Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018402836.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_5890.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2348
ACGTcount: A:0.38, C:0.16, G:0.17, T:0.30


Found at i:2209 original size:12 final size:12

Alignment explanation


    Indices: 2192--2222  Score: 62
    Period size: 12  Copynumber: 2.6  Consensus size: 12

       2182 CAAGGGAAAA

                        
       2192 CAACAACAACAG
          1 CAACAACAACAG

                        
       2204 CAACAACAACAG
          1 CAACAACAACAG

                   
       2216 CAACAAC
          1 CAACAAC

       2223 TAAACAAAAC


Statistics
Matches: 19,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   19  1.00

ACGTcount: A:0.58, C:0.35, G:0.06, T:0.00


Consensus pattern (12 bp):   
CAACAACAACAG
Done.