Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018402854.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_5906.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5726
ACGTcount: A:0.29, C:0.18, G:0.20, T:0.33


Found at i:3367 original size:19 final size:19

Alignment explanation


    Indices: 3343--3381  Score: 78
    Period size: 19  Copynumber: 2.1  Consensus size: 19

       3333 GGCTCTGTGG

                               
       3343 ACAGGATAAGTTAACAGAA
          1 ACAGGATAAGTTAACAGAA

                               
       3362 ACAGGATAAGTTAACAGAA
          1 ACAGGATAAGTTAACAGAA

             
       3381 A
          1 A

       3382 GAAATTGGAA


Statistics
Matches: 20,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  19   20  1.00

ACGTcount: A:0.54, C:0.10, G:0.21, T:0.15


Consensus pattern (19 bp):   
ACAGGATAAGTTAACAGAA
Done.