Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018402965.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_626.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 724

Length: 1207
ACGTcount: A:0.27, C:0.11, G:0.09, T:0.28

Warning! 307 characters in sequence are not A, C, G, or T


Found at i:790 original size:175 final size:171

Alignment explanation


    Indices: 408--795  Score: 492
    Period size: 171  Copynumber: 2.2  Consensus size: 171

        398 NNNNNNNNNN

                                              *   *                          
        408 ATTAGCAAGAAAAGTCCATTTATAGTCACCCATTTCTTAAAAACTATTATTACTCGCTTTAAATG
          1 ATTAGCAAGAAAAGTCCATTTATAGTCACCCATTCCTTCAAAACTATTATTACTCGCTTTAAATG

             *                         *  *                                  
        473 GTTTTATAATCTCAAAATTTGTTTAAATTTGAATTCTTCATACATTTTTAGTTAAAACAGATTAT
         66 GCTTTATAATCTCAAAATTTGTTTAAAGTTCAATTCTTCATACATTTTTAGTTAAAACAGATTAT

                *    *                 * *           
        538 AATTTAATGTCAACCTCAAGAAACGTGCAGAAAAGGCATTC
        131 AATTAAATGGCAACCTCAAGAAACGTGAAAAAAAGGCATTC

               *         * *                           *  *                  
        579 ATTGGCAAGAAAATTTCATTTATAGTCACCCATTCCTTTCAAAGC-CTTATTACTCGCTTTAAAT
          1 ATTAGCAAGAAAAGTCCATTTATAGTCACCCATTCC-TTCAAAACTATTATTACTCGCTTTAAAT

                                      *                **   *     *          
        643 GGCTTTATAATCTCAAAATTAT-TTTTAAGTTCAACTTTCTTTTTTACTTTTTTGGTTAAAACAG
         65 GGCTTTATAATCTCAAAATT-TGTTTAAAGTTCAA--TTC-TTCATACATTTTTAGTTAAAACAG

                            ***         *             *    
        707 ATTATAATTAAATGGCTTTCTCAAGAAATGTGAATAAAAAGGTATTC
        126 ATTATAATTAAATGGCAACCTCAAGAAACGTGAA-AAAAAGGCATTC

                                                      
        754 ATTAGCAAGAAAAGTCCATTTATAGTCACCCATTCCTTCAAA
          1 ATTAGCAAGAAAAGTCCATTTATAGTCACCCATTCCTTCAAA

        796 NNNNNNNNNN


Statistics
Matches: 184,  Mismatches: 27, Indels: 9
        0.84            0.12        0.04

Matches are distributed among these distances:
 171   78  0.42
 172    7  0.04
 173    3  0.02
 174   53  0.29
 175   43  0.23

ACGTcount: A:0.36, C:0.16, G:0.11, T:0.38


Consensus pattern (171 bp):   
ATTAGCAAGAAAAGTCCATTTATAGTCACCCATTCCTTCAAAACTATTATTACTCGCTTTAAATG
GCTTTATAATCTCAAAATTTGTTTAAAGTTCAATTCTTCATACATTTTTAGTTAAAACAGATTAT
AATTAAATGGCAACCTCAAGAAACGTGAAAAAAAGGCATTC
Done.