Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018402869.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_592.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 840

Length: 1401
ACGTcount: A:0.24, C:0.10, G:0.09, T:0.23

Warning! 470 characters in sequence are not A, C, G, or T


Found at i:599 original size:171 final size:161

Alignment explanation


    Indices: 303--635  Score: 404
    Period size: 171  Copynumber: 2.0  Consensus size: 161

        293 ACTTAAAATC

                                           * *     *   *       *             
        303 AATTATGAGGTTATACAACCATTTAAAGCGAGTGATAAGTCTTTCGAAGGCGTAGGTGACTATAA
          1 AATTATGAGGTTATACAACCATTTAAAGCGACTAATAAGGCTTGCGAAGGCATAGGTGACTATAA

                                                *                            
        368 ATGGACTTTTGCATCCAATGAGAGACTTTTTCTTCATGTTTCTCAAGGTAGAAGTTTAATTATAA
         66 ATGGACTTTTGCATCCAATGAGAGACTTTTTCTTCACGTTTCTCAAGGTAGAAGTTTAATTATAA

                                           
        433 TCTGTTTTAACCAAAAATATAAAAAAATTCA
        131 TCTGTTTTAACCAAAAATATAAAAAAATTCA

                                                                            *
        464 ANNNNNNNNNNATTATGAGGTTATA-AATCCATTTAAAGCGACTAATAAGGCTTGCGAAGGCATG
          1 A----------ATTATGAGGTTATACAA-CCATTTAAAGCGACTAATAAGGCTTGCGAAGGCATA

                                   *           *  *                   *      
        528 GGTGACTATAAATGGACTTTT-CCTGCCAATGA-ATAGTTTTTTCTTCACGTTTCTCACGGTAGA
         55 GGTGACTATAAATGGACTTTTGCAT-CCAATGAGAGA-CTTTTTCTTCACGTTTCTCAAGGTAGA

                                            *            
        591 CA-TTTAATTATAATCTGTTTTAACCAAAAATGTAAAAAAATTCA
        118 -AGTTTAATTATAATCTGTTTTAACCAAAAATATAAAAAAATTCA

             
        635 A
          1 A

        636 CTTNNNNNNN


Statistics
Matches: 146,  Mismatches: 12, Indels: 18
        0.83            0.07        0.10

Matches are distributed among these distances:
 161    1  0.01
 170    6  0.04
 171  138  0.95
 172    1  0.01

ACGTcount: A:0.35, C:0.14, G:0.16, T:0.33


Consensus pattern (161 bp):   
AATTATGAGGTTATACAACCATTTAAAGCGACTAATAAGGCTTGCGAAGGCATAGGTGACTATAA
ATGGACTTTTGCATCCAATGAGAGACTTTTTCTTCACGTTTCTCAAGGTAGAAGTTTAATTATAA
TCTGTTTTAACCAAAAATATAAAAAAATTCA
Done.