Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018402831.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_5885.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 952

Length: 1587
ACGTcount: A:0.43, C:0.09, G:0.09, T:0.39


Found at i:1469 original size:17 final size:17

Alignment explanation


    Indices: 1447--1508  Score: 54
    Period size: 17  Copynumber: 3.4  Consensus size: 17

       1437 TATTTTAAGA

                             
       1447 TAAAAATAGAATAAAAT
          1 TAAAAATAGAATAAAAT

                           *  
       1464 TAAAAATTAG-ATAACAT
          1 TAAAAA-TAGAATAAAAT

                     *           
       1481 TGAACATAAAATGAATAAAAT
          1 T-AA-A-AATA-GAATAAAAT

                   
       1502 TAAAAAT
          1 TAAAAAT

       1509 TACTCATATT


Statistics
Matches: 35,  Mismatches: 4, Indels: 11
        0.70            0.08        0.22

Matches are distributed among these distances:
  17   13  0.37
  18    7  0.20
  19    3  0.09
  20    5  0.14
  21    7  0.20

ACGTcount: A:0.65, C:0.03, G:0.06, T:0.26


Consensus pattern (17 bp):   
TAAAAATAGAATAAAAT
Done.