Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018402888.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_5939.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 650

Length: 1084
ACGTcount: A:0.11, C:0.37, G:0.38, T:0.13


Found at i:696 original size:18 final size:18

Alignment explanation


    Indices: 640--696  Score: 51
    Period size: 18  Copynumber: 3.1  Consensus size: 18

        630 GTCGGCTCCG

                *             * 
        640 GGCGCCGACGCGCCGTTGCC
          1 GGCGGCGAC-CGCC-TTGGC

              *        *  *   
        660 GGTGGCGACCGACTCGGC
          1 GGCGGCGACCGCCTTGGC

                              
        678 GGCGGCGACCGCCTTGGC
          1 GGCGGCGACCGCCTTGGC

             
        696 G
          1 G

        697 ATCTCGGGGT


Statistics
Matches: 29,  Mismatches: 8, Indels: 2
        0.74            0.21        0.05

Matches are distributed among these distances:
  18   19  0.66
  19    3  0.10
  20    7  0.24

ACGTcount: A:0.07, C:0.39, G:0.44, T:0.11


Consensus pattern (18 bp):   
GGCGGCGACCGCCTTGGC
Done.