Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018402835.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_5889.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2865
ACGTcount: A:0.13, C:0.35, G:0.40, T:0.12


Found at i:2760 original size:19 final size:20

Alignment explanation


    Indices: 2736--2776  Score: 57
    Period size: 19  Copynumber: 2.1  Consensus size: 20

       2726 CGCCGCACCT

                                
       2736 GCGGCGCCGGG-CGCGGTCG
          1 GCGGCGCCGGGCCGCGGTCG

                  *       *     
       2755 GCGGCGTCGGGCCGGGGTCG
          1 GCGGCGCCGGGCCGCGGTCG

              
       2775 GC
          1 GC

       2777 CGGGCGGGCG


Statistics
Matches: 19,  Mismatches: 2, Indels: 1
        0.86            0.09        0.05

Matches are distributed among these distances:
  19   10  0.53
  20    9  0.47

ACGTcount: A:0.00, C:0.34, G:0.59, T:0.07


Consensus pattern (20 bp):   
GCGGCGCCGGGCCGCGGTCG
Done.