Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018402842.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_5896.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 751

Length: 1252
ACGTcount: A:0.34, C:0.13, G:0.12, T:0.36

Warning! 60 characters in sequence are not A, C, G, or T


Found at i:1022 original size:170 final size:162

Alignment explanation


    Indices: 696--1067  Score: 343
    Period size: 170  Copynumber: 2.2  Consensus size: 162

        686 NNNNNATAGT

                    *                          *                  ***        
        696 TTTTTTAAAATTTTTGATTAAAAAGGATTATAATTGAATGTCTACCTCAAGAAATGTGAAGAAAA
          1 TTTTTT-ACATTTTTGATTAAAAAGGATTATAATTAAATGTCTACCTCAAGAAACAAGAAGAAAA

                         *               **       *  *  * *                  
        761 AGGCATTCATTGATAAGAAAAATCCATTGGTAGTCACCTATTCCTTTAAAAGCCTTATTACTCAC
         65 AGGCATTCATTGAAAAGAAAAATCCATTGACAGTCACCCATGCCCTCAAAAGCCTTATTACTCAC

                      **                            *
        826 TTNNNNNNNNNNTATAATCCCAAAATTGATTTTAAGTTGAC
        130 TT--------TATATAATCCCAAAATTGATTTTAAGTTGAA

                            *     **                                         
        867 TTTTTTACATTTTTGAATAAAATTGATTATAATTAAATGTCTACCTCAAGAAACAAGAAGAAAAA
          1 TTTTTTACATTTTTGATTAAAAAGGATTATAATTAAATGTCTACCTCAAGAAACAAGAAGAAAAA

                  *             *                                            
        932 GGCATTTATTGAAAAGAAAAGTCCACTT-ACAGTCACCCATGCCCTCAAAAGCCTTATTACTCAC
         66 GGCATTCATTGAAAAGAAAAATCCA-TTGACAGTCACCCATGCCCTCAAAAGCCTTATTACTCAC

                        **     *                     
        996 TTTANNNNNNNNNNTAATCTCAAAATTGATTTTAAGTTGAA
        130 TTTA--------TATAATCCCAAAATTGATTTTAAGTTGAA

                                            
       1037 TTTGTTTACATTTTTGATTAAAACA-GATTAT
          1 TTT-TTTACATTTTTGATTAAAA-AGGATTAT

       1068 TGTTGAATGT


Statistics
Matches: 165,  Mismatches: 25, Indels: 22
        0.78            0.12        0.10

Matches are distributed among these distances:
 170  133  0.81
 171   32  0.19

ACGTcount: A:0.36, C:0.13, G:0.11, T:0.34


Consensus pattern (162 bp):   
TTTTTTACATTTTTGATTAAAAAGGATTATAATTAAATGTCTACCTCAAGAAACAAGAAGAAAAA
GGCATTCATTGAAAAGAAAAATCCATTGACAGTCACCCATGCCCTCAAAAGCCTTATTACTCACT
TTATATAATCCCAAAATTGATTTTAAGTTGAA
Done.