Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018402898.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_5948.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 703

Length: 1172
ACGTcount: A:0.31, C:0.13, G:0.18, T:0.38

Warning! 10 characters in sequence are not A, C, G, or T


Found at i:874 original size:30 final size:30

Alignment explanation


    Indices: 809--883  Score: 80
    Period size: 31  Copynumber: 2.5  Consensus size: 30

        799 GGGTTAGGGT

                    *                 *   
        809 AGGGTTAGGTAGTAAAACTACTACATTTCA
          1 AGGGTTAGATAGTAAAACTACTACATGTCA

            *                        *     
        839 TGGGTTATGATAGTAAAACTACTACCTGT-A
          1 AGGGTTA-GATAGTAAAACTACTACATGTCA

                  *        
        869 AGGGTTCGAGTAGTA
          1 AGGGTTAGA-TAGTA

        884 GTCTTAGGGA


Statistics
Matches: 37,  Mismatches: 6, Indels: 4
        0.79            0.13        0.09

Matches are distributed among these distances:
  29    2  0.05
  30   17  0.46
  31   18  0.49

ACGTcount: A:0.33, C:0.12, G:0.24, T:0.31


Consensus pattern (30 bp):   
AGGGTTAGATAGTAAAACTACTACATGTCA
Done.