Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018402867.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_5918.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 655

Length: 1092
ACGTcount: A:0.23, C:0.07, G:0.08, T:0.21

Warning! 448 characters in sequence are not A, C, G, or T


Found at i:1060 original size:170 final size:171

Alignment explanation


    Indices: 747--1070  Score: 404
    Period size: 171  Copynumber: 1.9  Consensus size: 171

        737 NNNNGGAATG

                                  *                  *   *         *         
        747 AGTGACTATAAATGGACTTTTCTTGTCAATGAATGCTTTTTTCTTTATATTTCTCGAGATAGACA
          1 AGTGACTATAAATGGACTTTTCGTGTCAATGAATGCTTTTTACTTCATATTTCTCAAGATAGACA

                        **        *     *           **                *  *   
        812 TTCAATTATAGTGTGTTTTAACTAAAAATGTAAAAAAATTTTACTTAAAATCAATTATTAGTTTA
         66 TTCAATTATAGTCCGTTTTAACCAAAAAGGTAAAAAAATTCAACTTAAAATCAATTATGAGATTA

                  *                                  
        877 TAAAACTATTTAAAGTAAGTAATAGGACTTTCGAAGGCTTA
        131 TAAAACCATTTAAAGTAAGTAATAGGACTTTCGAAGGCTTA

                                        *  **                *          * *  
        918 AGTGACTATAAATGGACTTTTCGTGTCACTGGTTGGC-TTTTACTTCATGTTT-TCCAAGGTGGA
          1 AGTGACTATAAATGGACTTTTCGTGTCAATGAAT-GCTTTTTACTTCATATTTCT-CAAGATAGA

                                                            *                
        981 CATTCAATTATAG-CCGTTTTAACCAAAAAGGTAAAAAAATTCAACTTTAAATCAAATT-TGAGA
         64 CATTCAATTATAGTCCGTTTTAACCAAAAAGGTAAAAAAATTCAACTTAAAATC-AATTATGAGA

                               *       
       1044 TTATAAAACCATTTAAAGTGAGTAATA
        128 TTATAAAACCATTTAAAGTAAGTAATA

       1071 AAGTTTTTGA


Statistics
Matches: 129,  Mismatches: 21, Indels: 7
        0.82            0.13        0.04

Matches are distributed among these distances:
 170   62  0.48
 171   65  0.50
 172    2  0.02

ACGTcount: A:0.36, C:0.12, G:0.14, T:0.38


Consensus pattern (171 bp):   
AGTGACTATAAATGGACTTTTCGTGTCAATGAATGCTTTTTACTTCATATTTCTCAAGATAGACA
TTCAATTATAGTCCGTTTTAACCAAAAAGGTAAAAAAATTCAACTTAAAATCAATTATGAGATTA
TAAAACCATTTAAAGTAAGTAATAGGACTTTCGAAGGCTTA
Done.