Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018402919.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_5967.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 634

Length: 1058
ACGTcount: A:0.39, C:0.12, G:0.12, T:0.33

Warning! 42 characters in sequence are not A, C, G, or T


Found at i:733 original size:171 final size:171

Alignment explanation


    Indices: 543--1058  Score: 548
    Period size: 171  Copynumber: 3.0  Consensus size: 171

        533 NNNNNNNNNN

                                    **        **          *    *        *    
        543 AAAATCAATTATGAGATTATAAAATTATTTAAAATGAGTAATAAGGATTTTTAAGGAATGGGAGA
          1 AAAATCAATTATGAGATTATAAAACCATTTAAAACAAGTAATAAGGCTTTTCAAGGAATGAGAGA

                                            *           *         *   *      
        608 CTATAAATGGACTTTTCTT-TCAAATGAATGGTTTTTTCTACACGTTTTCTAAGACAGTCATTCA
         66 CTATAAATGGACTTTTCTTCT-AAATGAATGGCTTTTTCTACACATTTTCTAAGGCAGACATTCA

                                          *         * 
        672 ATTATAGTCTATTTTAATGAAAAATGTAAACCAATTCAACAT
        130 ATTATAGTCTATTTTAATGAAAAATGTAAAACAATTCAACTT

                 *      *       *            *               * *   *   * *   
        714 AAAATTAATTATAAGATTATCAAACCATTTAAAGCAAGTAATAAGGCTTCTGAAGAAATAAAAGA
          1 AAAATCAATTATGAGATTATAAAACCATTTAAAACAAGTAATAAGGCTTTTCAAGGAATGAGAGA

                    *        *                     *  *                      
        779 CTATAAATAGACTTTTCCTCTAAATGAATGGCTTTTTCTTCATATTTTCTAAGGCAGACATTCAA
         66 CTATAAATGGACTTTTCTTCTAAATGAATGGCTTTTTCTACACATTTTCTAAGGCAGACATTCAA

                     **             *     *    *     
        844 TTATAGTCTGCTTTAATGAAAAATATAAAAAAATTTAACTT
        131 TTATAGTCTATTTTAATGAAAAATGTAAAACAATTCAACTT

                                    ************                  *     *    
        885 AAAATCAATTATGAGATTATAAAANNNNNNNNNNNNAGTAATAAGGCTTTTCAAAGAATGTGAGA
          1 AAAATCAATTATGAGATTATAAAACCATTTAAAACAAGTAATAAGGCTTTTCAAGGAATGAGAGA

                                     *    *                *  *   *  *       
        950 CTATAAATGGACTTTTCTTCTAAATAAATGACTTTTTCTACACATTTGCTGAGGTAGGCATTCAA
         66 CTATAAATGGACTTTTCTTCTAAATGAATGGCTTTTTCTACACATTTTCTAAGGCAGACATTCAA

                           *                         
       1015 TTATAGTCTATTTTAGTGAAAAATGTAAAACAATTCAACTT
        131 TTATAGTCTATTTTAATGAAAAATGTAAAACAATTCAACTT

               
       1056 AAA
          1 AAA


Statistics
Matches: 276,  Mismatches: 68, Indels: 2
        0.80            0.20        0.01

Matches are distributed among these distances:
 171  275  1.00
 172    1  0.00

ACGTcount: A:0.40, C:0.11, G:0.12, T:0.34


Consensus pattern (171 bp):   
AAAATCAATTATGAGATTATAAAACCATTTAAAACAAGTAATAAGGCTTTTCAAGGAATGAGAGA
CTATAAATGGACTTTTCTTCTAAATGAATGGCTTTTTCTACACATTTTCTAAGGCAGACATTCAA
TTATAGTCTATTTTAATGAAAAATGTAAAACAATTCAACTT
Done.