Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018402912.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_5960.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4903
ACGTcount: A:0.31, C:0.19, G:0.18, T:0.32


Found at i:1607 original size:24 final size:24

Alignment explanation


    Indices: 1536--1608  Score: 76
    Period size: 24  Copynumber: 3.0  Consensus size: 24

       1526 TGTTCAGATC

                   *      *  *     *
       1536 ATTACGAATCATATTCTTAATCAA
          1 ATTACGACTCATATCCTGAATCAG

                            *        
       1560 ATTACTG-CTCATATCTTGAATCAG
          1 ATTAC-GACTCATATCCTGAATCAG

                       *            
       1584 ATTACGACTCAGATCCTGAATCAG
          1 ATTACGACTCATATCCTGAATCAG

             
       1608 A
          1 A

       1609 CGCCAACTTA


Statistics
Matches: 40,  Mismatches: 7, Indels: 4
        0.78            0.14        0.08

Matches are distributed among these distances:
  23    1  0.03
  24   38  0.95
  25    1  0.03

ACGTcount: A:0.36, C:0.21, G:0.11, T:0.33


Consensus pattern (24 bp):   
ATTACGACTCATATCCTGAATCAG
Done.