Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018402833.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_5887.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 707

Length: 1179
ACGTcount: A:0.24, C:0.08, G:0.09, T:0.22

Warning! 431 characters in sequence are not A, C, G, or T


Found at i:1152 original size:18 final size:21

Alignment explanation


    Indices: 1114--1152  Score: 57
    Period size: 18  Copynumber: 2.0  Consensus size: 21

       1104 AGTGACTATA

                                 
       1114 AATGGACTTTTCTTCTGAATG
          1 AATGGACTTTTCTTCTGAATG

                                 
       1135 AATGG-CTTTT-TT-TGAATG
          1 AATGGACTTTTCTTCTGAATG

       1153 TTTACCAAGG


Statistics
Matches: 18,  Mismatches: 0, Indels: 3
        0.86            0.00        0.14

Matches are distributed among these distances:
  18    6  0.33
  19    2  0.11
  20    5  0.28
  21    5  0.28

ACGTcount: A:0.23, C:0.10, G:0.21, T:0.46


Consensus pattern (21 bp):   
AATGGACTTTTCTTCTGAATG
Done.