Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018402927.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_5974.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1922
ACGTcount: A:0.39, C:0.12, G:0.14, T:0.35


Found at i:356 original size:172 final size:170

Alignment explanation


    Indices: 57--1922  Score: 1983
    Period size: 172  Copynumber: 10.9  Consensus size: 170

         47 ATATGTTCCT

                        *     **            *            *    *    *         
         57 TAAGGCTTTTGATGGAATAAGTGACTATAAATGGACTTTTCTTGCTAATGGATGCCTTTTTCTTC
          1 TAAGGCTTTTGAAGGAATGGGTGACTATAAATAGACTTTTCTTGCCAATGAATGCGTTTTTCTTC

                       *                 *                                   
        122 ATGTTTCTCGATGTAGACATTCAATTATAATC-GATTTTAACCAAAAATGTAAAACAAATTAAAC
         66 ATGTTTCT-GAGGTAGACATTCAATTATAGTCTG-TTTTAACCAAAAATGTAAAA-AAATTAAAC

                          *                *     *     
        186 TTAAAATCAATTTTCAGATTATAAAACTATTAAAAGTAAGTAA
        128 TTAAAATCAATTTTGAGATTATAAAACTATTTAAAGTGAGTAA

                      *                     *                   *  *         
        229 TAAGGCTTTTAAAGGAATGGGTGACTATAAATGGACTTTTCTTGCCAATGAACGCATTTTTCTTC
          1 TAAGGCTTTTGAAGGAATGGGTGACTATAAATAGACTTTTCTTGCCAATGAATGCGTTTTTCTTC

             *         **                   *      ***      *              * 
        294 ACGTTTCATGATTTAGACATTCAATTATAGTCAGTTTTAGTAAAAAATATAAAAATAATTAAATT
         66 ATGTTTC-TGAGGTAGACATTCAATTATAGTCTGTTTTAACCAAAAATGTAAAAA-AATTAAACT

                                              ** *  * 
        359 TAAAATCAATTTTGAGATTATAAAACTATTTAAAACGTGTGA
        129 TAAAATCAATTTTGAGATTATAAAACTATTTAAAGTGAGTAA

                       *             *                   *   *  ****     *   
        401 TAAGGCTTTTGCAGGAATGGGTGACAATAAATAGACTTTTCTTGCTAATAAACATTTTTTTGTTC
          1 TAAGGCTTTTGAAGGAATGGGTGACTATAAATAGACTTTTCTTGCCAATGAATGCGTTTTTCTTC

                     *                    * * *     *      *          *      
        466 ATGTTTCTCAAGGTA-AGCATTCAATTATAATTTATTTTAGCCAAAAGTGTAAAAAAAATAAACT
         66 ATGTTTCT-GAGGTAGA-CATTCAATTATAGTCTGTTTTAACCAAAAATGTAAAAAAATTAAACT

                  *                   *   *        *  
        530 TAAAATAAATTTTGAGATTATAAAACCATTGAAAGTGAGAAA
        129 TAAAATCAATTTTGAGATTATAAAACTATTTAAAGTGAGTAA

            **            *     *                             *     *   *    
        572 CGAGGCTTTTGAA-AAAGTGAGTGACTATAAATAGACTTTTCTTGCCAATCAATGCATTTCTCTT
          1 TAAGGCTTTTGAAGGAA-TGGGTGACTATAAATAGACTTTTCTTGCCAATGAATGCGTTTTTCTT

              *        ***  *                                * *     *  *    
        636 CACGTTTCTCGCCATACACATTCAATTATAGTCTGTTTTAACCAAAAATATGAAAAAGTTCAACT
         65 CATGTTTCT-GAGGTAGACATTCAATTATAGTCTGTTTTAACCAAAAATGTAAAAAAATTAAACT

                  *    *         *                    
        701 TAAAATAAATTATGAGATTATCAAACTATTTAAAGTGAGTAA
        129 TAAAATCAATTTTGAGATTATAAAACTATTTAAAGTGAGTAA

                 *        *    * *          *          * *   *    *        * 
        743 TAAGGTTTTTGAAGCAATGAGAGACTATAAATGGACTTTTCTTTCAAATCAATGGGTTTTTCTAC
          1 TAAGGCTTTTGAAGGAATGGGTGACTATAAATAGACTTTTCTTGCCAATGAATGCGTTTTTCTTC

             **          *  *                 *               *       **   * 
        808 ACATTTCTTGAGGCAGGCATTCAATTATAGTCTGGTTTAACCAAAAATG-CAAAAAATGCAACAT
         66 ATGTTTC-TGAGGTAGACATTCAATTATAGTCTGTTTTAACCAAAAATGTAAAAAAATTAAACTT

                      *              *        *      
        872 AAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAA
        130 AAAATCAATTTTGAGATTATAAAACTATTTAAAGTGAGTAA

                               *                              *              
        913 TAAGGCTTTTGAAGGAATGAGTGACTATAAAT-GAACTTTTCTTGCCAATAAATGTC-TTTTTCT
          1 TAAGGCTTTTGAAGGAATGGGTGACTATAAATAG-ACTTTTCTTGCCAATGAATG-CGTTTTTCT

                *     **          *        *          *       *         * *  
        976 TCATTTTTCACAAGGTAGACATCCAATTATAATCTGTTTTAATCAAAAATATAAAAAAAACTGAA
         64 TCATGTTTC-TGAGGTAGACATTCAATTATAGTCTGTTTTAACCAAAAATGT-AAAAAAATTAAA

                 *                          *    *      
       1041 CTTAAGATCAATTTTGAGATTATAAAACTATTGAAAGCGAGTAA
        127 CTTAAAATCAATTTTGAGATTATAAAACTATTTAAAGTGAGTAA

                              *                              *    *          
       1085 TAAGGCTTTTGAAGGAATAGGTGACTATAAATAGACTTTTCTTGCCAATAAATGTGTTTTTCTTC
          1 TAAGGCTTTTGAAGGAATGGGTGACTATAAATAGACTTTTCTTGCCAATGAATGCGTTTTTCTTC

                    *  *   *          *  *                                   
       1150 ATGTTTCTTATAGTAAACATTCAATTTTAATCTGTTTTAACCAAAAATGTAAAAAAAATTAAACT
         66 ATGTTTCTGA-GGTAGACATTCAATTATAGTCTGTTTTAACCAAAAATGT-AAAAAAATTAAACT

                       *              *   *           
       1215 TAAAATCAATTATGAGATTATAAAACCATTGAAAGTGAGTAA
        129 TAAAATCAATTTTGAGATTATAAAACTATTTAAAGTGAGTAA

                             *  *           *                     *          
       1257 TAAGGCTTTTGAAGGAACGGATGACTATAAATGGACTTTTCTTGCCAATGAATGTGTTTTTCTTC
          1 TAAGGCTTTTGAAGGAATGGGTGACTATAAATAGACTTTTCTTGCCAATGAATGCGTTTTTCTTC

                         *       *          *              *             *   
       1322 ACT-TTTCTAGAGTTAGACATCCAATTATAGTTTGTTTTAACCAAAACTGTAAAAAATATTGAAC
         66 A-TGTTTCT-GAGGTAGACATTCAATTATAGTCTGTTTTAACCAAAAATGTAAAAAA-ATTAAAC

            *                * *                       
       1386 ATAAAATCAATTTTGAGGTAATAAAACTATTTAAAGTGAGTAA
        128 TTAAAATCAATTTTGAGATTATAAAACTATTTAAAGTGAGTAA

                                                                             
       1429 TAAGGCTTTTGAAGGAATGGGTGACTATAAATAGACTTTTCTTGCCAATGAATGCGTTTTTCTTC
          1 TAAGGCTTTTGAAGGAATGGGTGACTATAAATAGACTTTTCTTGCCAATGAATGCGTTTTTCTTC

                     *      *                                           *    
       1494 ATGTTTCTTAAGGTAGGCATTCAATTATAGTCTGTTTTAACCAAAAATGTAAAAACAATTGAACT
         66 ATGTTTC-TGAGGTAGACATTCAATTATAGTCTGTTTTAACCAAAAATGTAAAAA-AATTAAACT

            *         **          *   *   *           
       1559 CAAAATCAATAATGAGATTATAGAACAATTAAAAGTGAGTAA
        129 TAAAATCAATTTTGAGATTATAAAACTATTTAAAGTGAGTAA

               *                                        *           *    *   
       1601 TAAAGCTTTTGGAA-GAATGGGTGACTATAAATAGACTTTTCTTACCAATGAATGCATTTTCCTT
          1 TAAGGCTTTT-GAAGGAATGGGTGACTATAAATAGACTTTTCTTGCCAATGAATGCGTTTTTCTT

               *                       *               *                  *  
       1665 CATATTTCTTGAGGTAGACATTCAATTGTAGT-TAGTTTTAA-AAAAAATGTAAAAAAAATTGAA
         65 CATGTTTC-TGAGGTAGACATTCAATTATAGTCT-GTTTTAACCAAAAATGT-AAAAAAATTAAA

              *                               *          
       1728 CTCAAAATCAA-TTTGAGATTATAAAACCT-TTTCAAGTGAGTAA
        127 CTTAAAATCAATTTTGAGATTATAAAA-CTATTTAAAGTGAGTAA

                        *      *    *                   *        * *         
       1771 TAAGGCTTTTGATGGAATGAGTGAATATAAATAGACTTTTCTTGTCAATGAATACCTTTTTCTTC
          1 TAAGGCTTTTGAAGGAATGGGTGACTATAAATAGACTTTTCTTGCCAATGAATGCGTTTTTCTTC

                     * *     *      *    *  *                                
       1836 ATGTTTCTCTATGTAGAAATTCAAGTATAATCGGTTTTAACCAAAAATGTAAAAAAATTAAACTT
         66 ATGTTTCT-GAGGTAGACATTCAATTATAGTCTGTTTTAACCAAAAATGTAAAAAAATTAAACTT

                                  
       1901 AAAATCAATTTTGAGATTATAA
        130 AAAATCAATTTTGAGATTATAA


Statistics
Matches: 1423,  Mismatches: 240, Indels: 63
        0.82            0.14        0.04

Matches are distributed among these distances:
 169    4  0.00
 170  268  0.19
 171  321  0.23
 172  820  0.58
 173   10  0.01

ACGTcount: A:0.39, C:0.12, G:0.14, T:0.35


Consensus pattern (170 bp):   
TAAGGCTTTTGAAGGAATGGGTGACTATAAATAGACTTTTCTTGCCAATGAATGCGTTTTTCTTC
ATGTTTCTGAGGTAGACATTCAATTATAGTCTGTTTTAACCAAAAATGTAAAAAAATTAAACTTA
AAATCAATTTTGAGATTATAAAACTATTTAAAGTGAGTAA

Done.