genome.fa.s56.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397309.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_101.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  93324

Tables:   1   

This is table  1  of  1  ( 56 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
147--475	173	2.0	162	84	0	352	37	12	13	33	1.83
657--761	49	2.1	49	82	5	122	49	11	4	34	1.60
706--1825	341	3.3	339	78	6	915	38	11	13	35	1.80
706--2013	170	7.7	171	76	4	872	37	11	13	35	1.81
4374--4685	172	1.9	160	80	1	282	35	14	8	38	1.76
5421--7002	171	9.2	170	78	6	1392	35	13	11	38	1.82
5199--6921	343	5.0	337	77	6	1395	35	13	11	38	1.81
7880--9602	170	10.1	170	76	6	1228	35	13	11	38	1.81
8148--9606	343	4.3	335	77	7	1253	35	13	11	38	1.82
9713--12125	171	14.1	170	75	6	1771	37	11	14	35	1.82
9711--12125	514	4.7	507	79	5	2037	37	11	14	35	1.82
23866--23906	21	2.0	20	85	4	55	36	12	12	39	1.80
27849--28167	171	1.9	171	85	2	444	34	11	15	38	1.84
33202--35500	171	13.4	170	75	6	1650	35	14	11	37	1.82
33202--35414	343	6.5	340	77	6	1756	35	13	11	37	1.82
34404--35400	344	2.9	344	78	6	787	36	14	11	36	1.82
38277--40017	342	5.1	340	78	8	1572	35	14	11	38	1.82
38277--40017	682	2.5	675	78	6	1796	35	14	11	38	1.82
38277--40017	852	2.0	852	80	6	1943	35	14	11	38	1.82
40333--40782	169	2.6	170	81	6	491	37	12	12	38	1.80
40885--41605	173	4.2	173	74	10	446	38	10	14	36	1.81
40885--41995	170	6.5	168	72	9	591	37	11	13	35	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40885--42116	171	7.3	170	72	9	710	37	11	13	35	1.81
41118--42050	505	1.9	480	78	12	1001	36	12	12	35	1.81
42655--43850	171	7.0	170	80	5	1230	39	11	13	35	1.81
42655--43838	341	3.5	339	84	5	1388	39	11	13	35	1.81
47791--49195	171	8.2	170	79	8	1315	38	11	13	36	1.81
47790--49202	684	2.1	683	85	4	1949	38	11	13	36	1.81
52432--52864	169	2.5	167	79	7	462	36	12	10	39	1.79
53322--54118	171	4.7	172	71	6	550	34	14	12	34	1.84
55640--56086	171	2.6	171	79	7	462	38	12	11	35	1.80
57290--58660	171	8.0	169	77	7	1222	37	11	14	35	1.83
57404--58660	343	3.7	340	78	6	1378	38	11	14	35	1.83
57290--58660	683	2.0	684	89	2	2087	37	11	14	35	1.83
59650--59689	18	2.2	18	100	0	80	67	5	5	22	1.30
60126--60445	168	1.9	171	82	3	405	40	10	14	34	1.80
60126--60501	168	2.2	171	79	5	397	38	10	14	36	1.81
60919--61332	171	2.4	168	78	7	449	35	12	14	36	1.85
64075--64428	173	2.1	172	83	7	436	38	12	13	35	1.82
64997--65489	173	2.9	163	79	10	369	38	11	13	34	1.81
64554--65609	170	6.2	170	72	6	612	36	10	13	33	1.80
66735--67040	170	1.8	170	82	5	404	36	11	14	36	1.83
66744--67373	341	1.9	315	76	7	396	35	12	11	34	1.80
69661--69987	170	1.9	171	83	3	426	36	12	15	35	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72038--72837	171	4.7	169	72	8	505	36	12	14	33	1.83
75029--75748	172	4.2	172	79	2	572	34	12	13	34	1.81
76461--77926	515	2.8	511	78	6	1262	38	11	13	36	1.81
76461--77927	171	8.6	171	76	5	1150	38	11	13	36	1.81
78622--78660	21	1.9	20	84	5	51	41	12	17	28	1.87
80273--80944	171	3.9	170	74	5	433	33	14	12	36	1.83
80229--81183	342	2.8	341	75	7	824	34	14	12	35	1.84
81777--82476	170	4.1	169	76	8	449	32	14	11	36	1.82
84745--86313	170	9.2	169	78	5	1315	39	10	14	35	1.81
84745--86313	510	3.1	501	77	7	1511	39	10	14	35	1.81
88117--88156	21	1.9	21	84	0	53	52	10	15	22	1.71
88648--89631	170	5.8	171	81	4	1022	35	15	12	37	1.85

Tables:   1

The End!