Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018402952.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_613.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1682
ACGTcount: A:0.22, C:0.07, G:0.08, T:0.22

Warning! 679 characters in sequence are not A, C, G, or T


Found at i:1274 original size:172 final size:171

Alignment explanation


    Indices: 536--1305  Score: 517
    Period size: 172  Copynumber: 4.5  Consensus size: 171

        526 NNNNNNNNNN

                           *                     *      * *   *      *  *    
        536 AAAGTGAGTAATAAGGCTTTTGAAGG-AGTGGGTGACAATAAATAGTCTTCTCTTGCAAAAGAAT
          1 AAAGTGAGTAATAAGACTTTTGAAGGTA-TGGGTGACTATAAATGGACTTTTCTTGCCAATGAAT

                        * **      *                *  *           *      *   
        600 GAC-TTTTTCTTTACGTTTCTTGAGGTAGACATTCAATTCTACTCTG-TTTAACTAAAAATATA-
         65 G-CTTTTTTCTTCATATTTCTTAAGGTAGACATTCAATTATAGTCTGTTTTAACAAAAAATGTAC

                *       *  *             *    *     *    
        662 AAAGCAATTCAACTTAAAATCAATTATGCCATTACAAAACTATTT
        129 AAA-AAATTCAAATTTAAATCAATTATG-GATTATAAAACCATTT

                *          * **********                                *     
        707 AAAGCGAGTAATAAGGCNNNNNNNNNNATGGGTGACTATAAATGGACTTTTCTTGCCAAGGAATG
          1 AAAGTGAGTAATAAGACTTTTGAAGGTATGGGTGACTATAAATGGACTTTTCTTGCCAATGAATG

                  *      *     *                 *    *                      
        772 CTTTTTGCTTCATGTTTCTCAAGGTAGACATTCAATTTTAGTTTGTTTTAACAAAAAATGTACAA
         66 CTTTTTTCTTCATATTTCTTAAGGTAGACATTCAATTATAGTCTGTTTTAACAAAAAATGTACAA

             *                *********         **    
        837 ATAATTCAAATTTAAATNNNNNNNNNNATTATAAAAATATTT
        131 AAAATTCAAATTTAAAT-CAATTATGGATTATAAAACCATTT

               *           *          *  *    *   *               *         *
        879 AAATTGAGTAATAAGGCTTTTGAAGGAATTGGTGTCTAGAAATGGACTTTTCTTACCAATGAATT
          1 AAAGTGAGTAATAAGACTTTTGAAGGTATGGGTGACTATAAATGGACTTTTCTTGCCAATGAATG

             *  *        *       * **               *        *  *            
        944 CCTTGTTCTGT-ACATTTCTTGATATAGACATTCAATTATTGTCTGTTTAAATAAAAAATGTA-A
         66 CTTTTTTCT-TCATATTTCTTAAGGTAGACATTCAATTATAGTCTGTTTTAACAAAAAATGTACA

                   *  *  *                  *          
       1007 AAAAATTGAACTTAAAATCAATTATGGCATTACAAAACCATTT
        130 AAAAATTCAAATTTAAATCAATTATGG-ATTATAAAACCATTT

              *****************                        *                     
       1050 AANNNNNNNNNNNNNNNNNTTGAAGGTATGGGTGACTATAAATAGACTTTTCTTGCCAATGAATG
          1 AAAGTGAGTAATAAGACTTTTGAAGGTATGGGTGACTATAAATGGACTTTTCTTGCCAATGAATG

                   *                             *                         * 
       1115 CTTTTTTTTTCATATTTCTTAAGGTAGACATTCAATTCTAGTCTGTTTTAACAAAAAATGTACGA
         66 CTTTTTTCTTCATATTTCTTAAGGTAGACATTCAATTATAGTCTGTTTTAACAAAAAATGTACAA

             *                    *    *              
       1180 AGAATTCAAATTTAAATCAATTTTGAGGTTATAAAACCATTT
        131 AAAATTCAAATTTAAATCAATTATG-GATTATAAAACCATTT

                   *  *                    *                                 
       1222 AAAGTGATTAGTAAGACTTTTGAAGGTATGGATGACTATAAATGGACTTTTCTTGCCAATGAATG
          1 AAAGTGAGTAATAAGACTTTTGAAGGTATGGGTGACTATAAATGGACTTTTCTTGCCAATGAATG

            *            *     
       1287 ATTTTTTCTTCATGTTTCT
         66 CTTTTTTCTTCATATTTCT

       1306 CNNNNNNNNN


Statistics
Matches: 436,  Mismatches: 153, Indels: 19
        0.72            0.25        0.03

Matches are distributed among these distances:
 170    2  0.00
 171  199  0.46
 172  230  0.53
 173    5  0.01

ACGTcount: A:0.34, C:0.11, G:0.14, T:0.36


Consensus pattern (171 bp):   
AAAGTGAGTAATAAGACTTTTGAAGGTATGGGTGACTATAAATGGACTTTTCTTGCCAATGAATG
CTTTTTTCTTCATATTTCTTAAGGTAGACATTCAATTATAGTCTGTTTTAACAAAAAATGTACAA
AAAATTCAAATTTAAATCAATTATGGATTATAAAACCATTT
Done.