Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018402908.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_5957.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2732
ACGTcount: A:0.34, C:0.14, G:0.16, T:0.36


Found at i:884 original size:21 final size:22

Alignment explanation


    Indices: 859--902  Score: 72
    Period size: 21  Copynumber: 2.0  Consensus size: 22

        849 GAGTAGCTAA

                                  
        859 TTTAAGTTATTTTA-GTTAAAT
          1 TTTAAGTTATTTTATGTTAAAT

                           *      
        880 TTTAAGTTATTTTATTTTAAAT
          1 TTTAAGTTATTTTATGTTAAAT

             
        902 T
          1 T

        903 ACTTTAAGAG


Statistics
Matches: 21,  Mismatches: 1, Indels: 1
        0.91            0.04        0.04

Matches are distributed among these distances:
  21   14  0.67
  22    7  0.33

ACGTcount: A:0.32, C:0.00, G:0.07, T:0.61


Consensus pattern (22 bp):   
TTTAAGTTATTTTATGTTAAAT
Done.