Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018402945.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_606.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 618

Length: 1030
ACGTcount: A:0.30, C:0.08, G:0.11, T:0.27

Warning! 240 characters in sequence are not A, C, G, or T


Found at i:530 original size:171 final size:165

Alignment explanation


    Indices: 240--703  Score: 489
    Period size: 162  Copynumber: 2.8  Consensus size: 165

        230 NNNNNNNNNN

                                   *                                         
        240 AAGCGAGTAATAAGGCTTTCGAAAGCATGGGTGACTATAAATGGACTTTTCTTA-TCAATGGATA
          1 AAGCGAGTAATAAGGCTTTCGAAGGCATGGGTGACTATAAATGGACTTTTCTTACT-AATGGATA

                              *        *                  *  *               
        304 TCT-TTTACTTCATGTTTTTGAAGATAAACATTCAATTATAATCTGGTTGAATAAAAAATATAAA
         65 TCTATTT-CTTCAT-TTTCTGAAGATAGACATTCAATTATAATCTGTTTTAATAAAAAATATAAA

                             *                          
        368 AAAACTCAAATGAAAATCAATTATAACGTTAT-AAAATCATTTA
        128 AAAACT----T-AAAATAAATTATAACGTTATAAAAAT-ATTTA

               *          *               *      *                           
        411 AAGTGAGTAATAAGACTTTCGAAGGCATGGATGACTACAAATGGACTTTTCTTACTAATGGATAT
          1 AAGCGAGTAATAAGGCTTTCGAAGGCATGGGTGACTATAAATGGACTTTTCTTACTAATGGATAT

                                                                           **
        476 CTATTTCTTCATATTTCTGAAGATAGACATTCAATTATAATCTGTTTTAATAAAAAA-AT---TT
         66 CTATTTCTTCAT-TTTCTGAAGATAGACATTCAATTATAATCTGTTTTAATAAAAAATATAAAAA

                               *               *
        537 AACTTAAAATAAATTATAAGGTTATAAAAATATTTG
        130 AACTTAAAATAAATTATAACGTTATAAAAATATTTA

             *  *              *            * *             *   *            
        573 AGGCAAGTAATAAGGCTTTTGAAGGCATGGGTAATTATAAATGGACTTATC-CAGCTAATGGATA
          1 AAGCGAGTAATAAGGCTTTCGAAGGCATGGGTGACTATAAATGGACTTTTCTTA-CTAATGGATA

                          *        * **       *             *                
        637 TC-ATTTTCTTTACGTTTTCT-AGGGCAGACATTTAATTATAATCTGTATTAATAAAAAATATAA
         65 TCTA-TTTC-TT-CATTTTCTGAAGATAGACATTCAATTATAATCTGTTTTAATAAAAAATATAA

                
        700 AAAA
        127 AAAA

        704 GTTCAACTGN


Statistics
Matches: 248,  Mismatches: 34, Indels: 27
        0.80            0.11        0.09

Matches are distributed among these distances:
 161    2  0.01
 162  112  0.45
 163   15  0.06
 164    2  0.01
 166    1  0.00
 167    4  0.02
 170    2  0.01
 171  106  0.43
 172    4  0.02

ACGTcount: A:0.40, C:0.11, G:0.14, T:0.35


Consensus pattern (165 bp):   
AAGCGAGTAATAAGGCTTTCGAAGGCATGGGTGACTATAAATGGACTTTTCTTACTAATGGATAT
CTATTTCTTCATTTTCTGAAGATAGACATTCAATTATAATCTGTTTTAATAAAAAATATAAAAAA
ACTTAAAATAAATTATAACGTTATAAAAATATTTA

Done.