Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018402857.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_5909.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 972

Length: 1620
ACGTcount: A:0.39, C:0.15, G:0.18, T:0.28


Found at i:897 original size:20 final size:19

Alignment explanation


    Indices: 872--919  Score: 53
    Period size: 20  Copynumber: 2.4  Consensus size: 19

        862 ACTTGAAATG

                               * 
        872 AAAGAAAA-CAAAGAAGAGGA
          1 AAAGAAAAGC-AA-AAGAGAA

                                
        892 AAAGAAGAAGCAAAAGAGAA
          1 AAAGAA-AAGCAAAAGAGAA

                    
        912 AAAGAAAA
          1 AAAGAAAA

        920 ATTTGGCACC


Statistics
Matches: 25,  Mismatches: 1, Indels: 5
        0.81            0.03        0.16

Matches are distributed among these distances:
  19    2  0.08
  20   18  0.72
  21    4  0.16
  22    1  0.04

ACGTcount: A:0.73, C:0.04, G:0.23, T:0.00


Consensus pattern (19 bp):   
AAAGAAAAGCAAAAGAGAA
Done.