Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018402931.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_5978.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 663

Length: 1106
ACGTcount: A:0.34, C:0.19, G:0.16, T:0.31


Found at i:36 original size:23 final size:23

Alignment explanation


    Indices: 10--54  Score: 81
    Period size: 23  Copynumber: 2.0  Consensus size: 23

          1 GGAATGGTG

                                   
         10 TGTCACCCCATTGGGACATGGCT
          1 TGTCACCCCATTGGGACATGGCT

                           *      
         33 TGTCACCCCATTGGGCCATGGC
          1 TGTCACCCCATTGGGACATGGC

         55 CTATCACGCT


Statistics
Matches: 21,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  23   21  1.00

ACGTcount: A:0.16, C:0.33, G:0.27, T:0.24


Consensus pattern (23 bp):   
TGTCACCCCATTGGGACATGGCT

Found at i:61 original size:23 final size:23

Alignment explanation


    Indices: 12--61  Score: 73
    Period size: 23  Copynumber: 2.2  Consensus size: 23

          2 GAATGGTGTG

                                * *
         12 TCACCCCATTGGGACATGGCTTG
          1 TCACCCCATTGGGACATGGCCTA

                         *         
         35 TCACCCCATTGGGCCATGGCCTA
          1 TCACCCCATTGGGACATGGCCTA

                
         58 TCAC
          1 TCAC

         62 GCTTAATTAA


Statistics
Matches: 24,  Mismatches: 3, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  23   24  1.00

ACGTcount: A:0.18, C:0.36, G:0.22, T:0.24


Consensus pattern (23 bp):   
TCACCCCATTGGGACATGGCCTA
Done.