Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018402881.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_5931.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1777
ACGTcount: A:0.36, C:0.11, G:0.13, T:0.34

Warning! 100 characters in sequence are not A, C, G, or T


Found at i:544 original size:171 final size:171

Alignment explanation


    Indices: 359--706  Score: 370
    Period size: 170  Copynumber: 2.0  Consensus size: 171

        349 ATTAATTATG

                                  *                               *          
        359 AGATTATAAAACTATTTAGAA-CGAGTAAAAA-AGCTATTAAAAG-AATGGGAGGCTATAAATAG
          1 AGATTATAAAACTATTTA-AAGAGAGTAAAAAGA-CT-TTAAAAGCAATGGGAGACTATAAATAG

                *  *   *           *          *              *  *    *       
        421 ACTTTTTTTTATCAATGAATGCCTTTTTCTTCACGTCTGTC-AG-GGCAGACGTTCACTTATAGT
         63 AC-TATTCTTACCAATGAATGCCATTTTCTTCACAT-T-TCTAGAGGCAAACATTCAATTATAG-

                       *                                     
        484 C-TATTTTAATGAAAAATGTAAAAA-ATTTCAACTTAAAATCAATTAGT
        124 CGTATTTTAATAAAAAATGTAAAAATA-TTCAACTTAAAATCAATTAGT

                                        *        **          *          *    
        531 AGATTAT-AAACTATTTAAAGAGAGTAATAAGACTTTTGAAGCAATGGGTGACTATAAATGGACT
          1 AGATTATAAAACTATTTAAAGAGAGTAAAAAGACTTTAAAAGCAATGGGAGACTATAAATAGACT

                  *         * *                      *                   *   
        595 ATTCTTGCCAATGAATTCGATTTTCTTCACATTTCTAGAGGTAAACATTCAATTATAGCGTGTTT
         66 ATTCTTACCAATGAATGCCATTTTCTTCACATTTCTAGAGGCAAACATTCAATTATAGCGTATTT

                                                   * 
        660 TAATAAAAAATGTAAAAATATTCAACTTAAAATCAATTATT
        131 TAATAAAAAATGTAAAAATATTCAACTTAAAATCAATTAGT

                  
        701 AGATTA
          1 AGATTA

        707 NNNNNNNNNN


Statistics
Matches: 147,  Mismatches: 22, Indels: 16
        0.79            0.12        0.09

Matches are distributed among these distances:
 168    2  0.01
 169    4  0.03
 170   94  0.64
 171   39  0.27
 172    8  0.05

ACGTcount: A:0.40, C:0.11, G:0.14, T:0.35


Consensus pattern (171 bp):   
AGATTATAAAACTATTTAAAGAGAGTAAAAAGACTTTAAAAGCAATGGGAGACTATAAATAGACT
ATTCTTACCAATGAATGCCATTTTCTTCACATTTCTAGAGGCAAACATTCAATTATAGCGTATTT
TAATAAAAAATGTAAAAATATTCAACTTAAAATCAATTAGT
Done.