Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018402890.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_5940.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 780

Length: 1301
ACGTcount: A:0.39, C:0.11, G:0.13, T:0.36

Warning! 10 characters in sequence are not A, C, G, or T


Found at i:299 original size:171 final size:169

Alignment explanation


    Indices: 1--1301  Score: 1178
    Period size: 171  Copynumber: 7.6  Consensus size: 169

                                *                   *        *    ***        
          1 CAATTATGAGATTATAAAACTATTTAAAGTGAGTAATAAGACTTTTGAATGAATATTTGACTATA
          1 CAATTATGAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTTTTGAAGGAATGGGTGACTATA

               *           *          *                  *       *          *
         66 AATAGACTTTTCTTGCCAATGAATGCGTTTTTCTTCACGTTTCTCGAGGTAGATATTCAATTATT
         66 AATGGACTTTTCTTGTCAATGAATGCCTTTTTCTTCACGTTTCTCAAGGTAGACATTCAATTATA

            *   *                                    
        131 GTCTATTTTAATGAAAAATATAAAAACAATCAACTTAAAAT
        131 ATCTGTTTTAAT-AAAAATATAAAAA-AATCAACTTAAAAT

            *                    *        *         *                        
        172 TAATTATGAGATTATAAAACCTTTTAAAGTAAGTAATAAGCCTTTTGAAGGAATGGGTGACTATA
          1 CAATTATGAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTTTTGAAGGAATGGGTGACTATA

                      *     *                              **      *         
        237 AATGGACTTTCCTTGTAAATGAATGCCTTTTTCTTCACGTTTCTCAAAATAGACAGTCAATTATA
         66 AATGGACTTTTCTTGTCAATGAATGCCTTTTTCTTCACGTTTCTCAAGGTAGACATTCAATTATA

                     * *       *           *  *       
        302 ATCTGTTTTGACAAAACATGTAAAAAAATTTGAATTTAAAAT
        131 ATCTGTTTTAATAAAA-ATATAAAAAAA--TCAACTTAAAAT

            *    *      *      *                  *   *                      
        344 TAATTTTGAGATAATAAAATCATTTAAAGTGAGTAATAGGGCATTTGAAGGAATGGGTGACTATA
          1 CAATTATGAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTTTTGAAGGAATGGGTGACTATA

                        *                            *     **  *  * *        
        409 AA-GAGACTTTTTTTG-CTAATGAATGCCTTTTTCATT-ACATTTCTTGAGATACAAATTCAATT
         66 AATG-GACTTTTCTTGTC-AATGAATGCCTTTTTC-TTCACGTTTCTCAAGGTAGACATTCAATT

               * *                         *            
        471 ATAGTTTGTTTTAACTAAAAATATAAAACAATTCAACTTAAAAT
        128 ATAATCTGTTTTAA-TAAAAATATAAAA-AAATCAACTTAAAAT

                          *    **   *                     *        * *       
        515 CAATTATGAGATTAAAAAATTATTAAAAGTGAGTAATAAGGCTTTTAAAGGAATGAGAGACTATA
          1 CAATTATGAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTTTTGAAGGAATGGGTGACTATA

               **                    * *        * *     *       *            
        580 AATACACTTTTCTTG-CTAATGAATACTTTTTTCTTTATGTTTCGCAAGGTAAACATTCAATTAT
         66 AATGGACTTTTCTTGTC-AATGAATGCCTTTTTCTTCACGTTTCTCAAGGTAGACATTCAATTAT

            *     *              *       * *          
        644 TATCTGATTTAATGAAAAATGTTAAAAAATTTAACTTAAAAT
        130 AATCTGTTTTAAT-AAAAAT-ATAAAAAAATCAACTTAAAAT

                                         *     *   **        *               
        686 CAATTATGAGATTATAAAACCATTTAAAGCGAGTACTAAACCTTTTGAAAGAATGGGTGACTATA
          1 CAATTATGAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTTTTGAAGGAATGGGTGACTATA

                *         *   * *    *                         *       *     
        751 AATGAACTTTTCTTATCAGTAAATGTCTTTTTCTTCACGTTTCTCAAGGTAAACATTCATTTATA
         66 AATGGACTTTTCTTGTCAATGAATGCCTTTTTCTTCACGTTTCTCAAGGTAGACATTCAATTATA

              *        *                   *          
        816 ATTTGTTTTAACAAAAA-ATAAAAAGAAATTGAACTTAAAAT
        131 ATCTGTTTTAATAAAAATAT-AAAA-AAA-TCAACTTAAAAT

                 *                       **    *              *    **        
        857 CAATTTTGAGATTATAAAACCATTTAAAGAAAGTATTAAGGCTTTTGAAGAAATGACTGACTATA
          1 CAATTATGAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTTTTGAAGGAATGGGTGACTATA

                          *    *     *      * *        *          *  *       
        922 AATGGACTTTTCTTCTCAAGGAATGGCTTTTTGTACACGTTTCCCAAGGTAGACGTTTAATTATA
         66 AATGGACTTTTCTTGTCAATGAATGCCTTTTTCTTCACGTTTCTCAAGGTAGACATTCAATTATA

                        *                * *   *      
        987 ATCTGTTTCCT-CTAAAAATA-AAAAACATTTAACCTAAAAT
        131 ATCTGTTT--TAATAAAAATATAAAAA-AATCAACTTAAAAT

                                         *              *    *    * *        
       1027 CAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTGTGAACGAATAGATGACTATA
          1 CAATTATGAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTTTTGAAGGAATGGGTGACTATA

                *      *              *      *     *     *                   
       1092 AATGAACTTTTTTTAG-CAAATGAATACCTTTTACTTCATGTTTCCCAAGGTAGACATTCAATTA
         66 AATGGACTTTTCTT-GTC-AATGAATGCCTTTTTCTTCACGTTTCTCAAGGTAGACATTCAATTA

              * *     *          *        *            
       1156 TAGTATGTTTCAACTAAAAATGTAAAATAATTCAACTTAAAAT
        129 TAATCTGTTTTAA-TAAAAATATAAAA-AAATCAACTTAAAAT

            **********                                                *      
       1199 NNNNNNNNNNATTATAAAACCATTTAAAGTGAGTAATAAGGCTTTATGAAGGAATGGGAGACTAT
          1 CAATTATGAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTTT-TGAAGGAATGGGTGACTAT

                *        *             *          
       1264 AAATAGACTTTTCATGTCAATGAATGCTTTTTTCTTCA
         65 AAATGGACTTTTCTTGTCAATGAATGCCTTTTTCTTCA


Statistics
Matches: 907,  Mismatches: 195, Indels: 55
        0.78            0.17        0.05

Matches are distributed among these distances:
 168    1  0.00
 169    4  0.00
 170   95  0.10
 171  560  0.62
 172  209  0.23
 173   38  0.04

ACGTcount: A:0.39, C:0.11, G:0.13, T:0.36


Consensus pattern (169 bp):   
CAATTATGAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTTTTGAAGGAATGGGTGACTATA
AATGGACTTTTCTTGTCAATGAATGCCTTTTTCTTCACGTTTCTCAAGGTAGACATTCAATTATA
ATCTGTTTTAATAAAAATATAAAAAAATCAACTTAAAAT

Done.