Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018402909.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_5958.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3391
ACGTcount: A:0.27, C:0.16, G:0.20, T:0.37


Found at i:3280 original size:11 final size:11

Alignment explanation


    Indices: 3253--3283  Score: 55
    Period size: 10  Copynumber: 2.9  Consensus size: 11

       3243 GGGTGAGCAT

                       
       3253 GGGTCGGTTTC
          1 GGGTCGGTTTC

                       
       3264 -GGTCGGTTTC
          1 GGGTCGGTTTC

                      
       3274 GGGTCGGTTT
          1 GGGTCGGTTT

       3284 TTCATCAAAA


Statistics
Matches: 19,  Mismatches: 0, Indels: 2
        0.90            0.00        0.10

Matches are distributed among these distances:
  10   10  0.53
  11    9  0.47

ACGTcount: A:0.00, C:0.16, G:0.45, T:0.39


Consensus pattern (11 bp):   
GGGTCGGTTTC
Done.