19  Copynumber: 2.4  Consensus size: 20

        931 TTTGGGATCC

                                
        941 AAATGTTTGATCTATCTCCT
          1 AAATGTTTGATCTATCTCCT

                       *        
        961 AAAT-TTTGATTTATCTCCT
          1 AAATGTTTGATCTATCTCCT

             *     
        980 ATATGTT
          1 AAATGTT

        987 GACATTGGTA


Statistics
Matches: 23,  Mismatches: 2, Indels: 2
        0.85            0.07        0.07

Matches are distributed among these distances:
  19   17  0.74
  20    6  0.26

ACGTcount: A:0.26, C:0.15, G:0.09, T:0.50


Consensus pattern (20 bp):   
AAATGTTTGATCTATCTCCT

Done.