Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_018402876.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_5926.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2338
ACGTcount: A:0.38, C:0.13, G:0.14, T:0.35
Found at i:435 original size:171 final size:167
Alignment explanation
Indices: 4--1055 Score: 852
Period size: 171 Copynumber: 6.2 Consensus size: 167
1 ACC
* * * * * * ** *
4 TAAAATCAATTATGAGATTACAAAACCATTTAAAGTGAGTAATTAGGCTTTCGAATGTTTTCG-T
1 TAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGT-ATTAAGATTTTGAAAG-CATGGAT
* * * * * *
68 GACTAGAAATGGACTTTTCTTGCCAATGAAAGGCTTT-TTCTTCACGTTTCTTC-AGGCAAATAT
64 AACTATAAATGGACTTTTCTTGCCAATGAATGGCTTTCTT-TTCA--TTT-TCCAAGGCAGACAT
* *
131 TCAATTATAATCTGTTTTAACCAAAAATGT-AAAAATTCAACA
125 TCAATTATAATCTGTTTTAACAAAAAATATAAAAAATTCAACA
* * * ** * * *
173 TAAAATTAATTATGAGATTATAGAACCATTTAAAATGC-A-TAATAAGGCTTTCAAAGTTATGGG
1 TAAAATCAATTATGAGATTATAAAACCATTT-AAA-GCGAGTATTAAGATTTTGAAAG-CATGGA
* * * * *
236 TGACTATAAATGGACTTTTCTTGCCAATGAATGGTCGTTTCTTTGCATTTTCGAAGGTAGACTTT
63 TAACTATAAATGGACTTTTCTTGCCAATGAATGG-C-TTTCTTTTCATTTTCCAAGGCAGACATT
* * *
301 CAATTATAATCTGTTTTAATAAAAAATGTAAAAACATTTAACA
126 CAATTATAATCTGTTTTAACAAAAAATATAAAAA-ATTCAACA
* * *
344 TAAAATCAATAACGAGATTATAAAACCATTTAAAGCGAGTATTTACGATTTTGAAAGCATGGATA
1 TAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTA-TTAAGATTTTGAAAGCATGGATA
* * ** * * *
409 ACTAGAAATGGACTTTTCTTGCCAATGAATGGCTTTCTCTTCATGTTTCTTTAGGCACATATTTA
65 ACTATAAATGGACTTTTCTTGCCAATGAATGGCTTTCTTTTCAT-TTTC-CAAGGCAGACATTCA
** * *
474 ATTATAATCTGTTTTAGTAAAAAATATTAAAAATTCAACT
128 ATTATAATCTGTTTTAACAAAAAATATAAAAAATTCAACA
* * * ** * *
514 TAAAATTAATTATGAGATTATAAAACCATTTAAAGCGCGTAATAAGGCTTTCAAAG-ATATGAGT
1 TAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTATTAAGATTTTGAAAGCAT-GGA-T
* * ** * * * * *
578 GACTATAAATGGACTTGT-TTGCCAATGAATACCTTTTTTTTCACGTTTTTCGAGGTAAACAATT
64 AACTATAAATGGACTTTTCTTGCCAATGAATGGCTTTCTTTTCA--TTTTCCAAGGCAGAC-ATT
* * * *
642 -AATTATAATATGTTTTCACAAAAAACATAAAAAAATTCAACC
126 CAATTATAATCTGTTTTAACAAAAAATAT-AAAAAATTCAACA
* * * *
684 TAAAATCAATTATGAGATTATAAAACTATTTAAAGCGAGTAATTATGATTTTGAAGGCATGGGTA
1 TAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGT-ATTAAGATTTTGAAAGCATGGATA
* ** * * *
749 ATTATAAATGGACTTTTCTTGCTGATGAATGACTTT-TTCTTCATATTTTCCAAAGCAGACGTTC
65 ACTATAAATGGACTTTTCTTGCCAATGAATGGCTTTCTT-TTC--ATTTTCCAAGGCAGACATTC
* *
813 AATTATAATCTGTTTTAACCAAAAATGTAAAAAAATTCAATC-
127 AATTATAATCTGTTTTAACAAAAAATAT-AAAAAATTCAA-CA
* ** * * * * *
855 TAAATTCAATTATGAGATTATAAAACCATTTAAAATGAGTAATTAGGCTTTTGAAGGTACGGATA
1 TAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGT-ATTAAGATTTTGAAAGCATGGATA
* * * * *
920 ACTATAAATAGACTTTTGTTGCCAATGAATGGCTTT-TTCTTCATGTCTCCCAAGACAGACATTG
65 ACTATAAATGGACTTTTCTTGCCAATGAATGGCTTTCTT-TTCAT-T-TTCCAAGGCAGACATTC
** * *
984 AATTATTGTCTGTTTTAATAAAAAATATAAAACAATTTAACA
127 AATTATAATCTGTTTTAACAAAAAATATAAAA-AATTCAACA
1026 TAAAATCAATTATG-GAATTATAAAACCATT
1 TAAAATCAATTATGAG-ATTATAAAACCATT
1056 AGAAAGTGAG
Statistics
Matches: 712, Mismatches: 138, Indels: 64
0.78 0.15 0.07
Matches are distributed among these distances:
168 16 0.02
169 172 0.24
170 158 0.22
171 350 0.49
172 15 0.02
173 1 0.00
ACGTcount: A:0.38, C:0.13, G:0.13, T:0.36
Consensus pattern (167 bp):
TAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTATTAAGATTTTGAAAGCATGGATAA
CTATAAATGGACTTTTCTTGCCAATGAATGGCTTTCTTTTCATTTTCCAAGGCAGACATTCAATT
ATAATCTGTTTTAACAAAAAATATAAAAAATTCAACA
Found at i:648 original size:340 final size:338
Alignment explanation
Indices: 4--1069 Score: 1135
Period size: 340 Copynumber: 3.1 Consensus size: 338
1 ACC
* * * * * * ** *
4 TAAAATCAATTATGAGATTACAAAACCATTTAAAGTGAGTAATTAGGCTTTCGAATGTTTTCG-T
1 TAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATTACGATTTTGAAAG-CATGGAT
* * * *
68 GACTAGAAATGGACTTTTCTTGCCAATGAAAGGCTTTTTCTTCACGTTTCTTCAGGCAAATATTC
65 AACTAGAAATGGACTTTTCTTGCCAATGAATGGCTTTTTCTTCATGTTTCTTAAGGCAAATATTC
* * *
133 AATTATAATCTGTTTTAACCAAAAATGTAAAAATTCAACATAAAATTAATTATGAGATTATAGAA
130 AATTATAATCTGTTTTAACCAAAAATTTAAAAATTCAACTTAAAATTAATTATGAGATTATAAAA
* *
198 CCATTTAAAATGCATAATAAGGCTTTCAAAGTTATGGGTGACTATAAATGGACTTTTCTTGCCAA
195 CCATTTAAAATGCGTAATAAGGCTTTCAAAGATAT-GGTGACTATAAATGGACTTTTCTTGCCAA
* * * * *
263 TGAATGGTCGTTTCTTTGCA--TTTTCGAAGGTAGACTTTCAATTATAATCTGTTTTAATAAAAA
259 TGAAT--ACCTTTTTTTTCAGTTTTTCG-AGGTAGACATTCAATTATAATCTGTTTTAATAAAAA
*
326 ATGTAAAAACATTTAACA
321 ATATAAAAACATTTAACA
* * *
344 TAAAATCAATAACGAGATTATAAAACCATTTAAAGCGAGTATTTACGATTTTGAAAGCATGGATA
1 TAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATTACGATTTTGAAAGCATGGATA
* * * *
409 ACTAGAAATGGACTTTTCTTGCCAATGAATGGCTTTCTCTTCATGTTTCTTTAGGCACATATTTA
66 ACTAGAAATGGACTTTTCTTGCCAATGAATGGCTTTTTCTTCATGTTTCTTAAGGCAAATATTCA
***
474 ATTATAATCTGTTTTAGTAAAAAATATTAAAAATTCAACTTAAAATTAATTATGAGATTATAAAA
131 ATTATAATCTGTTTTAACCAAAAAT-TTAAAAATTCAACTTAAAATTAATTATGAGATTATAAAA
** *
539 CCATTTAAAGCGCGTAATAAGGCTTTCAAAGATATGAGTGACTATAAATGGACTTGT-TTGCCAA
195 CCATTTAAAATGCGTAATAAGGCTTTCAAAGATATG-GTGACTATAAATGGACTTTTCTTGCCAA
* * * *
603 TGAATACCTTTTTTTTCACGTTTTTCGAGGTAAACAATT-AATTATAATATGTTTTCACAAAAAA
259 TGAATACCTTTTTTTTCA-GTTTTTCGAGGTAGAC-ATTCAATTATAATCTGTTTTAATAAAAAA
* * * *
667 CATAAAAAAATTCAACC
322 TATAAAAACATTTAACA
* * * *
684 TAAAATCAATTATGAGATTATAAAACTATTTAAAGCGAGTAATTATGATTTTGAAGGCATGGGTA
1 TAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATTACGATTTTGAAAGCATGGATA
* * ** * * * * * **
749 ATTATAAATGGACTTTTCTTGCTGATGAATGACTTTTTCTTCATATTT-TCCAAAGCAGACGTTC
66 ACTAGAAATGGACTTTTCTTGCCAATGAATGGCTTTTTCTTCATGTTTCT-TAAGGCAAATATTC
*
813 AATTATAATCTGTTTTAACCAAAAATGTAAAAAAATTCAA-TCT-AAATTCAATTATGAGATTAT
130 AATTATAATCTGTTTTAACCAAAAAT-T-TAAAAATTCAACT-TAAAATT-AATTATGAGATTAT
* * ** * * * * *
876 AAAACCATTTAAAATGAGTAATTAGGCTTTTGAAGGTACGGATAACTATAAATAGACTTTTGTTG
191 AAAACCATTTAAAATGCGTAATAAGGCTTTCAAAGATATGG-TGACTATAAATGGACTTTTCTTG
** * * ** * ** * **
941 CCAATGAATGGCTTTTTCTTCATGTCTCCCAAGACAGACATTGAATTATTGTCTGTTTTAATAAA
255 CCAATGAATACCTTTTTTTTCA-GTTTTTCGAGGTAGACATTCAATTATAATCTGTTTTAATAAA
1006 AAATAT-AAAACAATTTAACA
319 AAATATAAAAAC-ATTTAACA
* *
1026 TAAAATCAATTATG-GAATTATAAAACCATTAGAAAGTGAGTAAT
1 TAAAATCAATTATGAG-ATTATAAAACCATT-TAAAGCGAGTAAT
1070 AAGGCTCTCA
Statistics
Matches: 605, Mismatches: 104, Indels: 31
0.82 0.14 0.04
Matches are distributed among these distances:
338 9 0.01
339 3 0.00
340 321 0.53
341 175 0.29
342 86 0.14
343 11 0.02
ACGTcount: A:0.39, C:0.12, G:0.13, T:0.36
Consensus pattern (338 bp):
TAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATTACGATTTTGAAAGCATGGATA
ACTAGAAATGGACTTTTCTTGCCAATGAATGGCTTTTTCTTCATGTTTCTTAAGGCAAATATTCA
ATTATAATCTGTTTTAACCAAAAATTTAAAAATTCAACTTAAAATTAATTATGAGATTATAAAAC
CATTTAAAATGCGTAATAAGGCTTTCAAAGATATGGTGACTATAAATGGACTTTTCTTGCCAATG
AATACCTTTTTTTTCAGTTTTTCGAGGTAGACATTCAATTATAATCTGTTTTAATAAAAAATATA
AAAACATTTAACA
Found at i:1266 original size:396 final size:396
Alignment explanation
Indices: 720--1507 Score: 1109
Period size: 396 Copynumber: 2.0 Consensus size: 396
710 TATTTAAAGC
* * * ** *
720 GAGTAATTATGATTTTGAAGGCATGGGTAATTATAAATGGACTTTTCTTGCTGATGAATGACTTT
1 GAGTAATTATGATTTTGAAGGCATGGGTAACTATAAATAGACCTTTCTTGCCAATAAATGACTTT
* * *
785 TTCTTCATATTTTCCAAAGCAGACGTTCAATTATAATCTGTTTTAACCAAAAATGTAAAAAAATT
66 TTCTTCATATGTCCCAAAGCAGACATTCAATTATAATCTGTTTTAACCAAAAATGTAAAAAAATT
* * *
850 CAATCTAAATTCAATTATGAGATTATAAAACCATTTAAAATGAGTAATTAGGCTTTTGAAGGT-A
131 CAACCTAAATTCAATTATGAGATTATAAAACCATTTAAAACGAGTAATTAGGCTTTTCAA-GTCA
* ** *
914 CGGA-TAACTATAAATAGACTTTTGTTGCCAATGAATGGCTTTTTCTTCATGTCTCCCAAGACAG
195 -GGAGTAACTATAAATAGACTTTTCTTGCCAATGAATGAATTTTTCTTCATGTCTCACAAGACAG
* * * *
978 ACATTGAATTATTGTCTGTTTTAATAAAAAATATAAAACAATTTAACATAAAATCAATTATG-GA
259 ACATTCAATTATAGTCTGTTTTAATAAAAAATATAAAAAAATTCAACATAAAATCAATTATGAG-
* * * * *
1042 ATTATAAAACCATTAGAAAGTGAGTAATAAGGCTCTC-ATGGTTATGGGTAACTATAAATGGACT
323 ATTATAAAACCATT-GAAAGCGAGTAATAAGGCTCTCAAAGG-AATGGGCAACTATAAATAGACT
1106 TTTCTTGAAGT
386 TTTCTTGAAGT
1117 GAGTAATTATGATTTTGAAGGCATGGGTAACTATAAATAGACCTTT-TTGCCAATAAATGACTTT
1 GAGTAATTATGATTTTGAAGGCATGGGTAACTATAAATAGACCTTTCTTGCCAATAAATGACTTT
* * *
1181 TTCTTCATGTGTCCCAAAGTAGACATTCAATTATAATTTGTTTTAACCAAAAATGTAAAAAAATT
66 TTCTTCATATGTCCCAAAGCAGACATTCAATTATAATCTGTTTTAACCAAAAATGTAAAAAAATT
* * *
1246 CAACCTAAATTCTATTATGAGATTATAAAACCATTTAAAGCGAGTAATTAGGCTTTTCAAGTCAT
131 CAACCTAAATTCAATTATGAGATTATAAAACCATTTAAAACGAGTAATTAGGCTTTTCAAGTCAG
* * * * * *
1311 GAGTAACTATAAATGGACTTTTCTTTCCAATGAATGAATTTTTCTTCATGTTTCAGAAGGCAGGC
196 GAGTAACTATAAATAGACTTTTCTTGCCAATGAATGAATTTTTCTTCATGTCTCACAAGACAGAC
* *
1376 ATTCAGTTATAGTCTGTTTTAATAAAAAATGTAAAAAAATTCAACATAAAATCAATTATGAGATT
261 ATTCAATTATAGTCTGTTTTAATAAAAAATATAAAAAAATTCAACATAAAATCAATTATGAGATT
* * * *
1441 ATAAAACTATTTAAAGCGAGTAATAAGGCTTTCAAAGGAATGGGCGACTATAAATAGACTTTTCT
326 ATAAAACCATTGAAAGCGAGTAATAAGGCTCTCAAAGGAATGGGCAACTATAAATAGACTTTTCT
1506 TG
391 TG
1508 CCAATGACAG
Statistics
Matches: 344, Mismatches: 43, Indels: 10
0.87 0.11 0.03
Matches are distributed among these distances:
395 48 0.14
396 252 0.73
397 44 0.13
ACGTcount: A:0.38, C:0.12, G:0.15, T:0.35
Consensus pattern (396 bp):
GAGTAATTATGATTTTGAAGGCATGGGTAACTATAAATAGACCTTTCTTGCCAATAAATGACTTT
TTCTTCATATGTCCCAAAGCAGACATTCAATTATAATCTGTTTTAACCAAAAATGTAAAAAAATT
CAACCTAAATTCAATTATGAGATTATAAAACCATTTAAAACGAGTAATTAGGCTTTTCAAGTCAG
GAGTAACTATAAATAGACTTTTCTTGCCAATGAATGAATTTTTCTTCATGTCTCACAAGACAGAC
ATTCAATTATAGTCTGTTTTAATAAAAAATATAAAAAAATTCAACATAAAATCAATTATGAGATT
ATAAAACCATTGAAAGCGAGTAATAAGGCTCTCAAAGGAATGGGCAACTATAAATAGACTTTTCT
TGAAGT
Found at i:1406 original size:171 final size:171
Alignment explanation
Indices: 1117--2333 Score: 1125
Period size: 171 Copynumber: 7.1 Consensus size: 171
1107 TTCTTGAAGT
* * * * * * *
1117 GAGTAATTATGATTTTGAAGGCATGGGTAACTATAAATAGACCTTT-TTGCCAATAAATGACTTT
1 GAGTAATTAGGCTTTCGAAGGCATGAGTGACTATAAATAGACTTTTCTTGCCAATGAATGACTTT
* * * * * * *
1181 TTCTTCATGTGTCCCAAAGTAGACATTCAATTATAATTTGTTTTAACCAAAAATGTAAAAAAATT
66 TTCTTCACGTTTCTCAAGGCAGACATTCAATTATAATCTGTTTTAACAAAAAATGTAAAAAAATT
* *
1246 CAACCTAAATTCTATTATGAGATTATAAAACCATTTAAAGC
131 CAACCTAAAATCAATTATGAGATTATAAAACCATTTAAAGC
* * * * *
1287 GAGTAATTAGGCTTTTC-AAGTCATGAGTAACTATAAATGGACTTTTCTTTCCAATGAATGAATT
1 GAGTAATTAGGC-TTTCGAAGGCATGAGTGACTATAAATAGACTTTTCTTGCCAATGAATGACTT
* ** * * * *
1351 TTTCTTCATGTTTCAGAAGGCAGGCATTCAGTTATAGTCTGTTTTAATAAAAAATGTAAAAAAAT
65 TTTCTTCACGTTTCTCAAGGCAGACATTCAATTATAATCTGTTTTAACAAAAAATGTAAAAAAAT
* *
1416 TCAACATAAAATCAATTATGAGATTATAAAACTATTTAAAGC
130 TCAACCTAAAATCAATTATGAGATTATAAAACCATTTAAAGC
* * * * * *
1458 GAGTAATAAGGCTTTCAAAGGAATGGGCGACTATAAATAGACTTTTCTTGCCAATGACA-GTCTT
1 GAGTAATTAGGCTTTCGAAGGCATGAGTGACTATAAATAGACTTTTCTTGCCAATGA-ATGACTT
* * ** * * *
1522 TTTCATCACCTTTCTTGAGGCAGACATTCAATTATAATCTGTTTTCACAAAGAATATAAAAAAAT
65 TTTCTTCACGTTTCTCAAGGCAGACATTCAATTATAATCTGTTTTAACAAAAAATGTAAAAAAAT
* *
1587 TCAACCTAAATTCAATTGTGAGATTAT-AAACCATTTAAAGC
130 TCAACCTAAAATCAATTATGAGATTATAAAACCATTTAAAGC
* ** * * * * * * *
1628 AAGTGTTTAGGCTTTCGAATGC-TTAGGTCACTAGAAATGGACTTTTCTTAG-CAATAAATGGCT
1 GAGTAATTAGGCTTTCGAAGGCATGA-GTGACTATAAATAGACTTTTCTT-GCCAATGAATGACT
* *
1691 TTTTCTTCACGTTTCTTAAGGCAGATATTCAATTATAAT-TAGTTTTAACAAAAAATGTAAAAAA
64 TTTTCTTCACGTTTCTCAAGGCAGACATTCAATTATAATCT-GTTTTAACAAAAAATGTAAAAAA
* * * * *
1755 ATTCTACCCAAAATCAATTATGAGATTCTAAAACTATTTAAAGG
128 ATTCAACCTAAAATCAATTATGAGATTATAAAACCATTTAAAGC
* * *
1799 GAGTAATAAGGCTTTCGAAGGC-TTAGGTGACTATAAAT-GTACTTTGT-TTGCCAATGAATGCC
1 GAGTAATTAGGCTTTCGAAGGCATGA-GTGACTATAAATAG-ACTTT-TCTTGCCAATGAATGAC
* * * * * *
1861 TTTTTATTCACGTTTCTCAAGACAGTCATTCAATTATAATCTGTTTGAACTAAACATGTAAAAAA
63 TTTTTCTTCACGTTTCTCAAGGCAGACATTCAATTATAATCTGTTTTAACAAAAAATGTAAAAAA
** *
1926 ATTCAACCTAAAATCAATTATTTGATTATAAAA-CGTTTAAAGC
128 ATTCAACCTAAAATCAATTATGAGATTATAAAACCATTTAAAGC
* * * * * * *
1969 GAGTAATTAGGCTTTCGAATGCTTGGGTGATTAGAAATAGACTTTTCTTGCCAATGAAAGGCTTT
1 GAGTAATTAGGCTTTCGAAGGCATGAGTGACTATAAATAGACTTTTCTTGCCAATGAATGACTTT
* * * * *
2034 TTCTTCACGTTTCTTAAGGTAGATATTCAATTCTAATATGTTTTAACAAAAAATGT-AAAAAATT
66 TTCTTCACGTTTCTCAAGGCAGACATTCAATTATAATCTGTTTTAACAAAAAATGTAAAAAAATT
*** * * *
2098 CAATAGAAAATTAATTATGAGATTATAGAACCATTTAAAGA
131 CAACCTAAAATCAATTATGAGATTATAAAACCATTTAAAGC
* * * * * * * * *
2139 GCGTAATAAGGCTTTCAAAGGTAT-AGGTGA-TAACAAATGGACTTTTCTTACCAATGAATAACA
1 GAGTAATTAGGCTTTCGAAGGCATGA-GTGACT-ATAAATAGACTTTTCTTGCCAATGAATGACT
* * * * * * * * * *
2202 GTTTGTTCGCATTT-TCCAACGTAGATATTCAATTATGATATG-TTTAAGCAAAAAATATAAAAA
64 TTTTCTTCACGTTTCT-CAAGGCAGACATTCAATTATAATCTGTTTTAA-CAAAAAATGTAAAAA
* * * * * *
2265 AATTCAACATTAAATCAATTACGAGATTATAAAACAATTTAAGGT
127 AATTCAACCTAAAATCAATTATGAGATTATAAAACCATTTAAAGC
* * * *
2310 GACTAATTATGATTTTGAAGGCAT
1 GAGTAATTAGGCTTTCGAAGGCAT
2334 AGGTA
Statistics
Matches: 851, Mismatches: 174, Indels: 43
0.80 0.16 0.04
Matches are distributed among these distances:
169 42 0.05
170 373 0.44
171 433 0.51
172 3 0.00
ACGTcount: A:0.38, C:0.13, G:0.14, T:0.35
Consensus pattern (171 bp):
GAGTAATTAGGCTTTCGAAGGCATGAGTGACTATAAATAGACTTTTCTTGCCAATGAATGACTTT
TTCTTCACGTTTCTCAAGGCAGACATTCAATTATAATCTGTTTTAACAAAAAATGTAAAAAAATT
CAACCTAAAATCAATTATGAGATTATAAAACCATTTAAAGC
Found at i:1746 original size:341 final size:338
Alignment explanation
Indices: 1201--2306 Score: 1180
Period size: 341 Copynumber: 3.2 Consensus size: 338
1191 GTCCCAAAGT
* *
1201 AGACATTCAATTATAATTTGTTTTAACCAAAAATGTAAAAAAATTCAACCTAAATTCTATTATGA
1 AGACATTCAATTATAATCTGTTTTAA-CAAAAATGTAAAAAAATTCAACCTAAATTCAATTATGA
* *
1266 GATTATAAAACCATTTAAAGCGAGTAATTAGGCTTTTC-AA-G-TCATGAGTAACTATAAATGGA
65 GATTAT-AAACCATTTAAAGCGAGTAATTAGGC-TTTCGAATGCTTA-G-GTAACTAGAAATGGA
* * ** * ** ** * *
1328 CTTTTCTTTCCAATGAATGAATTTTTCTTCATGTTTCAGAAGGCAGGCATTCAGTTATAGTCT-G
126 CTTTTC-TTGCAATAAATGGCTTTTTCTTCACGTTTCTTAAGGCAGATATTCAATTATAAT-TAG
* *
1392 TTTTAATAAAAAATGTAAAAAAATTCAACATAAAATCAATTATGAGATTATAAAACTATTTAAAG
189 TTTTAACAAAAAATGTAAAAAAATTCAACACAAAATCAATTATGAGATTATAAAACTATTTAAAG
* * * *
1457 CGAGTAATAAGGCTTTCAAAGGAATGGGCGACTATAAATAGACTTTTCTTGCCAATGACA-GTCT
254 AGAGTAATAAGGCTTTCAAAGGAATAGGTGACTATAAAT-GACTTTTCTTGCCAATGA-ATGCCT
** *
1521 TTTTCA-TCACCTTTCTTGAGGC
317 TTTT-ATTCACCTTTCTCAAGAC
* * *
1543 AGACATTCAATTATAATCTGTTTTCACAAAGAATATAAAAAAATTCAACCTAAATTCAATTGTGA
1 AGACATTCAATTATAATCTGTTTTAACAAA-AATGTAAAAAAATTCAACCTAAATTCAATTATGA
* ** *
1608 GATTATAAACCATTTAAAGCAAGTGTTTAGGCTTTCGAATGCTTAGGTCACTAGAAATGGACTTT
65 GATTATAAACCATTTAAAGCGAGTAATTAGGCTTTCGAATGCTTAGGTAACTAGAAATGGACTTT
1673 TCTTAGCAATAAATGGCTTTTTCTTCACGTTTCTTAAGGCAGATATTCAATTATAATTAGTTTTA
130 TCTT-GCAATAAATGGCTTTTTCTTCACGTTTCTTAAGGCAGATATTCAATTATAATTAGTTTTA
* * * *
1738 ACAAAAAATGTAAAAAAATTCTACCCAAAATCAATTATGAGATTCTAAAACTATTTAAAGGGAGT
194 ACAAAAAATGTAAAAAAATTCAACACAAAATCAATTATGAGATTATAAAACTATTTAAAGAGAGT
* **
1803 AATAAGGCTTTCGAAGGCTTAGGTGACTATAAATGTACTTTGT-TTGCCAATGAATGCCTTTTTA
259 AATAAGGCTTTCAAAGGAATAGGTGACTATAAATG-ACTTT-TCTTGCCAATGAATGCCTTTTTA
*
1867 TTCACGTTTCTCAAGAC
322 TTCACCTTTCTCAAGAC
* * * * **
1884 AGTCATTCAATTATAATCTGTTTGAACTAAACATGTAAAAAAATTCAACCTAAAATCAATTATTT
1 AGACATTCAATTATAATCTGTTTTAAC-AAAAATGTAAAAAAATTCAACCTAAATTCAATTATGA
* * * * * *
1949 GATTATAAAACGTTTAAAGCGAGTAATTAGGCTTTCGAATGCTTGGGTGATTAGAAATAGACTTT
65 GATTATAAACCATTTAAAGCGAGTAATTAGGCTTTCGAATGCTTAGGTAACTAGAAATGGACTTT
* *
2014 TCTTGCCAATGAAA-GGCTTTTTCTTCACGTTTCTTAAGGTAGATATTCAATTCTAA-TATGTTT
130 TCTTG-CAAT-AAATGGCTTTTTCTTCACGTTTCTTAAGGCAGATATTCAATTATAATTA-GTTT
* * * * * *
2077 TAACAAAAAATGT-AAAAAATTCAATAGAAAATTAATTATGAGATTATAGAACCATTTAAAGAGC
192 TAACAAAAAATGTAAAAAAATTCAACACAAAATCAATTATGAGATTATAAAACTATTTAAAGAGA
* * * ** **
2141 GTAATAAGGCTTTCAAAGGTATAGGTGA-TAACAAATGGACTTTTCTTACCAATGAATAACAGTT
257 GTAATAAGGCTTTCAAAGGAATAGGTGACT-ATAAAT-GACTTTTCTTGCCAATGAATGCCTTTT
* * * *
2205 TGTTCGCATTT-TCCAACG-T
320 TATTCACCTTTCT-CAA-GAC
* * * * * *
2224 AGATATTCAATTATGATATG-TTTAAGCAAAAAATATAAAAAAATTCAACATTAAA-TCAATTAC
1 AGACATTCAATTATAATCTGTTTTAA-C-AAAAATGTAAAAAAATTCAAC-CTAAATTCAATTAT
*
2287 GAGATTATAAAACAATTTAA
63 GAGATTAT-AAACCATTTAA
2307 GGTGACTAAT
Statistics
Matches: 646, Mismatches: 96, Indels: 45
0.82 0.12 0.06
Matches are distributed among these distances:
339 7 0.01
340 163 0.25
341 404 0.63
342 70 0.11
343 2 0.00
ACGTcount: A:0.39, C:0.13, G:0.14, T:0.34
Consensus pattern (338 bp):
AGACATTCAATTATAATCTGTTTTAACAAAAATGTAAAAAAATTCAACCTAAATTCAATTATGAG
ATTATAAACCATTTAAAGCGAGTAATTAGGCTTTCGAATGCTTAGGTAACTAGAAATGGACTTTT
CTTGCAATAAATGGCTTTTTCTTCACGTTTCTTAAGGCAGATATTCAATTATAATTAGTTTTAAC
AAAAAATGTAAAAAAATTCAACACAAAATCAATTATGAGATTATAAAACTATTTAAAGAGAGTAA
TAAGGCTTTCAAAGGAATAGGTGACTATAAATGACTTTTCTTGCCAATGAATGCCTTTTTATTCA
CCTTTCTCAAGAC
Done.