Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_018397818.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_112.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 16290
ACGTcount: A:0.22, C:0.07, G:0.07, T:0.22
Warning! 6806 characters in sequence are not A, C, G, or T
Found at i:2654 original size:171 final size:169
Alignment explanation
Indices: 2334--2763 Score: 467
Period size: 171 Copynumber: 2.5 Consensus size: 169
2324 NNNNNNATGA
* * *
2334 GAAGAAAAAAGCATTCATTGGTAAGAAAAGTCAATTTATAGTCTCTCATTTCTTCAAAAG-TCTT
1 GAAG-AAAAAGCATTCATTGGCAAGAAAAGTCCATTTATAGTCTCTCATTCCTTCAAAAGCT-TT
*
2398 ATTACTCGCTTTAAATGGCTTTATCAAGCAATAATTGATTTTAAGTTGAATTATTTTACATATTT
64 ATTACTCGCTTTAAATGGTTTTAT-AAGCAATAATTGATTTTAAGTTGAATTATTTTACATATTT
* *
2463 TATTAAAACAGACCATAATTGAATGTCTATCTT-GGGAAACAT
128 TATTAAAACAGACAATAATTGAATGTCTAT-TTCGAGAAACAT
* * * *
2505 GACGAAACAAGCATTCATTGGCAAGAAAAGTCCATTTACAGTCTCTTAGTCCTTCAAAAGCTTTA
1 GAAGAAA-AAGCATTCATTGGCAAGAAAAGTCCATTTATAGTCTCTCATTCCTTCAAAAGCTTTA
** * *********
2570 TTACTCATTTTAAATGGTTTTATAATCAAATAATTGATTTTAAGTT-ANNNNNNNNNNCAT-TTT
65 TTACTCGCTTTAAATGGTTTTATAAGC-AATAATTGATTTTAAGTTGA-ATTATTTTACATATTT
* * *
2633 TGTTTAAAATAGACAATAATTGAATGTCTATTTCGAGAAACGT
128 T-ATTAAAACAGACAATAATTGAATGTCTATTTCGAGAAACAT
* * * *
2676 GAAGAGAAAATCATTCATTGACAAGAAAAGTCCATTT-TAGT-TACCCATTCCTTCAAAAGCCTT
1 GAAGA-AAAAGCATTCATTGGCAAGAAAAGTCCATTTATAGTCT-CTCATTCCTTCAAAAGCTTT
2739 ATTACTCGCTTTAAATGGTTTTATA
64 ATTACTCGCTTTAAATGGTTTTATA
2764 NNNNNNNNNN
Statistics
Matches: 216, Mismatches: 35, Indels: 17
0.81 0.13 0.06
Matches are distributed among these distances:
169 1 0.00
170 55 0.25
171 157 0.73
172 3 0.01
ACGTcount: A:0.35, C:0.14, G:0.13, T:0.36
Consensus pattern (169 bp):
GAAGAAAAAGCATTCATTGGCAAGAAAAGTCCATTTATAGTCTCTCATTCCTTCAAAAGCTTTAT
TACTCGCTTTAAATGGTTTTATAAGCAATAATTGATTTTAAGTTGAATTATTTTACATATTTTAT
TAAAACAGACAATAATTGAATGTCTATTTCGAGAAACAT
Found at i:6983 original size:171 final size:170
Alignment explanation
Indices: 6522--6987 Score: 465
Period size: 171 Copynumber: 2.7 Consensus size: 170
6512 NNNNNNNNNN
* * * *
6522 AGTTGAATTTTTTTACATTTTTCATTAAAATAGACTATAATTGAATGTTT-TCCTCGAGAAACGA
1 AGTTGAATTATTTTACATTTTT-ATTAAAATAGACAATAATTGAATGTTTATCTTCGAGAAACGT
* * * *
6586 GAAGAAAAAAGCATTCATTGGTAAGAAAAGTCAATTTGTAGTCTCTCATTTCTTCAAAAGTCTTA
65 GAAG-AAAAAGCATTCATTGGCAAGAAAAGTCCATTTATAGTCTCTCATTCCTTCAAAAGTCTTA
* * **
6651 TTACTTGCTTTAAATGGCTTTATCAGCCCATAATTGATTTTA
129 TTACTTACTTTAAATGGCTTTATAAGCAAATAATTGATTTTA
* * * *
6693 AGTTGAATTATTTTACATATTATATTAAAACAGACAATAATTGAATGTCTATCTT-GAGAAACAT
1 AGTTGAATTATTTTACAT-TTTTATTAAAATAGACAATAATTGAATGTTTATCTTCGAGAAACGT
* * * *
6757 GACGAAGCAAGCATTCATTGGCAAGAAAAGTCCATTTACCA-TCTCTCAGTCCTTCAAAAG-CTT
65 GAAGAA-AAAGCATTCATTGGCAAGAAAAGTCCATTTA-TAGTCTCTCATTCCTTCAAAAGTC-T
* * *
6820 TATTACTTATTTTAAATGGTTTTATAATCAAATAATTGATTTTA
127 TATTACTTACTTTAAATGGCTTTATAAGCAAATAATTGATTTTA
********** * *
6864 AGNNNNNNNNNNTTACATTTTTGTTTAAAATAGACAATAATTGAATGTTTAT-TTCAAGAAACGT
1 AGTTGAATTATTTTACATTTTT-ATTAAAATAGACAATAATTGAATGTTTATCTTCGAGAAACGT
* * * * *
6928 GAAGAGAAAATCATTCATTGACAAAAAAAGTCCATTTATAGTCACCCATTCCTTCAAAAG
65 GAAGA-AAAAGCATTCATTGGCAAGAAAAGTCCATTTATAGTCTCTCATTCCTTCAAAAG
6988 NNNNNNNNNN
Statistics
Matches: 238, Mismatches: 48, Indels: 18
0.78 0.16 0.06
Matches are distributed among these distances:
170 9 0.04
171 221 0.93
172 8 0.03
ACGTcount: A:0.36, C:0.14, G:0.12, T:0.36
Consensus pattern (170 bp):
AGTTGAATTATTTTACATTTTTATTAAAATAGACAATAATTGAATGTTTATCTTCGAGAAACGTG
AAGAAAAAGCATTCATTGGCAAGAAAAGTCCATTTATAGTCTCTCATTCCTTCAAAAGTCTTATT
ACTTACTTTAAATGGCTTTATAAGCAAATAATTGATTTTA
Found at i:8685 original size:171 final size:170
Alignment explanation
Indices: 8457--9256 Score: 439
Period size: 171 Copynumber: 4.7 Consensus size: 170
8447 NNNNNNNNAT
** * * * *
8457 GCATTCATTGGTAAGAAAAGTTTATTTATAGTCACCCATTCCTTTAAAAGCCTTATTACTCT-TT
1 GCATTCATTGGTAAGAAAAGTCAATTTATAGTCTCTCATTTCTTCAAAAG-CTTATTACT-TGTT
*********** * * *
8521 TTAAATAGTTTTATAATCTNNNNNNNNNNTTTAAGTTGAATTTTTTTACATTTTTTATTAAAATA
64 TTAAATAGTTTTATAATCCCATAATTGATTTTAAGTTGAATTATTTTACATATTTTATTAAAACA
*
8586 AATTATAATTGAATGT-T-TGCCTGGAGAAACGA-GAAGAAAAAA
129 AATAATAATTGAATGTCTAT-CCTGG-GAAAC-ATGAAGAAAAAA
* *
8628 GCATTCATTGGTTAGAAAAGTCAATTTATAGTCTCTCATTTCTTCAAAAGTCTTATTACTTGCTT
1 GCATTCATTGGTAAGAAAAGTCAATTTATAGTCTCTCATTTCTTCAAAAG-CTTATTACTTGTTT
* * * * * *
8693 TAACTGGCTTTATCAGCCCATAATTGATTTTAAGTTGAATTATTTTACATATTTTATTAAAACAG
65 TAAATAGTTTTATAATCCCATAATTGATTTTAAGTTGAATTATTTTACATATTTTATTAAAACAA
* *
8758 ATAATAATTGAATGTCTATCTTGGGAAACATGACGAAAAAA
130 ATAATAATTGAATGTCTATCCTGGGAAACATGAAGAAAAAA
* * ** *
8799 GCATTCATTGGCAAGAAAAGTCCATTTACCGTCTCTCA-GTCTTTCAAAAGCTTTATTACTTGTT
1 GCATTCATTGGTAAGAAAAGTCAATTTATAGTCTCTCATTTC-TTCAAAAGC-TTATTACTTGTT
** * ********
8863 TTAAATAGTTTTATAATCAAATAATTGATTTTAAGTTAAATT-TTTTNNNNNNNNNNT-TTAAAA
64 TTAAATAGTTTTATAATCCCATAATTGATTTTAAGTTGAATTATTTT--ACATATTTTATTAAAA
* * * * * ** *
8926 TAGACAATAATTAAATGTCTAT-TTCAAGAAACGTGAA-AAGAAAA
127 CAAATAATAATTGAATGTCTATCCT-GGGAAACATGAAGAA-AAAA
* * * * * ************
8970 TCATTCATTGATAAGAAAAGTCCATTTATAGTCACTCATTCCTTCAAAAGCCTNNNNNNNNNNNN
1 GCATTCATTGGTAAGAAAAGTCAATTTATAGTCTCTCATTTCTTCAAAAG-CTTATTACTTGTTT
**** * * * *
9035 NNNNTGGTTTTATAATCTCATAATTGATTTTAAGTTGAA-TATTTTAGAT-TTTTCATTACAACA
65 TAAATAGTTTTATAATCCCATAATTGATTTTAAGTTGAATTATTTTACATATTTT-ATTAAAACA
* * * * **
9098 GACT-ATAATTAAATGTCT-GCCTTGAGAAATGTGAAG-AAAAA
129 -AATAATAATTGAATGTCTATCC-TGGGAAACATGAAGAAAAAA
* * * * * * *
9139 GTATTCATTGATAAGAAAAGTCTATTTATAGTCAAC-CATTT-TTGCAAAAGCCTTATTTCTCGC
1 GCATTCATTGGTAAGAAAAGTCAATTTATAGTC-TCTCATTTCTT-CAAAAG-CTTATTACTTGT
* * *
9202 TTTAAATAGTTTTCTAATCTCATAATTGATTTTAAGTTAAATT-TTTTA-ATATTTT
63 TTTAAATAGTTTTATAATCCCATAATTGATTTTAAGTTGAATTATTTTACATATTTT
9257 TCATTAANNN
Statistics
Matches: 477, Mismatches: 129, Indels: 48
0.73 0.20 0.07
Matches are distributed among these distances:
168 5 0.01
169 88 0.18
170 48 0.10
171 327 0.69
172 8 0.02
173 1 0.00
ACGTcount: A:0.34, C:0.12, G:0.11, T:0.39
Consensus pattern (170 bp):
GCATTCATTGGTAAGAAAAGTCAATTTATAGTCTCTCATTTCTTCAAAAGCTTATTACTTGTTTT
AAATAGTTTTATAATCCCATAATTGATTTTAAGTTGAATTATTTTACATATTTTATTAAAACAAA
TAATAATTGAATGTCTATCCTGGGAAACATGAAGAAAAAA
Found at i:13982 original size:171 final size:171
Alignment explanation
Indices: 13482--14855 Score: 1389
Period size: 171 Copynumber: 8.0 Consensus size: 171
13472 GGCTTTTAAA
** * * * * *
13482 GACTATAAATAAACTTTTCTTACTAATGAATGCATTTTTT-TACATATTTCTCTA-GATAGACAT
1 GACTATAAATGGACTTTTCTTGCCAATGAATAC-TTTTTTCTTCATGTTTCTC-AGGATAGACAT
* * * * *
13545 TCAATTATTGTCTGTTTTGATCAAAAATGTAAAACAATTCAACTTAAAATCAATTCTGGGATTAT
64 TCAATTATTGTCTGTTTTAATGAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTAT
* * * * * *
13610 AAAACTATTTAAAGCGTGTAACATGACCTTTGAAGGAATGAGA
129 AAAACTATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATGAGT
* * * *** * * * ** *
13653 GACTATAAATGGA-TGTTTCTTTCAAATAAATGGGTTTCTCTACATGTATCTCAGGGCAAACACT
1 GACTATAAATGGACT-TTTCTTGCCAATGAATACTTTTTTCTTCATGTTTCTCAGGATAGACA-T
* * * *
13717 T-AATTATAGTCTGTTTTAATGAAAAATCT-GAAATATTCAACTTAAAATCAATTATGAGATTAT
64 TCAATTATTGTCTGTTTTAATGAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTAT
* *
13780 AAAACTATTTAAAGTGAGTAATAAAGCTTTTGAAGGAATGAGT
129 AAAACTATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATGAGT
* *
13823 GACTATAAATGGACTTTTCTTGCCAATGAATACTTTTTTCTTTATGTTTCTCAGGATAGATATTC
1 GACTATAAATGGACTTTTCTTGCCAATGAATACTTTTTTCTTCATGTTTCTCAGGATAGACATTC
* * * * * * *
13888 AATTATTGTCTTTTTTAATTAAAAATATAAAAAAATTTAAGTTAAAATCATTTATTAGATTATAA
66 AATTATTGTCTGTTTTAATGAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAA
* * *
13953 TACCATTTAAAACGAGTAATAAGGCTTTTGAAGGAATGAGT
131 AACTATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATGAGT
* * * * * *
13994 TACTTTATATGGACTTTTCTTGCCAATGAATATTTTTTTCTTCACGTTTCT-TGAGATAGACATT
1 GACTATAAATGGACTTTTCTTGCCAATGAATACTTTTTTCTTCATGTTTCTCAG-GATAGACATT
* * * *
14058 CAATTATTGTCTGTTTTAAT-ACATAATATAAAAAAATTTAACTTAAAATCAATTATTAGATTAT
65 CAATTATTGTCTGTTTTAATGA-AAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTAT
** * * *
14122 AAAACTATTTAAAATGAGTACTAAGACTTTTGAAGGAATGGGT
129 AAAACTATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATGAGT
* * * * * *
14165 GACTATAAATAGACTTTTCTTGGCAATAAATA-TGTTTTTTTTCATGTTTCTTGAGG-TAAACAT
1 GACTATAAATGGACTTTTCTTGCCAATGAATACT-TTTTTCTTCATGTTTC-TCAGGATAGACAT
* * * *
14228 TCAATTATAGTCTGTTTTAATGAAAAATTTAAAAAAAATCAACTTAAAATCAATTATGAGATTAG
64 TCAATTATTGTCTGTTTTAATGAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTAT
* *
14293 AAAACCATTTAAAGCGAGTAATAAGGCTTTTGCAA-AAATG-GTT
129 AAAACTATTTAAAGCGAGTAATAAGGCTTTTG-AAGGAATGAG-T
** *
14336 GACTATAAATAAACTTTTTCTTGCCAATGAATACTTTTTTCTTCATGTTTCTCAAGG-CAGACAT
1 GACTATAAATGGAC-TTTTCTTGCCAATGAATACTTTTTTCTTCATGTTTCTC-AGGATAGACAT
* * * * *
14400 TTAATTATAGTCTGTTTTAATGAAAAATCT-AAAATATTCAACTTAAAATTAATTATGAGATTAT
64 TCAATTATTGTCTGTTTTAATGAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTAT
* * * * * *
14464 CAAACCATTTAAAGCAAGCAATAAGGTTTTTGAAGGAATGGGT
129 AAAACTATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATGAGT
*
14507 GACTATAAATGGACTTTTCTTGCCAATGAATGA-TTTTCTCTTCATGTTTCTC-GAGATAGACAT
1 GACTATAAATGGACTTTTCTTGCCAATGAAT-ACTTTTTTCTTCATGTTTCTCAG-GATAGACAT
* ** * * * **
14570 TCAATTATTGTCTATTTTAAACAAAAATGTAAAACAATTTAACTTAAAACCAATTATTTGATTAT
64 TCAATTATTGTCTGTTTTAATGAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTAT
* * * * * *
14635 AAAACTATTTAAAACAAATAATAAAGCTTTTGAAGGACT-AGGA
129 AAAACTATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATGA-GT
* * * * * * *
14678 GACTATAAATTGACTTTTCTTGTCAATAAAT-GTTTGTTTCATCATATTT-TCCAAGATAGACAT
1 GACTATAAATGGACTTTTCTTGCCAATGAATACTTT-TTTCTTCATGTTTCT-CAGGATAGACAT
* * * * * * *
14741 TCAATTATTTTCTGTTTTAATAAAAAATGTAAAATAATTTAACTTAAAATCAATTTTGGGCTTAT
64 TCAATTATTGTCTGTTTTAATGAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTAT
* *
14806 AAAACAATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATGAGA
129 AAAACTATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATGAGT
14849 GACTATA
1 GACTATA
14856 NNNNNNNNNN
Statistics
Matches: 1005, Mismatches: 168, Indels: 60
0.82 0.14 0.05
Matches are distributed among these distances:
168 1 0.00
169 3 0.00
170 215 0.21
171 708 0.70
172 76 0.08
173 2 0.00
ACGTcount: A:0.38, C:0.11, G:0.13, T:0.38
Consensus pattern (171 bp):
GACTATAAATGGACTTTTCTTGCCAATGAATACTTTTTTCTTCATGTTTCTCAGGATAGACATTC
AATTATTGTCTGTTTTAATGAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAA
AACTATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATGAGT
Found at i:14533 original size:513 final size:514
Alignment explanation
Indices: 13482--14855 Score: 1600
Period size: 513 Copynumber: 2.7 Consensus size: 514
13472 GGCTTTTAAA
** * * ** *
13482 GACTATAAATAAACTTTTCTTACTAATGAATGCATTTT-T-TTACATATTTCTCTAGATAGACAT
1 GACTATAAATGGACTTTTCTTGCCAATGAATG-ATTTTCTCTT-CACGTTTCTCGAGATAGACAT
* * * **
13545 TCAATTATTGTCTGTTTTGAT-CAAAAATGTAAAACAATTCAACTTAAAATCAATTCTGGGATTA
64 TCAATTATTGTCTGTTTTAATACAAAAATGTAAAACAATTTAACTTAAAATCAATTATTAGATTA
* * * * * *
13609 TAAAACTATTTAAAGCGTGTAAC-ATGACCTTTGAAGGAATGAGAGACTATAAATGGA-TGTTTC
129 TAAAACTATTTAAAACGAGT-ACTAAGACTTTTGAAGGAATGGGAGACTATAAATAGACT-TTTC
** * * * * * * *
13672 TT-TCAAATAAATGGGTTTCTCTACATGTATCTCAGGGCAAACACTT-AATTATAGTCTGTTTTA
192 TTGTC-AATAAATATGTTTTTTTTCATGTTTCTTAAGGTAAACA-TTCAATTATAGTCTGTTTTA
* * * *
13735 ATGAAAAATCT-GAAATATTCAACTTAAAATCAATTATGAGATTATAAAACTATTTAAAGTGAGT
255 ATGAAAAATCTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACAATTTAAAGCGAGT
* * **
13799 AATAAAGCTTTTGAAGGAATGAGTGACTATAAATGGACTTTTCTTGCCAATGAATACTTTTTTCT
320 AATAAGGCTTTTGAAGAAATGAGTGACTATAAATAAACTTTTCTTGCCAATGAATACTTTTTTCT
* * * * * * * *
13864 TTATGTTTCTCAGGATAGATATTCAATTATTGTCTTTTTTAATTAAAAATATAAAAAAATTTAAG
385 TCATGTTTCTCAGGACAGACATTCAATTATAGTCTGTTTTAATGAAAAATATAAAAAAATTCAAC
* * * *
13929 TTAAAATCATTTATTAGATTATAATACCATTTAAAACGAGTAATAAGGCTTTTGAAGGAATGAGT
450 TTAAAATCAATTATGAGATTATAATACCATTTAAAACAAGCAATAAGGCTTTTGAAGGAATGAGT
* * * * *
13994 TACTTTATATGGACTTTTCTTGCCAATGAAT-ATTTTTTTCTTCACGTTTCTTGAGATAGACATT
1 GACTATAAATGGACTTTTCTTGCCAATGAATGA-TTTTCTCTTCACGTTTCTCGAGATAGACATT
* * *
14058 CAATTATTGTCTGTTTTAATAC-ATAATATAAAAAAATTTAACTTAAAATCAATTATTAGATTAT
65 CAATTATTGTCTGTTTTAATACAAAAATGTAAAACAATTTAACTTAAAATCAATTATTAGATTAT
* *
14122 AAAACTATTTAAAATGAGTACTAAGACTTTTGAAGGAATGGGTGACTATAAATAGACTTTTCTTG
130 AAAACTATTTAAAACGAGTACTAAGACTTTTGAAGGAATGGGAGACTATAAATAGACTTTTCTTG
* *
14187 GCAATAAATATGTTTTTTTTCATGTTTCTTGAGGTAAACATTCAATTATAGTCTGTTTTAATGAA
195 TCAATAAATATGTTTTTTTTCATGTTTCTTAAGGTAAACATTCAATTATAGTCTGTTTTAATGAA
* * * *
14252 AAATTTAAAAAAAATCAACTTAAAATCAATTATGAGATTAGAAAACCATTTAAAGCGAGTAATAA
260 AAATCTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACAATTTAAAGCGAGTAATAA
14317 GGCTTTTGCAA-AAATG-GTTGACTATAAATAAACTTTTTCTTGCCAATGAATACTTTTTTCTTC
325 GGCTTTTG-AAGAAATGAG-TGACTATAAATAAAC-TTTTCTTGCCAATGAATACTTTTTTCTTC
* * *
14380 ATGTTTCTCAAGG-CAGACATTTAATTATAGTCTGTTTTAATGAAAAATCT-AAAATATTCAACT
387 ATGTTTCTC-AGGACAGACATTCAATTATAGTCTGTTTTAATGAAAAATATAAAAAAATTCAACT
* * * *
14443 TAAAATTAATTATGAGATTATCAA-ACCATTTAAAGCAAGCAATAAGGTTTTTGAAGGAATGGGT
451 TAAAATCAATTATGAGATTAT-AATACCATTTAAAACAAGCAATAAGGCTTTTGAAGGAATGAGT
*
14507 GACTATAAATGGACTTTTCTTGCCAATGAATGATTTTCTCTTCATGTTTCTCGAGATAGACATTC
1 GACTATAAATGGACTTTTCTTGCCAATGAATGATTTTCTCTTCACGTTTCTCGAGATAGACATTC
* * *
14572 AATTATTGTCTATTTTAA-ACAAAAATGTAAAACAATTTAACTTAAAACCAATTATTTGATTATA
66 AATTATTGTCTGTTTTAATACAAAAATGTAAAACAATTTAACTTAAAATCAATTATTAGATTATA
* * * * * *
14636 AAACTATTTAAAACAAATAATAA-AGCTTTTGAAGGACTAGGAGACTATAAATTGACTTTTCTTG
131 AAACTATTTAAAACGAGTACTAAGA-CTTTTGAAGGAATGGGAGACTATAAATAGACTTTTCTTG
* * * * * **
14700 TCAAT-AA-ATGTTTGTTTCATCATATTT-TCCAAGATAGACATTCAATTATTTTCTGTTTTAAT
195 TCAATAAATATGTTT-TTT-TTCATGTTTCT-TAAGGTAAACATTCAATTATAGTCTGTTTTAAT
* * * * * * *
14762 AAAAAATGTAAAATAATTTAACTTAAAATCAATTTTGGGCTTATAAAACAATTTAAAGCGAGTAA
257 GAAAAATCTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACAATTTAAAGCGAGTAA
* *
14827 TAAGGCTTTTGAAGGAATGAGAGACTATA
322 TAAGGCTTTTGAAGAAATGAGTGACTATA
14856 NNNNNNNNNN
Statistics
Matches: 731, Mismatches: 109, Indels: 43
0.83 0.12 0.05
Matches are distributed among these distances:
510 1 0.00
511 14 0.02
512 215 0.29
513 425 0.58
514 73 0.10
515 3 0.00
ACGTcount: A:0.38, C:0.11, G:0.13, T:0.38
Consensus pattern (514 bp):
GACTATAAATGGACTTTTCTTGCCAATGAATGATTTTCTCTTCACGTTTCTCGAGATAGACATTC
AATTATTGTCTGTTTTAATACAAAAATGTAAAACAATTTAACTTAAAATCAATTATTAGATTATA
AAACTATTTAAAACGAGTACTAAGACTTTTGAAGGAATGGGAGACTATAAATAGACTTTTCTTGT
CAATAAATATGTTTTTTTTCATGTTTCTTAAGGTAAACATTCAATTATAGTCTGTTTTAATGAAA
AATCTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACAATTTAAAGCGAGTAATAAG
GCTTTTGAAGAAATGAGTGACTATAAATAAACTTTTCTTGCCAATGAATACTTTTTTCTTCATGT
TTCTCAGGACAGACATTCAATTATAGTCTGTTTTAATGAAAAATATAAAAAAATTCAACTTAAAA
TCAATTATGAGATTATAATACCATTTAAAACAAGCAATAAGGCTTTTGAAGGAATGAGT
Done.