Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018402918.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_5966.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 888

Length: 1481
ACGTcount: A:0.34, C:0.14, G:0.11, T:0.35

Warning! 82 characters in sequence are not A, C, G, or T


Found at i:929 original size:21 final size:22

Alignment explanation


    Indices: 899--940  Score: 68
    Period size: 21  Copynumber: 2.0  Consensus size: 22

        889 GCCTTTGGAA

                 *                
        899 ATTTGTAAAAAAAA-TCCATTC
          1 ATTTGGAAAAAAAAGTCCATTC

                                 
        920 ATTTGGAAAAAAAAGTCCATT
          1 ATTTGGAAAAAAAAGTCCATT

        941 TACAGTCACC


Statistics
Matches: 19,  Mismatches: 1, Indels: 1
        0.90            0.05        0.05

Matches are distributed among these distances:
  21   13  0.68
  22    6  0.32

ACGTcount: A:0.48, C:0.12, G:0.10, T:0.31


Consensus pattern (22 bp):   
ATTTGGAAAAAAAAGTCCATTC
Done.