Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_018402974.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_636.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 57371
ACGTcount: A:0.28, C:0.10, G:0.10, T:0.27
Warning! 14606 characters in sequence are not A, C, G, or T
Found at i:413 original size:21 final size:20
Alignment explanation
Indices: 383--428 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 20
373 AGCAATGCTT
383 TTCTTCTTTTCTT-TTGCTTC
1 TTCTTCTTTTCTTCTT-CTTC
*
403 TCTCTTGTTTTCTTCTTCTTC
1 T-TCTTCTTTTCTTCTTCTTC
424 TTCTT
1 TTCTT
429 TAAGTTCCAG
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
20 5 0.22
21 16 0.70
22 2 0.09
ACGTcount: A:0.00, C:0.26, G:0.04, T:0.70
Consensus pattern (20 bp):
TTCTTCTTTTCTTCTTCTTC
Found at i:1445 original size:34 final size:35
Alignment explanation
Indices: 1382--1461 Score: 110
Period size: 34 Copynumber: 2.3 Consensus size: 35
1372 AAGCTTTTAT
*
1382 AATGGCTTTTCATAGGCTCAGCCACAACCTTCAAC
1 AATGGCTTTTCAAAGGCTCAGCCACAACCTTCAAC
*
1417 AATGGCTTTTCAAAGGGC-C-GCCACAACCTTCAAT
1 AATGGCTTTTCAAA-GGCTCAGCCACAACCTTCAAC
*
1451 AATGGTTTTTC
1 AATGGCTTTTC
1462 CCGAGATCAA
Statistics
Matches: 41, Mismatches: 3, Indels: 3
0.87 0.06 0.06
Matches are distributed among these distances:
34 24 0.59
35 14 0.34
36 3 0.07
ACGTcount: A:0.28, C:0.28, G:0.16, T:0.29
Consensus pattern (35 bp):
AATGGCTTTTCAAAGGCTCAGCCACAACCTTCAAC
Found at i:2694 original size:170 final size:168
Alignment explanation
Indices: 2363--3462 Score: 729
Period size: 170 Copynumber: 6.4 Consensus size: 168
2353 GCCAATATTC
* * *
2363 CCAAGGTAGACATTCAATTAGAATATGTTTTAACTAAAAATATTAAAAAATTCAACTTAAAATCA
1 CCAAGGTAGACATTCAATTATAATCTG-TTTAACAAAAAATA-TAAAAAATTCAACTTAAAATCA
* ** * * * *
2428 ATTATGAGAATATAAATTCATTTAAAGCGAGAAATAAGGCTTTTAAAGGAATGGGTCATTATAAA
64 ATTATGAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTTTT-AAGGAATGGGTGACTATAAA
* * * **
2493 TAGACTTTTCTTACTAATAAATGATTTTTTCTTCACATTTT
128 TGGACTTTTCTTACCAATGAATGGCTTTTTCTTCACATTTT
* * * *
2534 TCAAGGCAGACATTCAATTATAATCTGTTTAACCAAAAATGTAGAAAAATTCAACTTAAAATCAA
1 CCAAGGTAGACATTCAATTATAATCTGTTTAACAAAAAATATA-AAAAATTCAACTTAAAATCAA
* * * * *
2599 TTATCAGATTGTAAAACCATTTAAAGTGATTAATAAGGCTTCTAAGGGGATGGGTGACTATAAAT
65 TTATGAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTTTTAA-GGAATGGGTGACTATAAAT
* *
2664 GGACTTTTCTTCCCAATGAATGCCTTTTTCTTCACATTTT
129 GGACTTTTCTTACCAATGAATGGCTTTTTCTTCACATTTT
* * * * * * *
2704 TCAAGGTAAATAATCAATTATAATCTACTTTAATAAAAAAATATAAAAAAATTTAACTTAAAATC
1 CCAAGGTAGACATTCAATTATAATCT-GTTTAA-CAAAAAATAT-AAAAAATTCAACTTAAAATC
********** * * * * * ** **
2769 NNNNNNNNNNTTATGAAACCATTTAAAGCGAGTAATAAGGATTTCGAAAGCTTGCATGACTATAA
63 AATTATGAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTTT-TAAGGAATGGGTGACTATAA
* ********** * ** * *
2834 GTGGACTTTNNNNNNNNNNGGATTACTTTTACTTCACATTTC
127 ATGGACTTTTCTTACCAATGAATGGCTTTTTCTTCACATTTT
* * * * *
2876 CCAAGGTAAACATTCAATTATAATATTTTTAATC-AGAAATATAAAGCAATTCAACTTAAAATCA
1 CCAAGGTAGACATTCAATTATAATCTGTTTAA-CAAAAAATATAAA-AAATTCAACTTAAAATCA
* ** *********
2940 ATTATGAGATTAGAAAATTATTTAAAGTGAGTAATAAGGCTTTTTAA-GANNNNNNNNNNTATAA
64 ATTATGAGATTATAAAACCATTTAAAGTGAGTAATAAGGC-TTTTAAGGA-ATGGGTGACTATAA
* * * *
3004 ATGAACTTTTCTTCCCAGTGAATGGCTTTTTGTTCACATTTT
127 ATGGACTTTTCTTACCAATGAATGGCTTTTTCTTCACATTTT
* * * * * * * *
3046 CCAAAGAAGACATTCAATTATAACCTTTTTTCAA-AAAAAATACAAAAAATTTTAATTTAAAATT
1 CCAAGGTAGACATTCAATTATAATC-TGTTT-AACAAAAAATATAAAAAA-TTCAACTTAAAATC
* * **********
3110 AATTATGAGATTATAACACCATTAAAAGTGAGTAATAAGGCTTTTGANNNNNNNNNNGACTATAA
63 AATTATGAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTTTT-AAGGAATGGGTGACTATAA
* ** * *
3175 ATGAACTTTTCTTAGTAATG-ATGGCTTGTTCTTCACATTTC
127 ATGGACTTTTCTTACCAATGAATGGCTTTTTCTTCACATTTT
* * * *
3216 CCAA-GTCAGACATTCAATTATGATCTGTTTTAATAAAAAATATAAAAAAATTCAATTTAAAATG
1 CCAAGGT-AGACATTCAATTATAATCTG-TTTAACAAAAAATAT-AAAAAATTCAACTTAAAATC
********** *
3280 AATTATGAGATTATAAAACCATTTAAAGTNNNNNNNNNNGCTTTTGAAGGAATGGGTGACTATAT
63 AATTATGAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTTTT-AAGGAATGGGTGACTATAA
*
3345 ATGGACTTTTCTTTCCAATGAATGGCTTTTTCTT--CATGTTT
127 ATGGACTTTTCTTACCAATGAATGGCTTTTTCTTCACAT-TTT
* * * *
3386 CACGAGGTAGACATTCAATTATAATTTGTTTAACCAAAAATGTAAAAAAATTCAACTTAAAATCA
1 C-CAAGGTAGACATTCAATTATAATCTGTTTAACAAAAAATAT-AAAAAATTCAACTTAAAATCA
3451 ATTATGAGATTA
64 ATTATGAGATTA
3463 CAANNNNNNN
Statistics
Matches: 708, Mismatches: 198, Indels: 47
0.74 0.21 0.05
Matches are distributed among these distances:
169 15 0.02
170 409 0.58
171 164 0.23
172 117 0.17
173 3 0.00
ACGTcount: A:0.38, C:0.12, G:0.11, T:0.34
Consensus pattern (168 bp):
CCAAGGTAGACATTCAATTATAATCTGTTTAACAAAAAATATAAAAAATTCAACTTAAAATCAAT
TATGAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTTTTAAGGAATGGGTGACTATAAATGG
ACTTTTCTTACCAATGAATGGCTTTTTCTTCACATTTT
Found at i:5619 original size:171 final size:171
Alignment explanation
Indices: 5284--5633 Score: 391
Period size: 171 Copynumber: 2.0 Consensus size: 171
5274 NNNNNNNNNN
* * * *
5284 CTTAAAATCAATTATGAGATTATAAAACTATTTAAAGTGAGTAACAAGGCTTTTTAAGAAATTGG
1 CTTAAAATCAATTATGAGATTACAAAACCATTTAAAGTGAGTAACAAGGCTTTTGAAGAAATGGG
* * * * * * *
5349 TGACTATAAATGAACTTTTTTTGTTAGTGAATGGCTTTTTATTCACGTTTCCCAAGGCATACATT
66 TGACTATAAATGAACTTTTTTAGTCAATGAATGGCCTTTTATTCACATTTCCCAAGCCAGACATT
** ** * *
5414 CAATTATAATCTATTTTCCCGAAAAATGTAAAAAATTTTAA
131 CAATTATAATCTATTTTAACGAAAAAAATAAAAAAATTCAA
* * ** * *
5455 TTTAAAATTAATTATGAGATTACAACGCCA-TTAGAAGTGAGTAATAAGGCTTTTGAAGGAATGG
1 CTTAAAATCAATTATGAGATTACAAAACCATTTA-AAGTGAGTAACAAGGCTTTTGAAGAAATGG
* * * *
5519 GTGATTATAAATGAACTTTTCTTAG-CAATG-ATGGCCTTTTCTTCACATTTCGCAAGCCAGATA
65 GTGACTATAAATGAACTTTT-TTAGTCAATGAATGGCCTTTTATTCACATTTCCCAAGCCAGACA
* *
5582 TTCAATTATAATCTGTTTTAATGAAACAAAATAAAAAAATTCAA
129 TTCAATTATAATCTATTTTAACGAAA-AAAATAAAAAAATTCAA
5626 CTTAAAAT
1 CTTAAAAT
5634 GAATNNNNNN
Statistics
Matches: 146, Mismatches: 30, Indels: 6
0.80 0.16 0.03
Matches are distributed among these distances:
170 51 0.35
171 92 0.63
172 3 0.02
ACGTcount: A:0.38, C:0.12, G:0.14, T:0.36
Consensus pattern (171 bp):
CTTAAAATCAATTATGAGATTACAAAACCATTTAAAGTGAGTAACAAGGCTTTTGAAGAAATGGG
TGACTATAAATGAACTTTTTTAGTCAATGAATGGCCTTTTATTCACATTTCCCAAGCCAGACATT
CAATTATAATCTATTTTAACGAAAAAAATAAAAAAATTCAA
Found at i:6137 original size:171 final size:171
Alignment explanation
Indices: 5839--7185 Score: 1019
Period size: 170 Copynumber: 7.9 Consensus size: 171
5829 NNNNATAATG
* * * * * **
5839 AATTAAAATATGTTTTAATGAAAAAT-GTAAAAAATTTCAACTTAAAATCAACTATGAGATTGTA
1 AATTATAATCTGTTTTAATCAAAAATATTAAAAAA-TTCAACTTAAAATCAATTATGAGATTACA
* * ** * *
5903 AAACCATTTAAAGCGCGTAATAAGGCTTTCAAAGGCATGGGTGACTATAAATGGA-TATTTCTTA
65 AAACCATTTAAAGTGAGTAATAAGGCTTTTGAAGGAATGTGTGACTATAAATGGACT-TTTCTTA
* * * *
5967 TTAATGAATAACTTTTTCTTTACATTTCCCAAGGTAGACATTC
129 TCAATGAATGACTTTTTCTTCACATTTCCCAAGGCAGACATTC
* * * * *
6010 AATTAGAATTTGTTTTAATCAAAAATATTAAAAAATTCAAATTAAAGTCAATTATGAGAATA-AA
1 AATTATAATCTGTTTTAATCAAAAATATTAAAAAATTCAACTTAAAATCAATTATGAGATTACAA
* * * * *
6074 AATCCATTTAAAGCGAGCAATAAGGCTTTTGAAGGAATGTGTAATTATAAATGGACTTTTCTTAC
66 AA-CCATTTAAAGTGAGTAATAAGGCTTTTGAAGGAATGTGTGACTATAAATGGACTTTTCTTAT
* ** * * * *
6139 CAATGAATGATTTTTTCTTCATGTTTTCTAGGGAAGACATTC
130 CAATGAATGACTTTTTCTTCACATTTCCCAAGGCAGACATTC
* * * * * *
6181 AATTATAATCTG-TTTGACCAAAACT-GTAGAAAAATTCAACTTAAAATCAATTATCATATTACA
1 AATTATAATCTGTTTTAATCAAAAATATTA-AAAAATTCAACTTAAAATCAATTATGAGATTACA
* * * *
6244 AAACCATTTAAAGTGATTAATAAGGCTTCT-AAGGGGATGTGTGACTATAAATGAACCTTTT-TT
65 AAACCATTTAAAGTGAGTAATAAGGCTTTTGAA-GGAATGTGTGACTATAAATGGA-CTTTTCTT
* * ** ** *
6307 -TCCAATGAATGTCTTTTTATTCATGTTTTTCGA-G-ATGA-ATAATC
128 AT-CAATGAATGACTTTTTCTTCACATTTCCCAAGGCA-GACAT--TC
* *
6351 AATTATAATCTGTTTTAATTAAAAATATTAAAAAATTCAACTT-AAATCAATTATGAGATTATAA
1 AATTATAATCTGTTTTAATCAAAAATATTAAAAAATTCAACTTAAAATCAATTATGAGATTACAA
* * * * * *
6415 AACCATTTAAAGGGAGTAATAAGG-TTTTCGAAAG-CTTTCATGACTATAAGTGGAC-TTT-TTA
66 AACCATTTAAAGTGAGTAATAAGGCTTTT-GAAGGAATGT-GTGACTATAAATGGACTTTTCTTA
* * * * * *
6476 TGCTAATGGATTACTTTTACTTCACATTTCTCAAGGCAAATATTC
129 T-C-AATGAATGACTTTTTCTTCACATTTCCCAAGGCAGACATTC
* * * * *
6521 AATTATAATATATTTTAATTAGAAATA-TAAAGCAATTCAACTTAAAATCAATTATGAGATTACA
1 AATTATAATCTGTTTTAATCAAAAATATTAAA-AAATTCAACTTAAAATCAATTATGAGATTACA
* *
6585 AAACTATTTAAAGTGAGTAATAAGGCTTCTT-AAGGAAT-TGGTGACTATAAATGAACTTTTCTT
65 AAACCATTTAAAGTGAGTAATAAGGCTT-TTGAAGGAATGT-GTGACTATAAATGGACTTTTCTT
* * * * * * **
6648 GTTAGTGAATGGCTTTTTATTCACGTTTCCCTTGGCAGACA-TC
128 ATCAATGAATGACTTTTTCTTCACATTTCCCAAGGCAGACATTC
* * *
6691 AATTATAATCTGTTTT--TCATGAAAAT-TGAAAAATATTTTAATTTAAAATCAATTATGAGATT
1 AATTATAATCTGTTTTAATCA--AAAATATTAAAAA-A-TTCAACTTAAAATCAATTATGAGATT
* * * * * *
6753 ACAACATCATTAAAAGTGAGTAATAAGGCTTTTGAAGGAATGAGTGACTGTAAATGAACTTTTCT
62 ACAAAACCATTTAAAGTGAGTAATAAGGCTTTTGAAGGAATGTGTGACTATAAATGGACTTTTCT
* * * * * * ** *
6818 TAACAATG-ATGGCCTTTTCTTCATATTTTCTAATCCAAACATTC
127 TATCAATGAATGACTTTTTCTTCACATTTCCCAAGGCAGACATTC
* * * * * ********** *
6862 AATTACAATATGTTTTAATGAAAAATGTAAAAAAATTCAACTNNNNNNNNNNTATGAGATTA-TA
1 AATTATAATCTGTTTTAATCAAAAATATTAAAAAATTCAACTTAAAATCAATTATGAGATTACAA
* *
6926 AACCATTTAAAGTGAGCAATAAGGCTTTTGAAGGAATAG-GTGACTATATATGGACTTTTCTTAT
66 AACCATTTAAAGTGAGTAATAAGGCTTTTGAAGGAAT-GTGTGACTATAAATGGACTTTTCTTAT
* * * * *
6990 CAATGAATGGCATTTTCTTCA-AGTTTCTCGAGGTAGACATTC
130 CAATGAATGACTTTTTCTTCACA-TTTCCCAAGGCAGACATTC
* * ** * *
7032 AATTATAATCTG-TTTAACCAAAAATA-TAAAAAAGTTTAACTTAAAATCAGCTCTCAGATTACA
1 AATTATAATCTGTTTTAATCAAAAATATTAAAAAA-TTCAACTTAAAATCAATTATGAGATTACA
* * * ** * * *
7095 AAACCATTTAAAATGATTAATAAGGCTTCT-AAGGGGGTGGGTGACTATAAATGCACTTTTCTTG
65 AAACCATTTAAAGTGAGTAATAAGGCTTTTGAA-GGAATGTGTGACTATAAATGGACTTTTCTTA
*
7159 TCAATGAAT-ACCTTTTTCTTCATATTT
129 TCAATGAATGA-CTTTTTCTTCACATTT
7186 TTGAGACAGA
Statistics
Matches: 924, Mismatches: 204, Indels: 97
0.75 0.17 0.08
Matches are distributed among these distances:
168 16 0.02
169 109 0.12
170 403 0.44
171 364 0.39
172 25 0.03
173 7 0.01
ACGTcount: A:0.38, C:0.12, G:0.13, T:0.36
Consensus pattern (171 bp):
AATTATAATCTGTTTTAATCAAAAATATTAAAAAATTCAACTTAAAATCAATTATGAGATTACAA
AACCATTTAAAGTGAGTAATAAGGCTTTTGAAGGAATGTGTGACTATAAATGGACTTTTCTTATC
AATGAATGACTTTTTCTTCACATTTCCCAAGGCAGACATTC
Found at i:6864 original size:341 final size:337
Alignment explanation
Indices: 5839--7215 Score: 1085
Period size: 341 Copynumber: 4.0 Consensus size: 337
5829 NNNNATAATG
* * **
5839 AATTAAAATATGTTTTAATGAAAAATGTAAAAAATTTCAACTTAAAATCAACTATGAGATTGTAA
1 AATTATAATATGTTTTAATGAAAAATGTAAAAAA-TTCAACTTAAAATCAATTATGAGATTACAA
* * * * * *
5904 AACCATTTAAAGCGCGTAATAAGGCTTTCAAAGGCATGGGTGACTATAAATGGA-TATTTCTTAT
65 AACCATTTAAAGTGAGTAATAAGGCTTT-TAAGGAATTGGTGACTATAAATGAACT-TTTCTTAT
* ** * * * * * *
5968 TAATGAATAACTTTTTCTTTACATTTCCCAAGGTAGACATTCAATTAGAATTTGTTTTAATCA-A
128 CAATGAATGGCTTTTTATTCACGTTTCCCGAGGTAGACATTCAATTATAATCTGTTTT--TCATA
* * *
6032 AAATATTAAAAAATTCAAATTAAAGTCAATTATGAGAATAAAAATCCATTTAAAGCGAGCAATAA
191 AAATATTAAAAAATTCAAATTAAAATCAATTATGAGATTAAAAAT-CATTTAAAGCGAGTAATAA
* * * * ** *
6097 GGCTTTTGAAGGAATGTGTAATTATAAATGGACTTTTCTTACCAATGAATGATTTTTTCTTCATG
255 GGCTTTTGAAGGAATGAGTGACTATAAATGGACTTTTCTTAACAATG-ATGAACTTTTCTTCATA
*
6162 TTTTCT-AGGGAAGACATTC
319 TTTTCTAAGGCAA-ACATTC
* * ** * * *
6181 AATTATAATCTG-TTTGACCAAAACTGTAGAAAAATTCAACTTAAAATCAATTATCATATTACAA
1 AATTATAATATGTTTTAATGAAAAATGTA-AAAAATTCAACTTAAAATCAATTATGAGATTACAA
* * *
6245 AACCATTTAAAGTGATTAATAAGGCTTCTAAGGGGA-TGTGTGACTATAAATGAACCTTTT-TT-
65 AACCATTTAAAGTGAGTAATAAGGCTTTTAA-GGAATTG-GTGACTATAAATGAA-CTTTTCTTA
* * ** * *
6307 TCCAATGAATGTCTTTTTATTCATGTTTTTCGAGAT-GA-ATAATCAATTATAATCTG-TTTTAA
127 T-CAATGAATGGCTTTTTATTCACGTTTCCCGAGGTAGACAT--TCAATTATAATCTGTTTTTCA
* * *
6369 TTAAAAATATTAAAAAATTCAACTT-AAATCAATTATGAGATTATAAAACCATTTAAAGGGAGTA
189 -T-AAAATATTAAAAAATTCAAATTAAAATCAATTATGAGATTA-AAAATCATTTAAAGCGAGTA
*** * * * *
6433 ATAAGG-TTTTCGAAAGCTTTCA-TGACTATAAGTGGAC-TTT-TTATGCTAATGGAT-TACTTT
251 ATAAGGCTTTT-G-AAGGAATGAGTGACTATAAATGGACTTTTCTTA-AC-AAT-GATGAACTTT
* *
6493 TACTTCACA-TTTCTCAAGGCAAATATTC
311 T-CTTCATATTTTCT-AAGGCAAACATTC
* * * * *
6521 AATTATAATATATTTTAATTAGAAATATAAAGCAATTCAACTTAAAATCAATTATGAGATTACAA
1 AATTATAATATGTTTTAATGAAAAATGTAAA-AAATTCAACTTAAAATCAATTATGAGATTACAA
* * *
6586 AACTATTTAAAGTGAGTAATAAGGCTTCTTAAGGAATTGGTGACTATAAATGAACTTTTCTTGTT
65 AACCATTTAAAGTGAGTAATAAGGCTT-TTAAGGAATTGGTGACTATAAATGAACTTTTCTTATC
* ** *
6651 AGTGAATGGCTTTTTATTCACGTTTCCCTTGGCAGACA-TCAATTATAATCTGTTTTTCATGAAA
129 AATGAATGGCTTTTTATTCACGTTTCCCGAGGTAGACATTCAATTATAATCTGTTTTTCAT-AAA
* * * * * *
6715 AT-TGAAAAATATTTTAATTTAAAATCAATTATGAGATTACAACATCATTAAAAGTGAGTAATAA
193 ATATTAAAAA-A-TTCAAATTAAAATCAATTATGAGATTA-AAAATCATTTAAAGCGAGTAATAA
* * **
6779 GGCTTTTGAAGGAATGAGTGACTGTAAATGAACTTTTCTTAACAATGATGGCCTTTTCTTCATAT
255 GGCTTTTGAAGGAATGAGTGACTATAAATGGACTTTTCTTAACAATGATGAACTTTTCTTCATAT
**
6844 TTTCTAATCCAAACATTC
320 TTTCTAAGGCAAACATTC
* ********** *
6862 AATTACAATATGTTTTAATGAAAAATGTAAAAAAATTCAACTNNNNNNNNNNTATGAGATTA-TA
1 AATTATAATATGTTTTAATGAAAAATGT-AAAAAATTCAACTTAAAATCAATTATGAGATTACAA
* * * *
6926 AACCATTTAAAGTGAGCAATAAGGCTTTTGAAGGAATAGGTGACTATATATGGACTTTTCTTATC
65 AACCATTTAAAGTGAGTAATAAGGCTTTT-AAGGAATTGGTGACTATAAATGAACTTTTCTTATC
* * * * **
6991 AATGAATGGCATTTTCTTCAAGTTTCTCGAGGTAGACATTCAATTATAATCTGTTTAACCA-AAA
129 AATGAATGGCTTTTTATTCACGTTTCCCGAGGTAGACATTCAATTATAATCTGTTT-TTCATAAA
* * ** * * * ** *
7055 ATA-TAAAAAAGTTTAACTTAAAATCAGCTCTCAGATTACAAAACCATTTAAAATGATTAATAAG
193 ATATTAAAAAA-TTCAAATTAAAATCAATTATGAGATTA-AAAATCATTTAAAGCGAGTAATAAG
* ** * * ** *
7119 GCTTCT-AAGGGGGTGGGTGACTATAAATGCACTTTTCTTGTCAATGAAT-ACCTTTTTCTTCAT
256 GCTTTTGAA-GGAATGAGTGACTATAAATGGACTTTTCTTAACAATG-ATGAAC-TTTTCTTCAT
* * * * *
7182 ATTTT-TGAGACAGATAGTC
318 ATTTTCTAAGGCAAACATTC
7201 AATTATAATATGTTT
1 AATTATAATATGTTT
7216 AACCAAAAGT
Statistics
Matches: 823, Mismatches: 166, Indels: 95
0.76 0.15 0.09
Matches are distributed among these distances:
338 7 0.01
339 130 0.16
340 223 0.27
341 353 0.43
342 97 0.12
343 10 0.01
344 3 0.00
ACGTcount: A:0.38, C:0.12, G:0.13, T:0.36
Consensus pattern (337 bp):
AATTATAATATGTTTTAATGAAAAATGTAAAAAATTCAACTTAAAATCAATTATGAGATTACAAA
ACCATTTAAAGTGAGTAATAAGGCTTTTAAGGAATTGGTGACTATAAATGAACTTTTCTTATCAA
TGAATGGCTTTTTATTCACGTTTCCCGAGGTAGACATTCAATTATAATCTGTTTTTCATAAAATA
TTAAAAAATTCAAATTAAAATCAATTATGAGATTAAAAATCATTTAAAGCGAGTAATAAGGCTTT
TGAAGGAATGAGTGACTATAAATGGACTTTTCTTAACAATGATGAACTTTTCTTCATATTTTCTA
AGGCAAACATTC
Found at i:7064 original size:169 final size:160
Alignment explanation
Indices: 6735--7074 Score: 323
Period size: 169 Copynumber: 2.1 Consensus size: 160
6725 ATTTTAATTT
* *
6735 AAAA-TCAA-TTATGAGATTACAACATCATTAAAAGTGAGTAATAAGGCTTTTGAAGGAATGAGT
1 AAAATTCAACTTATGAGATTACAACACCATTAAAAGTGAGCAATAAGGCTTTTGAAGGAATGAGT
* * * *
6798 GACTGTAAATGAACTTTTCTTAACAATGATGGCCTTTTCTTCATATTTTCTAATCCAAACATTCA
66 GACTATAAATGAACTTTTCTTAACAATGATGGCATTTTCTTCATAGTTTCTAAGCCAAACATTCA
** *
6863 ATTACAATATGTTTTAATGAAAAATGTAAA
131 ATTACAATATGTTTTAACCAAAAATATAAA
* *
6893 AAAATTCAACTNNNNNNNNNNTATGAGATTATAA-ACCATTTAAAGTGAGCAATAAGGCTTTTGA
1 AAAATTCAACT----------TATGAGATTACAACACCATTAAAAGTGAGCAATAAGGCTTTTGA
* * * *
6957 AGGAAT-AGGTGACTATATATGGACTTTTCTTATCAATGAATGGCATTTTCTTCA-AGTTTCTCG
56 AGGAATGA-GTGACTATAAATGAACTTTTCTTAACAATG-ATGGCATTTTCTTCATAGTTTCT-A
** * * *
7020 AGGTAGACATTCAATTATAATCTG-TTTAACCAAAAATATAAA
118 AGCCAAACATTCAATTACAATATGTTTTAACCAAAAATATAAA
* *
7062 AAAGTTTAACTTA
1 AAAATTCAACTTA
7075 AAATCAGCTC
Statistics
Matches: 145, Mismatches: 22, Indels: 29
0.74 0.11 0.15
Matches are distributed among these distances:
158 4 0.03
159 6 0.04
160 1 0.01
168 1 0.01
169 89 0.61
170 44 0.30
ACGTcount: A:0.38, C:0.12, G:0.14, T:0.34
Consensus pattern (160 bp):
AAAATTCAACTTATGAGATTACAACACCATTAAAAGTGAGCAATAAGGCTTTTGAAGGAATGAGT
GACTATAAATGAACTTTTCTTAACAATGATGGCATTTTCTTCATAGTTTCTAAGCCAAACATTCA
ATTACAATATGTTTTAACCAAAAATATAAA
Found at i:8014 original size:171 final size:160
Alignment explanation
Indices: 7693--8027 Score: 348
Period size: 171 Copynumber: 2.0 Consensus size: 160
7683 GTCCATTTAT
* *
7693 AGTCTCCTATTCCTTCAAAAGCCTTATTACTCATTTTAAATTGTTTTATAATGTCATAATTGATT
1 AGTCTCCTATTCCTTCAAAAGCCTTATTACTCATTTTAAATAGTTTTATAATCTCATAATTGATT
* * * * * * * * * *
7758 TTAGGTTGAGTTTTTTTATATTTTTCATTAAAATAGACAATAATTGAAAGTTTACCTTGAGACAT
66 TTAAGCTAAATTTTTTTAAATTTTTCATTAAAACAGACAATAATTGAAAGTCTACCTCGAGAAAC
* *
7823 GTAAAGAAAAAAGTATTCATTTGCAAGAAA
131 GCAAAGAAAAAAGCATTCATTTGCAAGAAA
*
7853 AGNNNNNNNNNNNTCTCTTATTCCTTCAAAAGCCTTATTACTCATTTTAAATAGTTTTATAATCT
1 AG-----------TCTCCTATTCCTTCAAAAGCCTTATTACTCATTTTAAATAGTTTTATAATCT
* ** * *
7918 CATACTTGATTTTAAGCTAAATTTTTTTAAATTTTTGGTTAAAACAGACTATAATTGAATGTCTA
55 CATAATTGATTTTAAGCTAAATTTTTTTAAATTTTTCATTAAAACAGACAATAATTGAAAGTCTA
* * *
7983 CCTCGAGAAACGCAAGGAAACAAGCATTCA-TTGATAAGAAA
120 CCTCGAGAAACGCAAAGAAAAAAGCATTCATTTG-CAAGAAA
8024 AGTC
1 AGTC
8028 CATTTATNNN
Statistics
Matches: 140, Mismatches: 23, Indels: 24
0.75 0.12 0.13
Matches are distributed among these distances:
160 4 0.03
170 3 0.02
171 133 0.95
ACGTcount: A:0.35, C:0.13, G:0.11, T:0.38
Consensus pattern (160 bp):
AGTCTCCTATTCCTTCAAAAGCCTTATTACTCATTTTAAATAGTTTTATAATCTCATAATTGATT
TTAAGCTAAATTTTTTTAAATTTTTCATTAAAACAGACAATAATTGAAAGTCTACCTCGAGAAAC
GCAAAGAAAAAAGCATTCATTTGCAAGAAA
Found at i:9166 original size:169 final size:161
Alignment explanation
Indices: 8991--9308 Score: 354
Period size: 169 Copynumber: 1.9 Consensus size: 161
8981 NNNTAATCTT
** * **
8991 ATAATTGATTTTAAATTGAATTATTT-TAGATTTTTTGTTAAAACAGACTATAATTGAGGGTTTA
1 ATAATTGATTTTAAATTGAATT-TTTATAGATTTTTCATTAAAACAGACAATAATTGAAAGTTTA
* *
9055 CCTTAAGAAACATGAAGAAAA-AGTATTCATTGGCAAGAAAA-ACTATTTATAGTATCGTATTCC
65 CCTTAAGAAACATAAAGAAAACAGTATTCATTGGCAAGAAAAGACTACTTATAGTATCGTATTCC
*
9118 TTCAAAAGCCTTATTACTCGTTTTAAATNNNNNNNNNNTGTC
130 TTCAAAAGCCTCATTACTCGTTTTAAAT----------TGTC
* * * *
9160 ATAATTGATTTTAAGTTGAGTTTTTATAGATTTTTCATTAAAATAGACAATTATTGAAAGTTTAC
1 ATAATTGATTTTAAATTGAATTTTTATAGATTTTTCATTAAAACAGACAATAATTGAAAGTTTAC
* ** * * *
9225 CTTGAGAAATGTAAAGAAAACAGTATTCATTGGCAAGAAAAGTCTACTTATAGTCTCTTATTCCT
66 CTTAAGAAACATAAAGAAAACAGTATTCATTGGCAAGAAAAGACTACTTATAGTATCGTATTCCT
9290 TCAAAAGCCTCATTACTCG
131 TCAAAAGCCTCATTACTCG
9309 CTNNNNNNNN
Statistics
Matches: 128, Mismatches: 18, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
168 3 0.02
169 68 0.53
170 20 0.16
171 37 0.29
ACGTcount: A:0.36, C:0.11, G:0.13, T:0.37
Consensus pattern (161 bp):
ATAATTGATTTTAAATTGAATTTTTATAGATTTTTCATTAAAACAGACAATAATTGAAAGTTTAC
CTTAAGAAACATAAAGAAAACAGTATTCATTGGCAAGAAAAGACTACTTATAGTATCGTATTCCT
TCAAAAGCCTCATTACTCGTTTTAAATTGTC
Found at i:11082 original size:171 final size:171
Alignment explanation
Indices: 10699--11129 Score: 494
Period size: 171 Copynumber: 2.5 Consensus size: 171
10689 AGGCAGACAT
* * * * * * *
10699 TCAATTATAATCTA-TTTAACCAAAACTGTAGAAAAATTCTACTTAAAATCAATTATCAGATTAC
1 TCAATTATAATATATTTTAACTAAAAATATAAAAAAATTCAACTTAAAATCAATTATGAGATTAC
**
10763 AAAACCATTTAAAGTGAATAATAAGGCTTCTAAAGGGATTGGGTGACTACAAATGGACTTTTGTT
66 AAAACCATTTAAAGTGAATAATAAGGCTTCTAAA-GGATTGCATGACTACAAATGGACTTTTGTT
* * ** * *
10828 CCCAATTAATGTCTTTTTCTTCACGTTTTTCGAGGTAAATAA
130 CCCAATGAATGTCTTTTGCTTCACGTTTCCCAAGGTAAACAA
* *
10870 TCAATTATAATATGTTTTAACTAAAAATATAAAAAAATTCAACTTAAAATCAATTATGAGATTAT
1 TCAATTATAATATATTTTAACTAAAAATATAAAAAAATTCAACTTAAAATCAATTATGAGATTAC
* * * * * *
10935 AAAACCATTTAAAGTGAGTAATAAGGCTTTTGAAA-GCTTTCATGACTATAAGTGGACTTTT-TA
66 AAAACCATTTAAAGTGAATAATAAGGCTTCT-AAAGGATTGCATGACTACAAATGGACTTTTGT-
* * * * *
10998 TGCTAATGGAT-TACTTTTGCTTCATGTTTCCCAAGGTAAACAT
129 TCCCAATGAATGT-CTTTTGCTTCACGTTTCCCAAGGTAAACAA
* ** *
11041 TTAATTATAATATATTTTAA-TCAAAAATATAAAGCAATTCAATTTAAAATCAATTATGAGATTA
1 TCAATTATAATATATTTTAACT-AAAAATATAAAAAAATTCAACTTAAAATCAATTATGAGATTA
11105 CAAAACCATTTAAAGTGAATAATAA
65 CAAAACCATTTAAAGTGAATAATAA
11130 NNNNNNNNNN
Statistics
Matches: 220, Mismatches: 35, Indels: 10
0.83 0.13 0.04
Matches are distributed among these distances:
170 3 0.01
171 142 0.65
172 72 0.33
173 3 0.01
ACGTcount: A:0.41, C:0.12, G:0.11, T:0.36
Consensus pattern (171 bp):
TCAATTATAATATATTTTAACTAAAAATATAAAAAAATTCAACTTAAAATCAATTATGAGATTAC
AAAACCATTTAAAGTGAATAATAAGGCTTCTAAAGGATTGCATGACTACAAATGGACTTTTGTTC
CCAATGAATGTCTTTTGCTTCACGTTTCCCAAGGTAAACAA
Found at i:12992 original size:170 final size:169
Alignment explanation
Indices: 12303--13414 Score: 705
Period size: 170 Copynumber: 6.6 Consensus size: 169
12293 NNNNNAAAGG
* * * * ** *
12303 CTTATTGCTCACTTTAAATGGTTTTATAATCTCATAATTCATTTTAAGTCAAAATTTTTTACATT
1 CTTATTACTCACTTTAAATAGTTTTAGAATCTCATAATTAATTTTAAGTTGAATTTTTTTACATT
* * * * * **
12368 TTTCA-TTAAAACATATTATAATTCATTATCTGCCT-AGGGAAA-TGT-AAGGTAAAGGCCA-TC
66 TTT-AGTTAAAACAGATTATAATTGAATGTCTGCCTCA--AAAACTGTGAAGAAAAAGG-CATTC
* * * * **
12428 TTTTCCAAGAAAAGTTCATTTATAGTCACCCATTCTTTCAAAAGT
127 -ATTGCAAGAAAAGTTTA-TTATAGTCACCCATTCCTTCAAAAAC
* * * * *
12473 CTTATTACTCACTTTAAATGGTGTTGGAATCTCATAATTGATTTTAAGTTGAAATTTTTTACATT
1 CTTATTACTCACTTTAAATAGTTTTAGAATCTCATAATTAATTTTAAGTTGAATTTTTTTACATT
* * * * ** * * * *
12538 TTTTGTGAAAACAGATTATAATTGAATGTTTAGCTTGGAAAAC-GTAAAGGAAAAGCCATTCACT
66 TTTAGTTAAAACAGATTATAATTGAATGTCT-GCCTCAAAAACTGTGAAGAAAAAGGCATTCATT
* * * * *
12602 GATAAAACAAAGTTCATT-TAATGTCACCAATTCCTTCAAAAGC
130 G-CAAGA-AAAGTTTATTAT-A-GTCACCCATTCCTTCAAAAAC
* * * **
12645 CTTATTGCGT-ACTTTAAATGGTTTT-GTAATCTCATAATTGATTTTAAGTTGAATTGCTTTACA
1 CTTATTAC-TCACTTTAAATAGTTTTAG-AATCTCATAATTAATTTTAAGTTGAATTTTTTTACA
* * * * * * * * * **
12708 TTTTT-GATTAAAATATATTATAATTGAATG-CTTGTCTTGAGAAAC-ATGAAGCAGAA-GTAAA
64 TTTTTAG-TTAAAACAGATTATAATTGAATGTC-TG-CCTCAAAAACTGTGAAGAAAAAGGCATT
* ** ** **
12769 CTATTGGTATA-AAAAGTTTACTTATAGTCATACAAGCCTTCAAAAGT
126 C-ATT-GCA-AGAAAAGTTTA-TTATAGTCACCCATTCCTTCAAAAAC
** * * * *
12816 CTTATTACTCGTTTTAAATAGTTTTAGAGTCTCGTAATTTATTTTAAGTT-AGATTTTTTT-TAT
1 CTTATTACTCACTTTAAATAGTTTTAGAATCTCATAATTAATTTTAAGTTGA-ATTTTTTTACAT
*
12879 TTTTAGTTAAAACAGATTATAATTGACTGTCTGCCTCAAAAACTGTGAAGAAAAAGGCATTCATT
65 TTTTAGTTAAAACAGATTATAATTGAATGTCTGCCTCAAAAACTGTGAAGAAAAAGGCATTCA-T
12944 TGCAAGAAAAGTTTAGTTATAGTCACCCA-TCCTCTCAAAAAC
129 TGCAAGAAAAGTTTA-TTATAGTCACCCATTCCT-TCAAAAAC
* * * * * *
12986 CTTATTAATCACTTTAAATGGTTTT-GTAATTTGATCATTAATGTTAAGTTGAATTTTTTTACAT
1 CTTATTACTCACTTTAAATAGTTTTAG-AATCTCATAATTAATTTTAAGTTGAATTTTTTTACAT
* * * * * *
13050 TTTTGGTT-AAACAAATTATAATTGAATGACTACCTCGAGAAAC-GTGAAGAAAAAGTCATTCAT
65 TTTTAGTTAAAACAGATTATAATTGAATGTCTGCCTC-AAAAACTGTGAAGAAAAAGGCATTCAT
* *
13113 AGTCAAG---A----A--A-AGTCATCCATTCCTT-AAAAAGC
129 TG-CAAGAAAAGTTTATTATAGTCACCCATTCCTTCAAAAA-C
* * *
13145 CTTATTACTTACTTTAAATAGTTTTATAATCTCATAATTCATTTTAAGTTGAATTTTTTTACATT
1 CTTATTACTCACTTTAAATAGTTTTAGAATCTCATAATTAATTTTAAGTTGAATTTTTTTACATT
* * **
13210 TTTCA-TTAAAACAGATCATAATTGAATGTCTGGCTTGGAAAA-TGTGAAG-AAAAGGCCA-TCA
66 TTT-AGTTAAAACAGATTATAATTGAATGTCT-GCCTCAAAAACTGTGAAGAAAAAGG-CATTCA
* * *
13271 TTGCTAGAAAAAGTTTATTTATTGTCACCCATTCCTTCAAAAGC
128 TTGCAAG-AAAAGTTTA-TTATAGTCACCCATTCCTTCAAAAAC
* * * * * * *
13315 CTTATTACTCACTTTTAATGGTGTT-GTAATCTTATAATTGATTTTAAATTGAAATTTTTT-CTA
1 CTTATTACTCACTTTAAATAGTTTTAG-AATCTCATAATTAATTTTAAGTTGAATTTTTTTAC-A
** * *
13378 TTTTTCCTGAAAACATATTATAATTGAATGTCTGCCT
64 TTTTTAGTTAAAACAGATTATAATTGAATGTCTGCCT
13415 TGGGAAACAT
Statistics
Matches: 741, Mismatches: 142, Indels: 119
0.74 0.14 0.12
Matches are distributed among these distances:
158 8 0.01
159 80 0.11
160 36 0.05
161 2 0.00
162 1 0.00
163 1 0.00
166 1 0.00
167 1 0.00
169 19 0.03
170 341 0.46
171 117 0.16
172 130 0.18
173 4 0.01
ACGTcount: A:0.34, C:0.13, G:0.12, T:0.40
Consensus pattern (169 bp):
CTTATTACTCACTTTAAATAGTTTTAGAATCTCATAATTAATTTTAAGTTGAATTTTTTTACATT
TTTAGTTAAAACAGATTATAATTGAATGTCTGCCTCAAAAACTGTGAAGAAAAAGGCATTCATTG
CAAGAAAAGTTTATTATAGTCACCCATTCCTTCAAAAAC
Found at i:13285 original size:329 final size:331
Alignment explanation
Indices: 12451--13407 Score: 924
Period size: 329 Copynumber: 2.9 Consensus size: 331
12441 GTTCATTTAT
* * * * * *
12451 AGTCACCCATTCTTTCAAAAGTCTTATTACTCACTTTAAATGGTGTTGGAATCTCATAATTGATT
1 AGTCATCCATTCCTTCAAAAGTCTTATTACTCACTTTAAATAGTTTTAGAATCTCATAATTCATT
* *
12516 TTAAGTTGAAATTTTTTACATTTTT-TGTGAAAACAGATTATAATTGAATGTTTAGCTTGGAAAA
66 TTAAGTTGAATTTTTTTACATTTTTAT-T-AAAACAGATTATAATTGAATGTCT-GCTTGGAAAA
* * * * * * *
12580 CGTAAAGGAAAA-GCCATTCACTGATAAAACAAAGTTCATTTA-ATGTCACCAATTCCTTCAAAA
128 TGTGAA-GAAAAGGCCATTCATTGCTAGAA-AAAGTTTATTTATA-GTCACCCATTCCTTCAAAA
** * **
12643 GCCTTATTGCGT-ACTTTAAATGGTTTTGTAATCTCATAATTGATTTTAAGTTGAATTGCTTTAC
190 GCCTTATT-AATCACTTTAAATGGTTTTGTAAT-TTATAATTGATTTTAAGTTGAATTTTTTTAC
** * * *
12707 ATTTTTGATTAAA-ATATATTATAATTGAATGCTTGTCTTGAGAAACATGAAGCAGAAGTAAACT
253 ATTTTTGATTAAACA-A-ATTATAATTGAATGCTTACCTCGAGAAACATGAAGAAAAAGT--ACT
* *
12771 ATTGGTATAAAAAGTTTACTTAT
314 ATT-GCATAAAAAG--TA--TAA
* ** ** * * *
12794 AGTCATACAAGCCTTCAAAAGTCTTATTACTCGTTTTAAATAGTTTTAGAGTCTCGTAATTTATT
1 AGTCATCCATTCCTTCAAAAGTCTTATTACTCACTTTAAATAGTTTTAGAATCTCATAATTCATT
* * * **
12859 TTAAGTT-AGATTTTTTT-TATTTTTAGTTAAAACAGATTATAATTGACTGTCTGCCTCAAAAAC
66 TTAAGTTGA-ATTTTTTTACATTTTTA-TTAAAACAGATTATAATTGAATGTCTGCTTGGAAAA-
* *
12922 TGTGAAGAAAAAGG-CATTCATTTGCAAG-AAAAGTTTAGTTATAGTCACCCA-TCCTCTCAAAA
128 TGTGAAG-AAAAGGCCATTCA-TTGCTAGAAAAAGTTTATTTATAGTCACCCATTCCT-TCAAAA
* * * *
12984 ACCTTATTAATCACTTTAAATGGTTTTGTAATTTGATCATTAATGTTAAGTTGAATTTTTTTACA
190 GCCTTATTAATCACTTTAAATGGTTTTGTAATTT-ATAATTGATTTTAAGTTGAATTTTTTTACA
* *
13049 TTTTTGGTTAAACAAATTATAATTGAATGAC-TACCTCGAGAAACGTGAAGAAAAAGT-C-ATT-
254 TTTTTGATTAAACAAATTATAATTGAATG-CTTACCTCGAGAAACATGAAGAAAAAGTACTATTG
**
13110 CATAGTCAAG-A-AA
318 CATA-AAAAGTATAA
* * * *
13123 AGTCATCCATTCCTTAAAAAGCCTTATTACTTACTTTAAATAGTTTTATAATCTCATAATTCATT
1 AGTCATCCATTCCTTCAAAAGTCTTATTACTCACTTTAAATAGTTTTAGAATCTCATAATTCATT
*
13188 TTAAGTTGAATTTTTTTACATTTTTCATTAAAACAGATCATAATTGAATGTCTGGCTTGGAAAAT
66 TTAAGTTGAATTTTTTTACATTTTT-ATTAAAACAGATTATAATTGAATGTCT-GCTTGGAAAAT
*
13253 GTGAAGAAAAGGCCA-TCATTGCTAGAAAAAGTTTATTTATTGTCACCCATTCCTTCAAAAGCCT
129 GTGAAGAAAAGGCCATTCATTGCTAGAAAAAGTTTATTTATAGTCACCCATTCCTTCAAAAGCCT
* * * * *
13317 TATTACTCACTTTTAATGGTGTTGTAATCTTATAATTGATTTTAAATTGAAATTTTTT-CTATTT
194 TATTAATCACTTTAAATGGTTTTGTAAT-TTATAATTGATTTTAAGTTGAATTTTTTTAC-ATTT
** * *
13381 TTCCTGAAAACATATTATAATTGAATG
257 TTGAT-TAAACAAATTATAATTGAATG
13408 TCTGCCTTGG
Statistics
Matches: 507, Mismatches: 83, Indels: 61
0.78 0.13 0.09
Matches are distributed among these distances:
328 7 0.01
329 162 0.32
330 65 0.13
331 8 0.02
332 1 0.00
334 3 0.01
335 3 0.01
336 3 0.01
337 1 0.00
340 40 0.08
341 96 0.19
342 46 0.09
343 71 0.14
344 1 0.00
ACGTcount: A:0.35, C:0.13, G:0.13, T:0.39
Consensus pattern (331 bp):
AGTCATCCATTCCTTCAAAAGTCTTATTACTCACTTTAAATAGTTTTAGAATCTCATAATTCATT
TTAAGTTGAATTTTTTTACATTTTTATTAAAACAGATTATAATTGAATGTCTGCTTGGAAAATGT
GAAGAAAAGGCCATTCATTGCTAGAAAAAGTTTATTTATAGTCACCCATTCCTTCAAAAGCCTTA
TTAATCACTTTAAATGGTTTTGTAATTTATAATTGATTTTAAGTTGAATTTTTTTACATTTTTGA
TTAAACAAATTATAATTGAATGCTTACCTCGAGAAACATGAAGAAAAAGTACTATTGCATAAAAA
GTATAA
Found at i:14097 original size:170 final size:171
Alignment explanation
Indices: 13859--14240 Score: 457
Period size: 170 Copynumber: 2.2 Consensus size: 171
13849 TGACAAGAAA
*
13859 AGTCACCCATTCCTTCAAAAGCCTTATTACGTC-CTTTAAATGGTTTTATAATCTCATAACTCAT
1 AGTCACCCATTCCTTCAAAAGCCTTATTAC-TCACTTTAAATGGTGTTATAATCTCATAACTCAT
* * * * * *
13923 TTTAAGTTGAATTTTTTTACATTTTTCATTACAACAGATCATAATTAAATGTCTAG-CTTGAGAA
65 TTTAAATTAAAATGTTTTACATTTTTCATGAAAACAGATCATAATTAAATGT-TAGCCTTGAGAA
* ** * * * *
13987 ATGTGAAGAAAAGGCCA-TCA-TTGCTAGGAAAAGTTTATTTAT
129 ACGTGAAGAAAAACCCATTCACTAG-TAAGAAAAGTTCACTTAT
* * * * * * *
14029 TGTTACCCATTCCTTCAAAAGCCTTATTACTCACTTTTAATGGTGTTGTAATCTTATAATTGATT
1 AGTCACCCATTCCTTCAAAAGCCTTATTACTCACTTTAAATGGTGTTATAATCTCATAACTCATT
* * * *
14094 TTAAATTAAAATGTTTTACATTTTTCATGAAAACAGATTATAATTGAATGTTTGCCTTGGGAAAC
66 TTAAATTAAAATGTTTTACATTTTTCATGAAAACAGATCATAATTAAATGTTAGCCTTGAGAAAC
*
14159 GTGAATAAAAACCCATTCACTAGTAAGAAAAGTTCACTTAT
131 GTGAAGAAAAACCCATTCACTAGTAAGAAAAGTTCACTTAT
* *
14200 AGTCACCAATTCCTTAAAAAGCCTTATTACTCACTTTAAAT
1 AGTCACCCATTCCTTCAAAAGCCTTATTACTCACTTTAAAT
14241 AGTTTTGTAN
Statistics
Matches: 177, Mismatches: 31, Indels: 7
0.82 0.14 0.03
Matches are distributed among these distances:
169 4 0.02
170 117 0.66
171 54 0.31
172 2 0.01
ACGTcount: A:0.34, C:0.16, G:0.12, T:0.38
Consensus pattern (171 bp):
AGTCACCCATTCCTTCAAAAGCCTTATTACTCACTTTAAATGGTGTTATAATCTCATAACTCATT
TTAAATTAAAATGTTTTACATTTTTCATGAAAACAGATCATAATTAAATGTTAGCCTTGAGAAAC
GTGAAGAAAAACCCATTCACTAGTAAGAAAAGTTCACTTAT
Found at i:16125 original size:341 final size:337
Alignment explanation
Indices: 15633--16946 Score: 1089
Period size: 341 Copynumber: 3.9 Consensus size: 337
15623 NNNNNNNNNN
* * * * **
15633 AATTGATTTTAAGTTGAAATTTTTTGCAT-TTTTCATGAAATCATATTATAATTGAATGT-TTAC
1 AATTGATTTTAAGTTG-AATTTTTT-TATATTTTGATTAAAACATATTATAATTGAATGTCTGGC
** * * * * * * **
15696 CTCGGGAAACATGAAGAAAAAGTTATTCACTGGCAAGAAAAGTTCATTGATTGTCACTAATTCCT
64 CTC-AAAAATATGAAGAAAAAGGTATTCATTGACAAGAAAAGTT-ATTTATAGTCACCCATTCCT
* *
15761 TCAAAAGCCTTATT-ATGCACTTTAAATGGTTTTGTAATCTCGTAATTGATTTTAAGTTGAACTG
127 TCAAAAGCCTTATTAAT-CACTTTAAATGGTTTTGTAATCTCGTAATTGATTTTAAGTTAAAATG
* * * ** ** *
15825 CTTTACATTTATGATTAAAATATATTATAATTGAGTGTTTGTCTTGGGAAATGTGAAGCAAAAGT
191 -TTTACATTTTTGATTAAAA-AGATTATAATTGAATGTTTAACTTGGGAAACATGAAGAAAAAGT
* * * * * * *
15890 AATCCATTAATATA-AAAAGTCCACTTATAGTCACGCAAGCCTTCGAAAGCCTTATTACTCGCTT
254 CATTCATTGATA-AGAAAAGTCCATTTATAGTCAC-CAATCCTTCAAAAGCCTTATTACTCACTT
*
15954 TAAACGGTTTTATAATCTCAT
317 TAAATGGTTTTATAATCTCAT
* * * *
15975 AATTGATTTTAAGTTGGATTTTTTTATACTTTTGGTTAAAACATATTATAATTGACTTTCT-GCC
1 AATTGATTTTAAGTTGAATTTTTTTATA-TTTTGATTAAAACATATTATAATTGAATGTCTGGCC
*
16039 TCAAAAATATGAAGAAAAAGGTATTCATTGACAAGAAAAGTATATTTATAGTCACCCATCCCATT
65 TCAAAAATATGAAGAAAAAGGTATTCATTGACAAGAAAAGT-TATTTATAGTCACCCATTCC-TT
* * * *
16104 -AGAAGCTTTATTAATCACTTTAAATGGTTTTGTAATCT-GATAACTGATTTTAAGTTAAATTGT
128 CAAAAGCCTTATTAATCACTTTAAATGGTTTTGTAATCTCG-TAATTGATTTTAAGTTAAAATGT
* * * * * * *
16167 TTCATATTTTTGGTTAAAAAGATTATAATTGAATGTCTACCTCGAGAAACATGAAGAAAAAATCA
192 TT-ACATTTTTGATTAAAAAGATTATAATTGAATGTTTAACTTGGGAAACATGAAGAAAAAGTCA
* * *
16232 TTCATTGATAAGAAAAGTCC-TTATATAGTCACTTATTCCTTCAAAAGCCTTATTGCTCACTTTA
256 TTCATTGATAAGAAAAGTCCATT-TATAGTCAC-CAATCCTTCAAAAGCCTTATTACTCACTTTA
16296 AATGG-TTTATAATCTCAT
319 AATGGTTTTATAATCTCAT
* * * * ** * *
16314 AATTCATTTTAAGTTAAATTTTTGTATATTTTTCATTAAAACATATCGTAATTGAATGTGTGGCT
1 AATTGATTTTAAGTTGAATTTTTTTATA-TTTTGATTAAAACATATTATAATTGAATGTCTGGCC
** * * * **
16379 TGGAAAATGTG-AGGAAAAGGCCA-TCATTGTTAAGAAAAGTTTATTTATAGTCACCCATTCCTT
65 TCAAAAATATGAAGAAAAAGG-TATTCATTGACAAGAAAAG-TTATTTATAGTCACCCATTCCTT
* * * * * *
16442 CAAAACCCTTATTACTCACTTTTAATGGTGTTGTAATCTCAG-AATTGATTTTAAATTAAAATTT
128 CAAAAGCCTTATTAATCACTTTAAATGGTTTTGTAATCTC-GTAATTGATTTTAAGTTAAAA-TG
* * * * * * *
16506 TTTGCATTTTTCATGAAAAACGGATTATAATTGATTGTTTAACTTGGAAAACATGAAGGAAAAGC
191 TTTACATTTTTGATTAAAAA--GATTATAATTGAATGTTTAACTTGGGAAACATGAAGAAAAAGT
*
16571 CATTCATTGATAAGAAAAGTTCATTTA-ATGTCACCAATTCCTTCAAAAGCCTTATTACAT-ACT
254 CATTCATTGATAAGAAAAGTCCATTTATA-GTCACCAA-TCCTTCAAAAGCCTTATTAC-TCACT
*
16634 TTAAATGGTTTTGTAATCTCAT
316 TTAAATGGTTTTATAATCTCAT
** * **
16656 AATTGATTTTAAGTTGAATTGCTTTATATTTCTGATTAAAATATATTATAATTGAATGT-TTACC
1 AATTGATTTTAAGTTGAATTTTTTTATATTT-TGATTAAAACATATTATAATTGAATGTCTGGCC
*** ** ** * * * * *** ****
16720 TTGGGAAACGTGAAGAAAAAGCAATCCATT-AGCATA-AAAAGTCCACTTATAGTTATAAAAGAT
65 -TCAAAAATATGAAGAAAAAGGTATTCATTGA-CA-AGAAAAGT-TATTTATAGTCACCCATTCC
* * * * * * * *
16783 TTCGAAAGCCTTATTACTCCCTTTAAATGGTTTTATAATCTCATAATTGATTTTAAGTTGAATTT
126 TTCAAAAGCCTTATTAATCACTTTAAATGGTTTTGTAATCTCGTAATTGATTTTAAGTTAAAATG
* * * * ** * *
16848 TTTAATATTTTTGATTAAAAAAGATTATAATTGATTATTTATCTTGAAAAACGTGAAGAAAAAGA
191 TTT-ACATTTTTGATT-AAAAAGATTATAATTGAATGTTTAACTTGGGAAACATGAAGAAAAAGT
*
16913 CATTCATTGGA-AAAAAAAGTCCATTTATAGTCAC
254 CATTCATT-GATAAGAAAAGTCCATTTATAGTCAC
16947 ACATCCCCTT
Statistics
Matches: 783, Mismatches: 153, Indels: 72
0.78 0.15 0.07
Matches are distributed among these distances:
338 2 0.00
339 165 0.21
340 112 0.14
341 217 0.28
342 190 0.24
343 91 0.12
344 6 0.01
ACGTcount: A:0.36, C:0.12, G:0.13, T:0.39
Consensus pattern (337 bp):
AATTGATTTTAAGTTGAATTTTTTTATATTTTGATTAAAACATATTATAATTGAATGTCTGGCCT
CAAAAATATGAAGAAAAAGGTATTCATTGACAAGAAAAGTTATTTATAGTCACCCATTCCTTCAA
AAGCCTTATTAATCACTTTAAATGGTTTTGTAATCTCGTAATTGATTTTAAGTTAAAATGTTTAC
ATTTTTGATTAAAAAGATTATAATTGAATGTTTAACTTGGGAAACATGAAGAAAAAGTCATTCAT
TGATAAGAAAAGTCCATTTATAGTCACCAATCCTTCAAAAGCCTTATTACTCACTTTAAATGGTT
TTATAATCTCAT
Found at i:16965 original size:171 final size:169
Alignment explanation
Indices: 15490--16975 Score: 1095
Period size: 171 Copynumber: 8.7 Consensus size: 169
15480 ATGTTTTTGC
* * * * * * ** * * *
15490 ATTTTTCATTAAAACATATTATAATTCAATATCTATCTTGGAAAATGTGAAGTAAAGGATA-TCA
1 ATTTTTGATTAAAAAATATTATAATTGAATGTTTACCTTGGAAAACATGAAGAAAAAGACATTCA
** * * ** *
15554 TTGCCTAGAAAAGTTCATTTATAGTCACCCATTTGTTCAAAAGCCTTATTACTTACTTTAAATGG
66 TTG-AAAGAAAAGTCCATTTATAGTCACACATTCCTTCAAAAGCCTTATTACTCACTTTAAATGG
* ********** **
15619 TGTTNNNNNNNNNNAATTGATTTTAAGTTGAAATTTTTTGC
130 TTTTGTAATCTCATAATTGATTTTAAGTTG-AATTTTTTAT
* * ** * * **
15660 ATTTTTCATGAAATCATATTATAATTGAATGTTTACCTCGGGAAACATGAAGAAAAAGTTATTCA
1 ATTTTTGATTAAAAAATATTATAATTGAATGTTTACCTTGGAAAACATGAAGAAAAAGACATTCA
* * * * *
15725 CTGGCAAGAAAAGTTCATTGATTGTCACTA-ATTCCTTCAAAAGCCTTATTA-TGCACTTTAAAT
66 -TTGAAAGAAAAGTCCATTTATAGTCAC-ACATTCCTTCAAAAGCCTTATTACT-CACTTTAAAT
* ** *
15788 GGTTTTGTAATCTCGTAATTGATTTTAAGTTGAACTGCTTTAC
128 GGTTTTGTAATCTCATAATTGATTTTAAGTTGAA-TTTTTTAT
* * * ** * ** * *
15831 ATTTATGATTAAAATATATTATAATTGAGTGTTTGTCTTGGGAAATGTGAAGCAAAAGTA-ATCC
1 ATTTTTGATTAAAAAATATTATAATTGAATGTTTACCTTGGAAAACATGAAGAAAAAG-ACATTC
* * * ** * * *
15895 ATT-AATATAAAAAGTCCACTTATAGTCACGCAAGCCTTCGAAAGCCTTATTACTCGCTTTAAAC
65 ATTGAA-A-GAAAAGTCCATTTATAGTCACACATTCCTTCAAAAGCCTTATTACTCACTTTAAAT
* *
15959 GGTTTTATAATCTCATAATTGATTTTAAGTTGGATTTTTTTAT
128 GGTTTTGTAATCTCATAATTGATTTTAAGTT-GAATTTTTTAT
* * * * * ** * **
16002 ACTTTTGGTTAAAACATATTATAATTGACT-TTCTGCC-TCAAAAATATGAAGAAAAAGGTATTC
1 ATTTTTGATTAAAAAATATTATAATTGAATGTT-TACCTTGGAAAACATGAAGAAAAAGACATTC
** * * * * *
16065 ATTGACAAGAAAAGTATATTTATAGTCACCCATCCCATT-AGAAGCTTTATTAATCACTTTAAAT
65 ATTGA-AAGAAAAGTCCATTTATAGTCACACATTCC-TTCAAAAGCCTTATTACTCACTTTAAAT
* * * *
16129 GGTTTTGTAATCTGATAACTGATTTTAAGTTAAATTGTTTCAT
128 GGTTTTGTAATCTCATAATTGATTTTAAGTTGAATT-TTTTAT
* * * *
16172 ATTTTTGGTT-AAAAAGATTATAATTGAATGTCTACC-TCGAGAAACATGAAGAAAAA-ATCATT
1 ATTTTTGATTAAAAAATATTATAATTGAATGTTTACCTTGGA-AAACATGAAGAAAAAGA-CATT
** *
16234 CATTGATAAGAAAAGTCC-TTATATAGTCACTTATTCCTTCAAAAGCCTTATTGCTCACTTTAAA
64 CATTGA-AAGAAAAGTCCATT-TATAGTCACACATTCCTTCAAAAGCCTTATTACTCACTTTAAA
* * *
16298 TGG-TTTATAATCTCATAATTCATTTTAAGTTAAATTTTTGTAT
127 TGGTTTTGTAATCTCATAATTGATTTTAAGTTGAATTTTT-TAT
* * ** * ** ** * * *
16341 ATTTTTCATTAAAACATATCGTAATTGAATGTGTGGCTTGGAAAATGTGAGGAAAAGGCCA-TCA
1 ATTTTTGATTAAAAAATATTATAATTGAATGTTTACCTTGGAAAACATGAAGAAAAAGACATTCA
* ** * * *
16405 TTGTTAAGAAAAGTTTATTTATAGTCACCCATTCCTTCAAAACCCTTATTACTCACTTTTAATGG
66 TTG-AAAGAAAAGTCCATTTATAGTCACACATTCCTTCAAAAGCCTTATTACTCACTTTAAATGG
* * * * **
16470 TGTTGTAATCTCAGAATTGATTTTAAATTAAAATTTTTTGC
130 TTTTGTAATCTCATAATTGATTTTAAGTT-GAATTTTTTAT
* * ** * * * *
16511 ATTTTTCATGAAAAACGGATTATAATTGATTGTTTAACTTGGAAAACATGAAGGAAAAGCCATTC
1 ATTTTTGATTAAAAA-ATATTATAATTGAATGTTTACCTTGGAAAACATGAAGAAAAAGACATTC
*
16576 ATTGATAAGAAAAGTTCATTTA-ATGTCAC-CAATTCCTTCAAAAGCCTTATTACAT-ACTTTAA
65 ATTGA-AAGAAAAGTCCATTTATA-GTCACAC-ATTCCTTCAAAAGCCTTATTAC-TCACTTTAA
*
16638 ATGGTTTTGTAATCTCATAATTGATTTTAAGTTGAATTGCTTTAT
126 ATGGTTTTGTAATCTCATAATTGATTTTAAGTTGAATT-TTTTAT
* * * * *
16683 ATTTCTGATTAAAATATATTATAATTGAATGTTTACCTTGGGAAACGTGAAGAAAAAG-CAATCC
1 ATTTTTGATTAAAAAATATTATAATTGAATGTTTACCTTGGAAAACATGAAGAAAAAGAC-ATTC
* * * * * **** * *
16747 ATTAGCATA-AAAAGTCCACTTATAGTTATAAAAGATTTCGAAAGCCTTATTACTCCCTTTAAAT
65 ATT-G-AAAGAAAAGTCCATTTATAGTCACACATTCCTTCAAAAGCCTTATTACTCACTTTAAAT
*
16811 GGTTTTATAATCTCATAATTGATTTTAAGTTGAATTTTTTAAT
128 GGTTTTGTAATCTCATAATTGATTTTAAGTTGAATTTTTT-AT
* * * * * *
16854 ATTTTTGATTAAAAAAGATTATAATTGATTATTTATCTTGAAAAACGTGAAGAAAAAGACATTCA
1 ATTTTTGATTAAAAAATATTATAATTGAATGTTTACCTTGGAAAACATGAAGAAAAAGACATTCA
* * * *
16919 TTGGAAAAAAAAGTCCATTTATAGTCACACATCCCCTT-AGAAGCCTTATTAATCACT
66 TT-GAAAGAAAAGTCCATTTATAGTCACACAT-TCCTTCAAAAGCCTTATTACTCACT
16976 NNNNNNNNNN
Statistics
Matches: 1039, Mismatches: 230, Indels: 93
0.76 0.17 0.07
Matches are distributed among these distances:
168 3 0.00
169 125 0.12
170 305 0.29
171 495 0.48
172 109 0.10
173 2 0.00
ACGTcount: A:0.35, C:0.13, G:0.13, T:0.38
Consensus pattern (169 bp):
ATTTTTGATTAAAAAATATTATAATTGAATGTTTACCTTGGAAAACATGAAGAAAAAGACATTCA
TTGAAAGAAAAGTCCATTTATAGTCACACATTCCTTCAAAAGCCTTATTACTCACTTTAAATGGT
TTTGTAATCTCATAATTGATTTTAAGTTGAATTTTTTAT
Found at i:17960 original size:24 final size:23
Alignment explanation
Indices: 17911--17960 Score: 55
Period size: 24 Copynumber: 2.1 Consensus size: 23
17901 AAATTTCCAA
* *
17911 GCTTTCACCAAGCTTTTACAATG
1 GCTTTCAACAAGCTTTTACAAAG
* *
17934 GCTTTCAACAATGGTTTTTCAAAG
1 GCTTTCAACAA-GCTTTTACAAAG
17958 GCT
1 GCT
17961 CAACCACAAC
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
23 10 0.45
24 12 0.55
ACGTcount: A:0.26, C:0.22, G:0.16, T:0.36
Consensus pattern (23 bp):
GCTTTCAACAAGCTTTTACAAAG
Found at i:20486 original size:171 final size:169
Alignment explanation
Indices: 20173--20934 Score: 615
Period size: 171 Copynumber: 4.5 Consensus size: 169
20163 NNATGGATTA
* * * * * * * * * * *
20173 CTTTTGCTTCATGTTTCCTAAGGCAAACATACAATTATAATATATTTTAATTAGAAATGTAAAGC
1 CTTTTTCTTCACGTTTCCTTAGGCAGACATTCAATTATAATCTGTTTTAATGAAAAATATAAA-A
* * * * *
20238 AGTTCAACTTAAAATCAATTATGAGATTACAAAACTATTTAAAGTGAGTAATAATGG-TTTTTAA
65 AATTTAACTTAAAATCAATTATGAGATTACAAAACCATTTAAAGTGAGTAATAA-GGCTTCTGAA
*
20302 GGAATTGGTGACTATAAATGAACTTTTCTTACTAGTGAATGG
129 GGAA-TGGTGACTATAAATGAACTTTTCTTACTAATGAATGG
* * *
20344 CTTTTTATTCACGTTTCCTTAGGCAGACA-TCAATTTTAATCTGTTTTTCATGAAAAATATAAAA
1 CTTTTTCTTCACGTTTCCTTAGGCAGACATTCAATTATAATCTG-TTTTAATGAAAAATATAAAA
* * *
20408 AATTTTAATTTAAAATCAATTATGAGATTA-AAACACCATTAAAAGTAAGTAATAAGGCTTCTGA
65 AA-TTTAACTTAAAATCAATTATGAGATTACAAA-ACCATTTAAAGTGAGTAATAAGGCTTCTGA
20472 AGGAATGAGTGACTATAAATGAACTTTTCTTAAC-AATG-ATGG
128 AGGAATG-GTGACTATAAATGAACTTTTCTT-ACTAATGAATGG
** * * * * *
20514 CTTTTTCTTCAAATTTTCC--AAGCTAGACATTTAAGTACT-ATATGTTTTAATGAAAAATGTAA
1 CTTTTTCTTC-ACGTTTCCTTAGGC-AGACATTCAATTA-TAATCTGTTTTAATGAAAAATATAA
* * * * * *
20576 AACAATTCAACTTAAAATGAATTATGAAATTA-TAAACCATTTAAAGTGAGCAATAAGGCTTTTG
63 AA-AATTTAACTTAAAATCAATTATGAGATTACAAAACCATTTAAAGTGAGTAATAAGGCTTCTG
* * * * *
20640 AAGAAATAGGTAACTATATAT-AGACTTTTTTTAATCAATGAATGG
127 AAGGAAT-GGTGACTATAAATGA-ACTTTTCTTACT-AATGAATGG
* * **
20685 CTTTTTCTTCACGTTT-CTTGAGGTATACATTCAATTATAATCTG-TTTAACCAAAAATATAAAA
1 CTTTTTCTTCACGTTTCCTT-AGGCAGACATTCAATTATAATCTGTTTTAATGAAAAATAT-AAA
** * *
20748 AAATTTAACTTAAAATCAGCTATCAGATTACAAAACCATTTAAAGTGATTAATAA-GCTTCT-AA
64 AAATTTAACTTAAAATCAATTATGAGATTACAAAACCATTTAAAGTGAGTAATAAGGCTTCTGAA
* * * * *
20811 GAGGATGGATGACTATAAATGCACTTTTCTT-GTCGATGAAT-A
129 G-GAATGG-TGACTATAAATGAACTTTTCTTACT-AATGAATGG
** * * * ** *
20853 CATTTTTCTTCATATTT--TTGAGGCAGACAGTCAATTATAATATATTTTAACCAAAAGTATAAA
1 C-TTTTTCTTCACGTTTCCTT-AGGCAGACATTCAATTATAATCTGTTTTAATGAAAAATATAAA
**
20916 AATATCCAACTTAAAATCA
64 AA-ATTTAACTTAAAATCA
20935 NNNNNNNNNN
Statistics
Matches: 476, Mismatches: 87, Indels: 58
0.77 0.14 0.09
Matches are distributed among these distances:
168 30 0.06
169 107 0.22
170 148 0.31
171 186 0.39
172 5 0.01
ACGTcount: A:0.39, C:0.12, G:0.12, T:0.36
Consensus pattern (169 bp):
CTTTTTCTTCACGTTTCCTTAGGCAGACATTCAATTATAATCTGTTTTAATGAAAAATATAAAAA
ATTTAACTTAAAATCAATTATGAGATTACAAAACCATTTAAAGTGAGTAATAAGGCTTCTGAAGG
AATGGTGACTATAAATGAACTTTTCTTACTAATGAATGG
Found at i:20760 original size:170 final size:170
Alignment explanation
Indices: 20243--20934 Score: 631
Period size: 170 Copynumber: 4.1 Consensus size: 170
20233 AAAGCAGTTC
* *
20243 AACTTAAAATCAATTATGAGATTACAAAACTATTTAAAGTGAGTAATAATGG-TTTTTAAGGAAT
1 AACTTAAAATCAATTATGAGATTACAAAACCATTTAAAGTGAGTAATAA-GGCTTTTGAAGGAA-
* * * *
20307 TGGTGACTATAAATGAACTTTTCTTACT-AGTGAATGGCTTTTTATTCACGTTTCCTTAGGCAGA
64 TGGTGACTATAAATGAACTTTTCTTAATCAATGAATGGCTTTTTCTTCACGTTT-CTTAGGTAGA
* * *
20371 CA-TCAATTTTAATCTGTTTTTCATGAAAAATATAAAAAATTTT
128 CATTCAATTATAATCTG-TTTTAATGAAAAATATAAAAAAATTT
* * * *
20414 AATTTAAAATCAATTATGAGATTA-AAACACCATTAAAAGTAAGTAATAAGGCTTCTGAAGGAAT
1 AACTTAAAATCAATTATGAGATTACAAA-ACCATTTAAAGTGAGTAATAAGGCTTTTGAAGGAAT
** ** *
20478 GAGTGACTATAAATGAACTTTTCTTAA-CAATG-ATGGCTTTTTCTTCAAATTTTCCAAGCTAGA
65 G-GTGACTATAAATGAACTTTTCTTAATCAATGAATGGCTTTTTCTTC-ACGTTTCTTAGGTAGA
* * * * * *
20541 CATTTAAGTACT-ATATGTTTTAATGAAAAATGTAAAACAATTC
128 CATTCAATTA-TAATCTGTTTTAATGAAAAATATAAAAAAATTT
* * * * *
20584 AACTTAAAATGAATTATGAAATTA-TAAACCATTTAAAGTGAGCAATAAGGCTTTTGAAGAAATA
1 AACTTAAAATCAATTATGAGATTACAAAACCATTTAAAGTGAGTAATAAGGCTTTTGAAGGAAT-
* * * *
20648 GGTAACTATATAT-AGACTTTTTTTAATCAATGAATGGCTTTTTCTTCACGTTTCTTGAGGTATA
65 GGTGACTATAAATGA-ACTTTTCTTAATCAATGAATGGCTTTTTCTTCACGTTTCTT-AGGTAGA
**
20712 CATTCAATTATAATCTG-TTTAACCAAAAATATAAAAAAATTT
128 CATTCAATTATAATCTGTTTTAATGAAAAATATAAAAAAATTT
** * * * *
20754 AACTTAAAATCAGCTATCAGATTACAAAACCATTTAAAGTGATTAATAA-GCTTCT-AAGAGGAT
1 AACTTAAAATCAATTATGAGATTACAAAACCATTTAAAGTGAGTAATAAGGCTTTTGAAG-GAAT
* * * * ** *
20817 GGATGACTATAAATGCACTTTTCTT-GTCGATGAAT-ACATTTTTCTTCATATTT-TTGAGGCAG
65 GG-TGACTATAAATGAACTTTTCTTAATCAATGAATGGC-TTTTTCTTCACGTTTCTT-AGGTAG
* * * ** * * **
20879 ACAGTCAATTATAATATATTTTAACCAAAAGTATAAAAATATCC
127 ACATTCAATTATAATCTGTTTTAATGAAAAATATAAAAAAATTT
20923 AACTTAAAATCA
1 AACTTAAAATCA
20935 NNNNNNNNNN
Statistics
Matches: 423, Mismatches: 79, Indels: 40
0.78 0.15 0.07
Matches are distributed among these distances:
168 24 0.06
169 110 0.26
170 147 0.35
171 141 0.33
172 1 0.00
ACGTcount: A:0.40, C:0.12, G:0.12, T:0.36
Consensus pattern (170 bp):
AACTTAAAATCAATTATGAGATTACAAAACCATTTAAAGTGAGTAATAAGGCTTTTGAAGGAATG
GTGACTATAAATGAACTTTTCTTAATCAATGAATGGCTTTTTCTTCACGTTTCTTAGGTAGACAT
TCAATTATAATCTGTTTTAATGAAAAATATAAAAAAATTT
Found at i:21463 original size:171 final size:171
Alignment explanation
Indices: 21166--21695 Score: 634
Period size: 171 Copynumber: 3.1 Consensus size: 171
21156 NNNNNNNNNN
* * * **
21166 TTTTGCTTCACGTTTCCCAAGATAAACACTCAATTATAATATATTTTAATCAAAAATGTAAAGCA
1 TTTTTCTTCACGTTTCCCAAGATAAACATTCAATTATAATATATTTTAATGAAAAATGTAAAAAA
* * *
21231 GTTCAACTTAAAATTAATTAAGAGATTACAAAACCATTTAAAGTGAGTAATAAGGCTTTTGAAGG
66 TTTCAACTTAAAATCAATTATGAGATTACAAAACCATTTAAAGTGAGTAATAAGGCTTTTGAAGG
* * *
21296 AATTAGTGACAATAAATGAACTTTTCTTGCCAGTGAATGGC
131 AATTGGTGACTATAAATGAACTTTTCTTGCCAATGAATGGC
* * * **
21337 TTTTTCTTCACGTTTCCCAAGGTAAACATTCAATTATAATCTATTTTCATGAAAAATACAAAAAA
1 TTTTTCTTCACGTTTCCCAAGATAAACATTCAATTATAATATATTTTAATGAAAAATGTAAAAAA
* * * * *
21402 TTTCAACTTGAAATCATTTATGAGATTACAACACCATTTAAAGTGAGTAATAAGACTTTTGAATG
66 TTTCAACTTAAAATCAATTATGAGATTACAAAACCATTTAAAGTGAGTAATAAGGCTTTTGAAGG
* *
21467 AA-TGGTTGACTATAAATTAACTTTTCTTGGCAATG-ATGG-
131 AATTGG-TGACTATAAATGAACTTTTCTTGCCAATGAATGGC
* * * * * * * * *
21506 TCTTTACTTCACATTTTCCGAGACAGATATTGAATTATAATATATTTTAATGAAACATGTAAAAA
1 T-TTTTCTTCACGTTTCCCAAGATAAACATTCAATTATAATATATTTTAATGAAAAATGTAAAAA
* * * * * * *
21571 ATTTCAACTTAAAATGAATTATGAAATTATAAAACGATTTAAAGTGGGCAATAAGGCTTTCGAAG
65 ATTTCAACTTAAAATCAATTATGAGATTACAAAACCATTTAAAGTGAGTAATAAGGCTTTTGAAG
* * * *
21636 CAATGGGTGACTATAAATGGACTTTTCTTTCCAATGAATGGC
130 GAATTGGTGACTATAAATGAACTTTTCTTGCCAATGAATGGC
21678 TTTTTCTTCACGTTTCCC
1 TTTTTCTTCACGTTTCCC
21696 CAAGCATGCA
Statistics
Matches: 296, Mismatches: 58, Indels: 10
0.81 0.16 0.03
Matches are distributed among these distances:
169 1 0.00
170 135 0.46
171 159 0.54
172 1 0.00
ACGTcount: A:0.37, C:0.14, G:0.14, T:0.35
Consensus pattern (171 bp):
TTTTTCTTCACGTTTCCCAAGATAAACATTCAATTATAATATATTTTAATGAAAAATGTAAAAAA
TTTCAACTTAAAATCAATTATGAGATTACAAAACCATTTAAAGTGAGTAATAAGGCTTTTGAAGG
AATTGGTGACTATAAATGAACTTTTCTTGCCAATGAATGGC
Found at i:22527 original size:170 final size:169
Alignment explanation
Indices: 22036--23002 Score: 602
Period size: 171 Copynumber: 5.7 Consensus size: 169
22026 AAGTGAATAA
* * ** * ** **
22036 AAATGGGCTTTTCTTGACAATGAATGGTTTTTTCGTCACGTTTCTCAAGGTAGTCATTCAATTGC
1 AAATGGACTTTTCTTGCCAATGAATGACTTTTTCTTCACGTTTCTCAAGGTAAACATTCAATTAT
* ** * ** * * * *
22101 ATTCCGTTTTAATAAAAAATATAAAAAAATTTAACTTAAAATCAATTATGAGATTGCAAAACTAT
66 AAT-ATTTTTCACCAAAAATGT-AAAAAATTCAACTTAAAATCAATTATGAGATTACAAAACCAT
* * ** ** *
22166 TTAAAGC-ACGTAATAAGGCTTTCAAAGCTATGAGTGACTAT
129 TGAAAGCGA-GTAAAAAGGCTTTTGAAGGAATGGGTGACTAT
*** * * * * * * *
22207 AAATGGA-TATTTCTTATTAATGAATAACTTTTTTTTTACATTTCCCAAGGTAGACATTTAATTA
1 AAATGGACT-TTTCTTGCCAATGAATGACTTTTTCTTCACGTTTCTCAAGGTAAACATTCAATTA
* * ** ** * * * * *
22271 GAATCAGTTTGAATAAAAAATATTAAAAAATTTAACTTAAAATCAATTATGAGAATATAAATCCA
65 TAAT-ATTTTTCACCAAAAAT-GTAAAAAATTCAACTTAAAATCAATTATGAGATTACAAAACCA
* ** * * *
22336 TTTAAAGCGAACAATAAGGCTTTTGAAAGAATGGGTAACTAT
128 TTGAAAGCGAGTAAAAAGGCTTTTGAAGGAATGGGTGACTAT
** * * *
22378 AAATGGACTTTTCTTGCCAATGAATGGTTTTTTCTTCATGTTTC-CTAAGGGAAACATTCAATTT
1 AAATGGACTTTTCTTGCCAATGAATGACTTTTTCTTCACGTTTCTC-AAGGTAAACATTCAATTA
* *
22442 TAAT-TTGTTTAACCAAAAATGTAGAAAAATTCAACTTAAAATCAATTATCAGATTACAAAACCA
65 TAATATT-TTTCACCAAAAATGTA-AAAAATTCAACTTAAAATCAATTATGAGATTACAAAACCA
* * * *
22506 TTGAAAGTGATTAAAAAGGCTTCT-AAGGGGATGGGTGACTAT
128 TTGAAAGCGAGTAAAAAGGCTTTTGAA-GGAATGGGTGACTAT
* ** * * * * * *
22548 AAATGGACTTTTTTTTTCAATGGATGCCTTTTTCTTCACGTTTATCGAGGTAAATAATCAATTAT
1 AAATGGACTTTTCTTGCCAATGAATGACTTTTTCTTCACGTTTCTCAAGGTAAACATTCAATTAT
********** * * *
22613 AAACTATTTNNNNNNNNNNTAT-AAAAAAATAT-AACTTAAAATTAATTATGAGATTATAAAACC
66 -AA-TATTT-TTCACCAAAAATGTAAAAAAT-TCAACTTAAAATCAATTATGAGATTACAAAACC
* * ** ** *
22676 ATTGCAAGCGAGTAATAAA-GCTTTCGAAGGCTTGCATGACTAG
127 ATTGAAAGCGAGTAA-AAAGGCTTTTGAAGGAATGGGTGACTAT
* * * * * * * *
22719 AAGTGGACTTTT-TATGCTAATGGATTACTTTTGCTTCATGTTTCCCAAGGCAAACATTCAATTA
1 AAATGGACTTTTCT-TGCCAATGAATGACTTTTTCTTCACGTTTCTCAAGGTAAACATTCAATTA
* * * *
22783 TAATATATTTTCAGCAGAAATGTAAAGCAATTCAACTTAAAATCAATTATGAGATTACAAAACTA
65 TAATAT-TTTTCACCAAAAATGTAAA-AAATTCAACTTAAAATCAATTATGAGATTACAAAACCA
* * ** * *
22848 TTTAAAGTGAGTAATTAGGCTTTTTAAGGAATTGGTGACTAT
128 TTGAAAGCGAGTAAAAAGGCTTTTGAAGGAATGGGTGACTAT
* ** * * *
22890 AAATGAACTTTTCTTGATAGTGAATTACTTTTTCTTCACGTTTCTCGAGGTAAACATTCAATTAT
1 AAATGGACTTTTCTTGCCAATGAATGACTTTTTCTTCACGTTTCTCAAGGTAAACATTCAATTAT
* * * *
22955 AATCTACTTTCACGAAAAATGCAAAAAATTTCAACTTAAAATCAATTA
66 AATAT-TTTTCACCAAAAATGTAAAAAA-TTCAACTTAAAATCAATTA
23003 NNNNNNNNNN
Statistics
Matches: 608, Mismatches: 164, Indels: 48
0.74 0.20 0.06
Matches are distributed among these distances:
169 10 0.02
170 139 0.23
171 442 0.73
172 13 0.02
173 4 0.01
ACGTcount: A:0.38, C:0.12, G:0.13, T:0.35
Consensus pattern (169 bp):
AAATGGACTTTTCTTGCCAATGAATGACTTTTTCTTCACGTTTCTCAAGGTAAACATTCAATTAT
AATATTTTTCACCAAAAATGTAAAAAATTCAACTTAAAATCAATTATGAGATTACAAAACCATTG
AAAGCGAGTAAAAAGGCTTTTGAAGGAATGGGTGACTAT
Found at i:25290 original size:168 final size:170
Alignment explanation
Indices: 24735--25456 Score: 482
Period size: 171 Copynumber: 4.3 Consensus size: 170
24725 AAAAATATAA
* * **
24735 AAAAATTCAACTTAAAATCAATTATGAGATTACGAAACCATTTAAAGCGTA-TAATAATACTTTC
1 AAAAATTCAACTTAAAATCAATTATGAGATTGCAAAACCATTTAAAGCG-AGTAATAAGGCTTTC
* ** * * * * * *
24799 AAAAGCTTGAGTGTCTATAAATGGACATTTTT-TGTCAATGAATAACTTTTTCTTTACATTTC-C
65 AAAGGAATGAGTGACTATAAATGGAC-TTTTTCTGCCAATGAATGAGTTTTTCTTCACGTTTCTC
* ** * * * **
24862 TAAGGTAGACATTCAATTAGAATCTGTTTTAACCAAAAATA-TT
129 -GAGAAAAACAATCAATTATAATCTACTTTAACCAAAAA-AGTT
********* * ** * * * *
24905 NNNNNNNNNNACTTAAAATCAATTATGAGAATATAAATCCATTTAAAGCGAGAAATAAGACTTTT
1 -AAAAATTCAACTTAAAATCAATTATGAGATTGCAAAACCATTTAAAGCGAGTAATAAGGCTTTC
* * * ** *
24970 AAAAGAAT-AGGTCACTATAAATGGAC-TTTTCTTGCCAAGGAATG-GTTTTTTCTTCATATTTT
65 AAAGGAATGA-GTGACTATAAATGGACTTTTTC-TGCCAATGAATGAG-TTTTTCTTCACGTTTC
* ** * * * ********
25032 TCAAGGCACACATTCAATTATAATCT-GTTTAACCANNNNNNNNN
127 TCGAGAAAAACAATCAATTATAATCTACTTTAACCA-AAAAAGTT
* * * * * *
25076 NAAAATTCAACTTAAAATCAATTATCAAATTGCAAAACCGTTTAAAGTGATTAATAAGGC-TTCT
1 AAAAATTCAACTTAAAATCAATTATGAGATTGCAAAACCATTTAAAGCGAGTAATAAGGCTTTC-
* * *** * * *
25140 AAAGTAATGGGTGACTATAAATGGACTTTTT-TTTTAATGAAT-A-TTTTTTTTTACGTTTTTCG
65 AAAGGAATGAGTGACTATAAATGGACTTTTTCTGCCAATGAATGAGTTTTTCTTCACGTTTCTCG
* * *
25202 AGATAAATAATCAATTATAATCTACTTTAA-C-GAAAAGTAT
130 AGAAAAACAATCAATTATAATCTACTTTAACCAAAAAAGT-T
*
25242 AAAAAAATTCAACTTAAAATCAATTATGAGATTGTAAAACCATTTAAAGCGAGTAATAAGGCTTT
1 --AAAAATTCAACTTAAAATCAATTATGAGATTGCAAAACCATTTAAAGCGAGTAATAAGGCTTT
*
25307 CGAAGGAATGAGTGACTATAAATGGACTTTTTCTGCCAATGAATGAGTTTTTCTTCACGTTTCTC
64 CAAAGGAATGAGTGACTATAAATGGACTTTTTCTGCCAATGAATGAGTTTTTCTTCACGTTTCTC
* **
25372 GAGAAAAACATTCAATTATAATCTGTTTTAACCAAAAAAGTT
129 GAGAAAAACAATCAATTATAATCTACTTTAACCAAAAAAGTT
* * * *
25414 AAAAATTGAACTGAAAATCAATTATGAGATTACAAAACTATTT
1 AAAAATTCAACTTAAAATCAATTATGAGATTGCAAAACCATTT
25457 TACTGCATGT
Statistics
Matches: 417, Mismatches: 112, Indels: 45
0.73 0.20 0.08
Matches are distributed among these distances:
167 33 0.08
168 86 0.21
169 24 0.06
170 111 0.27
171 154 0.37
172 3 0.01
173 6 0.01
ACGTcount: A:0.39, C:0.12, G:0.12, T:0.34
Consensus pattern (170 bp):
AAAAATTCAACTTAAAATCAATTATGAGATTGCAAAACCATTTAAAGCGAGTAATAAGGCTTTCA
AAGGAATGAGTGACTATAAATGGACTTTTTCTGCCAATGAATGAGTTTTTCTTCACGTTTCTCGA
GAAAAACAATCAATTATAATCTACTTTAACCAAAAAAGTT
Found at i:25750 original size:171 final size:167
Alignment explanation
Indices: 25541--26386 Score: 602
Period size: 171 Copynumber: 5.0 Consensus size: 167
25531 TGATTATAAG
* * * *
25541 ACCATTTAAAGGGAGTAATAAAGCTTTCAAAGGCTTGAGTGAATAAAAATCGG-CTTTTCCTGAT
1 ACCATTTAAAGCGAATAATAAA-CTTTCAAAGGCTTGAGTGACTATAAAT-GGACTTTT-CTG-T
* * **
25605 AATGAATGGTTTTTTCTTCACGTTTCTCAAGGCA-ATCATTCAATTACATTCTGTTTTAATAAAA
62 AATGAATGGTTTTTTCTTCACATTTCTCAAGGCAGA-CATTCAATTACAATCTGTTTTAACCAAA
*
25669 AATATAAAAAAATTCAACTTAAAATTAATTATAAGATTGAGAA
126 AATATAAAAAAATTCAACTTAAAATCAATTATAAGATTGA-AA
* * *
25712 ACCATTTAAAGCGCATAATAATACTTTCAAAAGCTTGAGTGACTATAAATGGACATTTTTTGTCA
1 ACCATTTAAAGCGAATAATAA-ACTTTCAAAGGCTTGAGTGACTATAAATGGAC-TTTTCTGT-A
* *** * * * * *
25777 GTGAATAACTTTTTCTTTACATTTCCCAAGGTAGACATTCAAGTAGAATCTGTTTTAACCAAAAA
63 ATGAATGGTTTTTTCTTCACATTTCTCAAGGCAGACATTCAATTACAATCTGTTTTAACCAAAAA
* *
25842 TATTAAAAAATTCAACTTAAAATCAATTATGAGAATAT-AAA
128 TATAAAAAAATTCAACTTAAAATCAATTATAAG-AT-TGAAA
* * * * * ** * * * *
25883 TCCATTTCAAGCAAAAAATAAGACTTTTAAAGGAATGGGTCACTATGAATGGACTTTTCTGGCCA
1 ACCATTTAAAGCGAATAATAA-ACTTTCAAAGGCTTGAGTGACTATAAATGGACTTTTCT-G-TA
* * * * *
25948 ACGAATGGTTTTTTTTTCACATTTTTCAAGGCAGACATTTAATTATAATCTG-TTTAACCAAAAA
63 ATGAATGGTTTTTTCTTCACATTTCTCAAGGCAGACATTCAATTACAATCTGTTTTAACCAAAAA
* * *
26012 TGTGAAAAAATTCAACTTAAAATCAATTATTAGATTGCAAA
128 TATAAAAAAATTCAACTTAAAATCAATTATAAGATTG-AAA
* * * * * * * *
26053 ACCGTTTAAAGTGATTAATAAGGC-TTCTAAGG-TGATGGGTGAGTATAAATGGACTTTTCTTTT
1 ACCATTTAAAGCGAATAATAA-ACTTTCAAAGGCT--TGAGTGACTATAAATGGACTTTTC--TG
** * * ** ** * * * * **
26116 TAATGAATACCTTTTTTC-T-ACGTTTTTTGAGATAAATAATCAATTATAATCTACTTTAA-CAA
61 TAATGAAT-GGTTTTTTCTTCACATTTCTCAAGGCAGACATTCAATTACAATCTGTTTTAACCAA
* *
26178 AAACTATAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAA
125 AAA-TATAAAAAAATTCAACTTAAAATCAATTATAAGATT-GAAA
* * ** * * *
26223 ACCATTTAAAGCGAGA-AATAAGGCTTTCGAAGGAATGGGTGACTATAAATTGACTTTTTCTATC
1 ACCATTTAAAGCGA-ATAATAA-ACTTTCAAAGGCTTGAGTGACTATAAATGGAC-TTTTCTGT-
* ** * * * * *
26287 AATTAATGACTTTTTCTTCACGTTTCCCGAGG-AAAGCATTCAATTATAATCTGTTTTAACCAAA
62 AATGAATGGTTTTTTCTTCACATTTCTCAAGGCAGA-CATTCAATTACAATCTGTTTTAACCAAA
* *
26351 AATGT--AAAAATTCAACTTAAAATCAATTATGAGATT
126 AATATAAAAAAATTCAACTTAAAATCAATTATAAGATT
26387 ACAAAACTAT
Statistics
Matches: 538, Mismatches: 109, Indels: 58
0.76 0.15 0.08
Matches are distributed among these distances:
168 1 0.00
169 77 0.14
170 185 0.34
171 258 0.48
172 16 0.03
173 1 0.00
ACGTcount: A:0.39, C:0.13, G:0.13, T:0.35
Consensus pattern (167 bp):
ACCATTTAAAGCGAATAATAAACTTTCAAAGGCTTGAGTGACTATAAATGGACTTTTCTGTAATG
AATGGTTTTTTCTTCACATTTCTCAAGGCAGACATTCAATTACAATCTGTTTTAACCAAAAATAT
AAAAAAATTCAACTTAAAATCAATTATAAGATTGAAA
Found at i:26106 original size:170 final size:171
Alignment explanation
Indices: 25605--26398 Score: 682
Period size: 170 Copynumber: 4.7 Consensus size: 171
25595 TTTTCCTGAT
* * * * * **
25605 AATGAATGGTTTTTTCTTCACGTTTCTCAAGGCAATCATTCAATTACATTCTGTTTTAATAAAAA
1 AATGAATGCTTTTTTTTTCACGTTTCTCAAGGCAAACATTCAATTATAATCTGTTTTAACCAAAA
* * * * *
25670 ATATAAAAAAATTCAACTTAAAATTAATTATAAGATTGA-GAAACCATTTAAAGCGCATAATAAT
66 ATATAAAAAAATTCAACTTAAAATCAATTATGAGATT-ACAAAACCATTTAAAGCG-AAAATAAG
* * ** *
25734 ACTTTCAAAAGCTTGAGTGACTATAAATGGACATTTT-TTGTC
129 ACTTTCTAAGGAATGGGTGACTATAAATGGACATTTTCTTGTC
* * * * * * * * *
25776 AGTGAATAACTTTTTCTTT-ACATTTCCCAAGGTAGACATTCAAGTAGAATCTGTTTTAACCAAA
1 AATGAAT-GCTTTTTTTTTCACGTTTCTCAAGGCAAACATTCAATTATAATCTGTTTTAACCAAA
* * * * * *
25840 AATATTAAAAAATTCAACTTAAAATCAATTATGAGAATATAAATCCATTTCAAGCAAAAAATAAG
65 AATATAAAAAAATTCAACTTAAAATCAATTATGAGATTACAAAACCATTTAAAGC-GAAAATAAG
* * * *
25905 ACTTT-TAAAGGAATGGGTCACTATGAATGGAC-TTTTCTGGCC
129 ACTTTCT-AAGGAATGGGTGACTATAAATGGACATTTTCTTGTC
* * * * * *
25947 AACGAATGGTTTTTTTTTCACATTTTTCAAGGCAGACATTTAATTATAATCTG-TTTAACCAAAA
1 AATGAATGCTTTTTTTTTCACGTTTCTCAAGGCAAACATTCAATTATAATCTGTTTTAACCAAAA
* * * * * * * *
26011 ATGTGAAAAAATTCAACTTAAAATCAATTATTAGATTGCAAAACCGTTTAAAGTGATTAATAAGG
66 ATATAAAAAAATTCAACTTAAAATCAATTATGAGATTACAAAACCATTTAAAGCGA-AAATAAGA
* * * *
26076 C-TTCTAAGGTGATGGGTGAGTATAAATGGAC-TTTTCTTTTT
130 CTTTCTAAGG-AATGGGTGACTATAAATGGACATTTTCTTGTC
* * * * ** ** * * **
26117 AATGAATACCTTTTTTCT-ACGTTTTTTGAGATAAATAATCAATTATAATCTACTTTAA-CAAAA
1 AATGAATGCTTTTTTTTTCACGTTTCTCAAGGCAAACATTCAATTATAATCTGTTTTAACCAAAA
*
26180 ACTATAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGAAATAAG
66 A-TATAAAAAAATTCAACTTAAAATCAATTATGAGATTACAAAACCATTTAAAGCGA-AAATAAG
* * * * *
26245 GCTTTCGAAGGAATGGGTGACTATAAATTGACTTTTTC-TATC
129 ACTTTCTAAGGAATGGGTGACTATAAATGGACATTTTCTTGTC
* * * *
26287 AATTAATGAC-TTTTTCTTCACGTTTCCCGAGG-AAAGCATTCAATTATAATCTGTTTTAACCAA
1 AATGAATG-CTTTTTTTTTCACGTTTCTCAAGGCAAA-CATTCAATTATAATCTGTTTTAACCAA
* *
26350 AAATGT--AAAAATTCAACTTAAAATCAATTATGAGATTACAAAACTATTT
64 AAATATAAAAAAATTCAACTTAAAATCAATTATGAGATTACAAAACCATTT
26399 TGCTGCACGT
Statistics
Matches: 495, Mismatches: 111, Indels: 36
0.77 0.17 0.06
Matches are distributed among these distances:
169 78 0.16
170 208 0.42
171 196 0.40
172 13 0.03
ACGTcount: A:0.40, C:0.13, G:0.12, T:0.35
Consensus pattern (171 bp):
AATGAATGCTTTTTTTTTCACGTTTCTCAAGGCAAACATTCAATTATAATCTGTTTTAACCAAAA
ATATAAAAAAATTCAACTTAAAATCAATTATGAGATTACAAAACCATTTAAAGCGAAAATAAGAC
TTTCTAAGGAATGGGTGACTATAAATGGACATTTTCTTGTC
Found at i:26540 original size:941 final size:938
Alignment explanation
Indices: 24713--27339 Score: 3646
Period size: 941 Copynumber: 2.8 Consensus size: 938
24703 NNNNNNNNNN
24713 TCCGTTTTAATAAAAAATATAAAAAAATTCAACTTAAAATCAATTATGAGATT-ACGAAACCATT
1 TCCGTTTTAATAAAAAATATAAAAAAATTCAACTTAAAATCAATTATGAGATTGA-GAAACCATT
*
24777 TAAAGCGTATAATAATACTTTCAAAAGCTTGAGTGTCTATAAATGGACATTTTTTGTCAATGAAT
65 TAAAGCGTATAATAATACTTTCAAAAGCTTGAGTGACTATAAATGGACATTTTTTGTCAATGAAT
* **
24842 AACTTTTTCTTTACATTTCCTAAGGTAGACATTCAATTAGAATCTGTTTTAACCAAAAATATTNN
130 AACTTTTTCTTTACATTTCCCAAGGTAGACATTCAATTAGAATCTGTTTTAACCAAAAATATTAA
******** *
24907 NNNNNNNNACTTAAAATCAATTATGAGAATATAAATCCATTTAAAGCGAGAAATAAGACTTTTAA
195 AAAATTCAACTTAAAATCAATTATGAGAATATAAATCCATTTAAAGCGAAAAATAAGACTTTTAA
* * * *
24972 AAGAATAGGTCACTATAAATGGACTTTTCTTGCCAAGGAATGGTTTTTTCTTCATATTTTTCAAG
260 AGGAATGGGTCACTATAAATGGACTTTTCTTGCCAACGAATGGTTTTTTCTTCACATTTTTCAAG
* *********
25037 GCACACATTCAATTATAATCTGTTTAACCANNNNNNNNNNAAAATTCAACTTAAAATCAATTATC
325 GCAAACATTCAATTATAATCTGTTTAACCA-AAAATGTAAAAAATTCAACTTAAAATCAATTATC
* * *
25102 AAATTGCAAAACCGTTTAAAGTGATTAATAAGGCTTCTAAAGTAATGGGTGACTATAAATGGACT
389 AGATTGCAAAACCGTTTAAAGTGATTAATAAGGCTTCTAAGGTGATGGGTGACTATAAATGGACT
* *
25167 TTTTTTTTAATGAATA-TTTTTTTTTACGTTTTTCGAGATAAATAATCAATTATAATCTACTTTA
454 TTTTTTTTAATGAATACCTTTTTTCTACGTTTTTCGAGATAAATAATCAATTATAATCTACTTTA
* * *
25231 ACGAAAAGTATAAAAAAATTCAACTTAAAATCAATTATGAGATTGTAAAACCATTTAAAGCGAGT
519 ACAAAAAATATAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGT
*
25296 AATAAGGCTTTCGAAGGAATGAGTGACTATAAATGGACTTTTTCTGCCAATGAATGAGTTTTTCT
584 AATAAGGCTTTCGAAGGAATGAGTGACTATAAATGGACTTTTTCT-CCAATGAATGACTTTTTCT
* * * *
25361 TCACGTTTCTCGAGAAAAACATTCAATTATAATCTGTTTTAACCAAAAAAGTTAAAAATTGAACT
648 TCACGTTTCCCGAGGAAAACATTCAATTATAATCTGTTTTAACCAAAAATG-TAAAAATTCAACT
* * *
25426 GAAAATCAATTATGAGATTACAAAACTATTTTACTGCATGTTTCTCAAGGTAGAGATTCAATTAT
712 TAAAATCAATTATGAGATTACAAAACTATTTTACTGCACGTTTCTCAAGGTAAAGATTCAATTAT
*
25491 AATAAATTTTAACCAAAAATGTAAAAGAATATCAATTATGTGATTATAAGACCATTTAAAGGGAG
777 AATAAATTTTAACCAAAAATGTAAAAGAATATCAATTATGTGATTATAAGACCATTTAAAGCGAG
*
25556 TAATAAAGCTTTCAAAGGCTTGAGTGAATAAAAATCGGCTTTTCCT-GATAATGAATGGTTTTTT
842 TAATAAAGCTTTCAAAGGCTTGAGTGAATAAAAATCGGCTTTTCCTCG-CAATGAATGG-TTTTT
*
25620 CTTCACGTTTCTCAAGGCAATCATTCAATTACAT
905 CGTCACGTTTCTCAAGGCAATCATTCAATTACAT
* * *
25654 TCTGTTTTAATAAAAAATATAAAAAAATTCAACTTAAAATTAATTATAAGATTGAGAAACCATTT
1 TCCGTTTTAATAAAAAATATAAAAAAATTCAACTTAAAATCAATTATGAGATTGAGAAACCATTT
* *
25719 AAAGCGCATAATAATACTTTCAAAAGCTTGAGTGACTATAAATGGACATTTTTTGTCAGTGAATA
66 AAAGCGTATAATAATACTTTCAAAAGCTTGAGTGACTATAAATGGACATTTTTTGTCAATGAATA
*
25784 ACTTTTTCTTTACATTTCCCAAGGTAGACATTCAAGTAGAATCTGTTTTAACCAAAAATATTAAA
131 ACTTTTTCTTTACATTTCCCAAGGTAGACATTCAATTAGAATCTGTTTTAACCAAAAATATTAAA
* *
25849 AAATTCAACTTAAAATCAATTATGAGAATATAAATCCATTTCAAGCAAAAAATAAGACTTTTAAA
196 AAATTCAACTTAAAATCAATTATGAGAATATAAATCCATTTAAAGCGAAAAATAAGACTTTTAAA
* * *
25914 GGAATGGGTCACTATGAATGGACTTTTCTGGCCAACGAATGGTTTTTTTTTCACATTTTTCAAGG
261 GGAATGGGTCACTATAAATGGACTTTTCTTGCCAACGAATGGTTTTTTCTTCACATTTTTCAAGG
* * *
25979 CAGACATTTAATTATAATCTGTTTAACCAAAAATGTGAAAAAATTCAACTTAAAATCAATTATTA
326 CAAACATTCAATTATAATCTGTTTAACCAAAAATGT-AAAAAATTCAACTTAAAATCAATTATCA
*
26044 GATTGCAAAACCGTTTAAAGTGATTAATAAGGCTTCTAAGGTGATGGGTGAGTATAAATGGACTT
390 GATTGCAAAACCGTTTAAAGTGATTAATAAGGCTTCTAAGGTGATGGGTGACTATAAATGGACTT
*
26109 TTCTTTTTAATGAATACCTTTTTTCTACGTTTTTTGAGATAAATAATCAATTATAATCTACTTTA
455 TT-TTTTTAATGAATACCTTTTTTCTACGTTTTTCGAGATAAATAATCAATTATAATCTACTTTA
* *
26174 ACAAAAACTATAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGA
519 ACAAAAAATATAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGT
* * * *
26239 AATAAGGCTTTCGAAGGAATGGGTGACTATAAATTGACTTTTTCTATCAATTAATGACTTTTTCT
584 AATAAGGCTTTCGAAGGAATGAGTGACTATAAATGGACTTTTTCT-CCAATGAATGACTTTTTCT
*
26304 TCACGTTTCCCGAGGAAAGCATTCAATTATAATCTGTTTTAACCAAAAATGTAAAAATTCAACTT
648 TCACGTTTCCCGAGGAAAACATTCAATTATAATCTGTTTTAACCAAAAATGTAAAAATTCAACTT
* *
26369 AAAATCAATTATGAGATTACAAAACTATTTTGCTGCACGTTTCTCATA-GTAAAGATTTAATTAT
713 AAAATCAATTATGAGATTACAAAACTATTTTACTGCACGTTTCTCA-AGGTAAAGATTCAATTAT
*
26433 AATAAATTTTAACCAAAAATGTAAAAGAATATTAATTATGTGATTATAAGACCATTTAAAGCGAG
777 AATAAATTTTAACCAAAAATGTAAAAGAATATCAATTATGTGATTATAAGACCATTTAAAGCGAG
* *
26498 TAATAAAGCTTTCAAAGGCTTGAGTGGA-AAAAAT-GAGCTTTTCTTCGCAATGAATGGTTTTTC
842 TAATAAAGCTTTCAAAGGCTTGAGTGAATAAAAATCG-GCTTTTCCTCGCAATGAATGGTTTTTC
*
26561 GTCACGTTTCTCAAGGCAATCATTCAATTGCAT
906 GTCACGTTTCTCAAGGCAATCATTCAATTACAT
26594 TCCGTTTTAATAAAAAATATAAAAAAATTCAACTTAAAATCAATTATGAGATTGTA-AAACCATT
1 TCCGTTTTAATAAAAAATATAAAAAAATTCAACTTAAAATCAATTATGAGATTG-AGAAACCATT
* * * ** * * *
26658 TAAAGCGTGTAACAAGACTTT-GGAAGGTATGAGTTACTATAAATGGACATTTCTTGTCAATGAA
65 TAAAGCGTATAATAATACTTTCAAAAGCT-TGAGTGACTATAAATGGACATTTTTTGTCAATGAA
** * *
26722 TAACTTTTTCTTTACATTTTTCAAGGTAGATATTCAATTAGAATCTGTTTTAACTAAAAATATTA
129 TAACTTTTTCTTTACATTTCCCAAGGTAGACATTCAATTAGAATCTGTTTTAACCAAAAATATTA
* * * * * * *
26787 ACAAATTTAACTTAAAATCAATTATGAAAATATAAATCCATTTAAAGCGAACAAGAAGGCTTTTG
194 AAAAATTCAACTTAAAATCAATTATGAGAATATAAATCCATTTAAAGCGAAAAATAAGACTTTTA
* ** * *
26852 AAGGAATGGGTGACTATAAATGGACTTTTCTTGCCAATAAATGGTTTGTTCTT--CATGTTTCCT
259 AAGGAATGGGTCACTATAAATGGACTTTTCTTGCCAACGAATGGTTTTTTCTTCACAT-TTTTC-
* * ** * *
26915 AAAGCAAACATTCAATTATATTCTGTTTAAATAAAAATGTAGAAAAATTCAATTTAAAATTAATT
322 AAGGCAAACATTCAATTATAATCTGTTTAACCAAAAATGTA-AAAAATTCAACTTAAAATCAATT
** * * * * * * *
26980 ATCAGATTATAAAACCATTTAAAGTGATCAAAAAGGCTTCTAAGGGGATGAGTGTCTACAAATGG
386 ATCAGATTGCAAAACCGTTTAAAGTGATTAATAAGGCTTCTAAGGTGATGGGTGACTATAAATGG
* * * * * *
27045 ACTCTTTTTTTCAATGAATGCC-TTTTTCTTCATGTTTATCGAGGTAAATAATCAATTATAAACT
451 ACT-TTTTTTTTAATGAATACCTTTTTTC-T-ACGTTTTTCGAGATAAATAATCAATTATAATCT
* * * * *
27109 ATTTTAATAAAAAATATAAAAAAATTTAACTTAAAATTAATTACGAGATTATAAAACCATTTAAA
513 ACTTTAACAAAAAATATAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAA
* ** * * * * *
27174 GCGAGTAATAAGGCTTCCGAAGGCTTGCA-TGACTAGAAGTGGACTTTTTCTGCTAATGGATTAC
578 GCGAGTAATAAGGCTTTCGAAGGAATG-AGTGACTATAAATGGACTTTTTCT-CCAATGAATGAC
* * * * * * * *
27238 TTTTGCTTTACGTTTCCC-AAGACAAACATTCAATTAT-ATATATTTTCATCAGAAATGTAAAGC
641 TTTTTCTTCACGTTTCCCGAGGA-AAACATTCAATTATAATCTGTTTTAACCAAAAATGTAAA--
* *
27301 AATTCAACTT-AAATCAATTATGAGATTACGAAACCATTT
703 AATTCAACTTAAAATCAATTATGAGATTACAAAACTATTT
27340 AAAGTGAGTA
Statistics
Matches: 1501, Mismatches: 166, Indels: 38
0.88 0.10 0.02
Matches are distributed among these distances:
938 3 0.00
939 15 0.01
940 456 0.30
941 629 0.42
942 185 0.12
943 213 0.14
ACGTcount: A:0.39, C:0.13, G:0.13, T:0.35
Consensus pattern (938 bp):
TCCGTTTTAATAAAAAATATAAAAAAATTCAACTTAAAATCAATTATGAGATTGAGAAACCATTT
AAAGCGTATAATAATACTTTCAAAAGCTTGAGTGACTATAAATGGACATTTTTTGTCAATGAATA
ACTTTTTCTTTACATTTCCCAAGGTAGACATTCAATTAGAATCTGTTTTAACCAAAAATATTAAA
AAATTCAACTTAAAATCAATTATGAGAATATAAATCCATTTAAAGCGAAAAATAAGACTTTTAAA
GGAATGGGTCACTATAAATGGACTTTTCTTGCCAACGAATGGTTTTTTCTTCACATTTTTCAAGG
CAAACATTCAATTATAATCTGTTTAACCAAAAATGTAAAAAATTCAACTTAAAATCAATTATCAG
ATTGCAAAACCGTTTAAAGTGATTAATAAGGCTTCTAAGGTGATGGGTGACTATAAATGGACTTT
TTTTTTAATGAATACCTTTTTTCTACGTTTTTCGAGATAAATAATCAATTATAATCTACTTTAAC
AAAAAATATAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAA
TAAGGCTTTCGAAGGAATGAGTGACTATAAATGGACTTTTTCTCCAATGAATGACTTTTTCTTCA
CGTTTCCCGAGGAAAACATTCAATTATAATCTGTTTTAACCAAAAATGTAAAAATTCAACTTAAA
ATCAATTATGAGATTACAAAACTATTTTACTGCACGTTTCTCAAGGTAAAGATTCAATTATAATA
AATTTTAACCAAAAATGTAAAAGAATATCAATTATGTGATTATAAGACCATTTAAAGCGAGTAAT
AAAGCTTTCAAAGGCTTGAGTGAATAAAAATCGGCTTTTCCTCGCAATGAATGGTTTTTCGTCAC
GTTTCTCAAGGCAATCATTCAATTACAT
Found at i:26783 original size:171 final size:167
Alignment explanation
Indices: 26466--27359 Score: 587
Period size: 171 Copynumber: 5.3 Consensus size: 167
26456 AAAGAATATT
* * * ** * *
26466 AATTATGTGATTATAAGACCATTTAAAGCGAGTAATAAA-GCTTTCAAAGGCTTGAGTGGA--AA
1 AATTATGAGATTATAAAACCATTTAAAGCGAGTAA-AAAGGCTTT-GAAGGAATGAGT-TACTAT
** * * *
26528 AAAT-GAGCTTTTCTTCG-CAATGAATGGTTTTTCGTCACGTTTCTCAAGG-CAATCATTCAATT
63 AAATGGA-C-TTTCTT-GTCAATGAATACTTTTTCTTCATGTTT-TCAAGGTAAAT-ATTCAATT
** * *
26590 GCATTCCGTTTTAATAAAAAATATAAAAAAATTCAACTTAAAATC
123 ATAATCTGTTTTAATAAAAAATATAAAAAAATTCAACTTAAAATC
* * * * *
26635 AATTATGAGATTGTAAAACCATTTAAAGCGTGTAACAAGACTTTGGAAGGTATGAGTTACTATAA
1 AATTATGAGATTATAAAACCATTTAAAGCGAGTAAAAAGGCTTT-GAAGGAATGAGTTACTATAA
* *
26700 ATGGACATTTCTTGTCAATGAATAACTTTTTCTTTACAT-TTTTCAAGGTAGATATTCAATTAGA
65 ATGGAC-TTTCTTGTCAATGAAT-ACTTTTTC-TT-CATGTTTTCAAGGTAAATATTCAATTATA
* * *
26764 ATCTGTTTTAACT-AAAAATATTAACAAATTTAACTTAAAATC
126 ATCTGTTTTAA-TAAAAAATATAAAAAAATTCAACTTAAAATC
* * * ** * * *
26806 AATTATGAAAATATAAATCCATTTAAAGCGAACAAGAAGGCTTTTGAAGGAATGGGTGACTATAA
1 AATTATGAGATTATAAAACCATTTAAAGCGAGTAAAAAGGC-TTTGAAGGAATGAGTTACTATAA
* * ** * * * * *
26871 ATGGACTTTTCTTGCCAATAAATGGTTTGTTCTTCATGTTTCCTAAAGCAAACATTCAATTATAT
65 ATGGAC-TTTCTTGTCAATGAATACTTT-TTCTTCATGTTTTC-AAGGTAAATATTCAATTATAA
* * * * *
26936 TCTGTTTAAAT-AAAAATGTAGAAAAATTCAATTTAAAATT
127 TCTGTTTTAATAAAAAATATAAAAAAATTCAACTTAAAATC
* * *
26976 AATTATCAGATTATAAAACCATTTAAAGTGA-TCAAAAAGGCTTCT-AAGGGGATGAGTGT-CTA
1 AATTATGAGATTATAAAACCATTTAAAGCGAGT-AAAAAGGCTT-TGAA-GGAATGAGT-TACTA
* * * * * *
27038 CAAATGGACTCTTTTTTTCAATGAATGCCTTTTTCTTCATGTTTATCGAGGTAAATAATCAATTA
62 TAAATGGACT-TTCTTGTCAATGAAT-ACTTTTTCTTCATGTTT-TCAAGGTAAATATTCAATTA
* * * *
27103 TAAACTATTTTAATAAAAAATATAAAAAAATTTAACTTAAAATT
124 TAATCTGTTTTAATAAAAAATATAAAAAAATTCAACTTAAAATC
* * * ** * *
27147 AATTACGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTCCGAAGGCTTGCA-TGACTAGA
1 AATTATGAGATTATAAAACCATTTAAAGCGAGTAAAAAGGCTT-TGAAGGAATG-AGTTACTATA
* * * * * * * ** *
27211 AGTGGACTTT-TTCTGCTAATGGATTACTTTTGCTTTACGTTTCCCAAGACAAACATTCAATTAT
64 AATGGACTTTCTTGT-C-AAT-GAATACTTTTTCTTCATGTTT-TCAAGGTAAATATTCAATTAT
* * * * * * **
27275 -ATATATTTTCATCAGAAATGTAAAGCAATTCAACTT-AAATC
125 AATCTGTTTTAATAAAAAATATAAAAAAATTCAACTTAAAATC
** * *
27316 AATTATGAGATTACGAAACCATTTAAAGTGAGTAATAAGGCTTT
1 AATTATGAGATTATAAAACCATTTAAAGCGAGTAAAAAGGCTTT
27360 TTAAGNNNNN
Statistics
Matches: 569, Mismatches: 127, Indels: 59
0.75 0.17 0.08
Matches are distributed among these distances:
168 3 0.01
169 99 0.17
170 180 0.32
171 268 0.47
172 17 0.03
173 2 0.00
ACGTcount: A:0.39, C:0.13, G:0.14, T:0.35
Consensus pattern (167 bp):
AATTATGAGATTATAAAACCATTTAAAGCGAGTAAAAAGGCTTTGAAGGAATGAGTTACTATAAA
TGGACTTTCTTGTCAATGAATACTTTTTCTTCATGTTTTCAAGGTAAATATTCAATTATAATCTG
TTTTAATAAAAAATATAAAAAAATTCAACTTAAAATC
Found at i:31895 original size:170 final size:170
Alignment explanation
Indices: 31289--33092 Score: 1546
Period size: 171 Copynumber: 10.6 Consensus size: 170
31279 NNNNNNNNNA
* * ** *
31289 GCTTTTTCTTCACGTTTCCCAAGACAAACATTCAATTATAATCTG-TTTAACCAAAAATATAAAA
1 GCTTTTTCTTCACGTTTCCCAAGGCAAACATTCAATTATAATATGTTTTAATAAAAAATGT-AAA
* * * * *
31353 AAATTCAGA-TTAAAATCAATTATCAGATTACAAAACCATTTAAAGTTATTACTAAGG-TTTCT-
65 AATTTCA-ACTTAAAATCAATTATGAGATTACAAAACCATTTAAAGTGAGTAATAAGGCTTT-TG
* * * **
31415 AAGGGGATAGGTGACTATAAATGGACTCTTT-TTTTCAATGAATG
128 AA-GGAATGGGTGACTATAAATGAACT-TTTCTTGCCAATGAATG
* * ** * * * * * *
31459 CCTTTCTCTTCACGTTTATCGAGGTAAATAATCAATTATAA-ACTATTTTAATAAAAAATATAAA
1 GCTTTTTCTTCACGTTTCCCAAGGCAAACATTCAATTATAATA-TGTTTTAATAAAAAATGT-AA
* * * * * *
31523 AAAATTCAATTTAAAATTAATTATGAGATTATAAAACCATTGAAAGCT-AGTAAAAAGGCTTTTG
64 AAATTTCAACTTAAAATCAATTATGAGATTACAAAACCATTTAAAG-TGAGTAATAAGGCTTTTG
** ** * * * * * *
31587 AAGGCTTGCATGACTAGAAGTGGACTTTT-TATGCTAATGGATT
128 AAGGAATGGGTGACTATAAATGAACTTTTCT-TGCCAATGAATG
* * * * *
31630 GCTTTTGT-TTCACGTTTCCCAAGGCAAACATTCAATTATATTATATTTTCATCAGAAATGTGAA
1 GCTTTT-TCTTCACGTTTCCCAAGGCAAACATTCAATTATAATATGTTTTAATAAAAAATGT-AA
* * *
31694 GCAA-TTGAACTTAAAATCAATTATGAGATTACAAAACCATTTAAAGTGAGTAATAAGGCTTTTT
64 -AAATTTCAACTTAAAATCAATTATGAGATTACAAAACCATTTAAAGTGAGTAATAAGGCTTTTG
* * * *
31758 AAGAAATTGGTGACTATAAATGAACTTTTCTTCCCAGTGAATG
128 AAGGAATGGGTGACTATAAATGAACTTTTCTTGCCAATGAATG
* * * * * * * * **
31801 GGTTTTTATTCTCGTTTCCCAAGGCAGACA-CCAATTATAATCTGTTTTCATGAAAAATACAAAA
1 GCTTTTTCTTCACGTTTCCCAAGGCAAACATTCAATTATAATATGTTTTAATAAAAAATGTAAAA
* * *
31865 AGTTTCAAAC-TAAAATCAATTATGAGATTACAACACCATTAAAAGTGACTAATAAGGCTTTTGA
66 A-TTTC-AACTTAAAATCAATTATGAGATTACAAAACCATTTAAAGTGAGTAATAAGGCTTTTGA
* * * *
31929 AGGAATAGGTGACTATAAGTAAAATTTTCTT-CGCAATG-ATG
129 AGGAATGGGTGACTATAAATGAACTTTTCTTGC-CAATGAATG
* * * * * * * * *
31970 CCGTTTTCTTCACATTTCCTAAGCCATACATTCAATAATGATATGTTTTAATGAAAAATGTAAAA
1 GCTTTTTCTTCACGTTTCCCAAGGCAAACATTCAATTATAATATGTTTTAATAAAAAATGT-AAA
* * * * * *
32035 AAATTCAACTTAAAATGAATTATGAGATTATAAAACCATTTAAAGTAAGCAATAAGGCTTTCGAA
65 AATTTCAACTTAAAATCAATTATGAGATTACAAAACCATTTAAAGTGAGTAATAAGGCTTTTGAA
* ** *
32100 GGAATGGGTGACTATATAT-ATACTTTTCTTATCAATGAATA
130 GGAATGGGTGACTATAAATGA-ACTTTTCTTGCCAATGAATG
* * * * * *
32141 GCTTTTTCTTCATGTTTCTCAAGACAGACATTCAATTATAATCTG-TTTAACT-AAAACTGTAAA
1 GCTTTTTCTTCACGTTTCCCAAGGCAAACATTCAATTATAATATGTTTTAA-TAAAAAATGT--A
* * * *
32204 AAAATTT-AACTTAAAATCAATTATCAGATTACTAAACCATTTAAAGTGATTAATAAGGCTTCTG
63 AAAATTTCAACTTAAAATCAATTATGAGATTACAAAACCATTTAAAGTGAGTAATAAGGCTTTTG
* * * *
32268 AGGGGATGGGTAACTATAAATGGACTTTTCTTGCCAATGAATG
128 AAGGAATGGGTGACTATAAATGAACTTTTCTTGCCAATGAATG
* * ** **** * * * * * * *
32311 CCTTTTTCATCATATTTTTTGAGGCAAATAGTCAATTATAATTTATTTTAACAAAAACTATAAAA
1 GCTTTTTCTTCACGTTTCCCAAGGCAAACATTCAATTATAATATGTTTTAATAAAAAATGT-AAA
* * * * * * *
32376 AAATCCAACTTAAAATCAATTATGAGATTATAAAACTATTTCAAGCGAGTAATAAGGCTTTCGAA
65 AATTTCAACTTAAAATCAATTATGAGATTACAAAACCATTTAAAGTGAGTAATAAGGCTTTTGAA
** ** * * * * *
32441 GGCTTGCTTGACTATAAGTGGACTTTT-TATGCTAATGGATT
130 GGAATGGGTGACTATAAATGAACTTTTCT-TGCCAATGAATG
* * * * * * *
32482 ACTTTTGCTTCACGTTTTCTAAGACAAACATTCAATTATAATATATTTTAATCAAAAATGTAAAG
1 GCTTTTTCTTCACGTTTCCCAAGGCAAACATTCAATTATAATATGTTTTAATAAAAAATGTAAA-
*
32547 CAA-TTCAACTTAAAATCAATTATGAGATTACAAAACCATTTAAAGTGTGTAATAAGGCTTTTGA
65 -AATTTCAACTTAAAATCAATTATGAGATTACAAAACCATTTAAAGTGAGTAATAAGGCTTTTGA
* * * *
32611 AGGAATTGGTGACAATAAATGAACTTTGCTTGCCAGTGAATG
129 AGGAATGGGTGACTATAAATGAACTTTTCTTGCCAATGAATG
* ** * * * * *
32653 GCTTTTTCTTCACGTTTTCTGAGGCAAACATTTAATTATAATTTGTTGTCACAAAAAATGTAAAA
1 GCTTTTTCTTCACGTTTCCCAAGGCAAACATTCAATTATAATATGTTTTAATAAAAAATGT-AAA
* *
32718 AATTTCAACTTAAAATCAATTATGAGATTATAACACCATTTAAAGTGAGTAATAAGGCTTTTGAA
65 AATTTCAACTTAAAATCAATTATGAGATTACAAAACCATTTAAAGTGAGTAATAAGGCTTTTGAA
* * *
32783 GGAATAGGTGACTATAAATAAACTTTTCTTGGCAATG-ATG
130 GGAATGGGTGACTATAAATGAACTTTTCTTGCCAATGAATG
* * * * * * * * * *
32823 GCCTTTACTTCACATTTCTCAAGGCAGATATTGAATTATATTATGTTTTAACAAAAAATGCACAA
1 GCTTTTTCTTCACGTTTCCCAAGGCAAACATTCAATTATAATATGTTTTAATAAAAAATGTA-AA
* * * * * *
32888 AATTTCAACTTAAAATGAATTATGAGATTATAAAACCATATAAAGTGAGCAATGAGGCTTTTGAC
65 AATTTCAACTTAAAATCAATTATGAGATTACAAAACCATTTAAAGTGAGTAATAAGGCTTTTGAA
* *
32953 GGAATGGGTGACTATAAATGGACTTTTGTTGCCAATGAATG
130 GGAATGGGTGACTATAAATGAACTTTTCTTGCCAATGAATG
** * * *
32994 GC-TTTTCTTTCTTGTTTCCCAAGACAAGCATTCAATTATAATATGTTTTAATTAAAAATGTAAA
1 GCTTTTTC-TTCACGTTTCCCAAGGCAAACATTCAATTATAATATGTTTTAATAAAAAATGTAAA
* * *
33058 AAATTCAACTTAAAATTAATTATGAAATTACAAAA
65 AATTTCAACTTAAAATCAATTATGAGATTACAAAA
33093 NNNNNNNNNN
Statistics
Matches: 1310, Mismatches: 286, Indels: 76
0.78 0.17 0.05
Matches are distributed among these distances:
168 2 0.00
169 32 0.02
170 565 0.43
171 694 0.53
172 17 0.01
ACGTcount: A:0.38, C:0.13, G:0.14, T:0.35
Consensus pattern (170 bp):
GCTTTTTCTTCACGTTTCCCAAGGCAAACATTCAATTATAATATGTTTTAATAAAAAATGTAAAA
ATTTCAACTTAAAATCAATTATGAGATTACAAAACCATTTAAAGTGAGTAATAAGGCTTTTGAAG
GAATGGGTGACTATAAATGAACTTTTCTTGCCAATGAATG
Found at i:31924 original size:341 final size:341
Alignment explanation
Indices: 31289--33092 Score: 1559
Period size: 341 Copynumber: 5.3 Consensus size: 341
31279 NNNNNNNNNA
* * * *
31289 GCTTTTTCTTCACGTTTCCCAAGACAAACATTCAATTATAA-TCTG-TTTAACCAAAAATATAAA
1 GCTTTTTCTTCACGTTTCCCAAGGCAAACATTCAATTATAATTATGTTTTAATCAAAAATGTAAA
* * * * *
31352 AAAATTCAGA-TTAAAATCAATTATCAGATTACAAAACCATTTAAAGTTATTACTAAGG-TTTCT
66 AAAATTCA-ACTTAAAATCAATTATGAGATTACAAAACCATTTAAAGTGAGTAATAAGGCTTTCG
* * ** * * *
31415 AAGGGGATAGGTGACTATAAATGGACTCTTT-TTTTCAATGAATGCCTTTCTCTTCACGTTTATC
130 AA-GGAATAGGTGACTATAAATGAACT-TTTCTTGCCAATGAATGGCTTTTTCTTCACGTTTCTC
* * * * * * * * * * *
31479 GAGGTAAATAATCAATTATAAACTATTTTAATAAAAAATATAAAAAAATTCAATTTAAAATTAAT
193 AAGGCAGACATTCAATTATAATCTGTTTTAATAAAAAATA-CAAAAATTTCAACTTAAAATCAAT
* * * * * * * *
31544 TATGAGATTATAAAACCATTGAAAGCT-AGTAAAAAGGCTTTTGAAGGCTTGCATGACTAGAAGT
257 TATGAGATTACAAAACCATTAAAAG-TGACTAATAAGGCTTTTGAAGGATTG-GTGACTATAAAT
*
31608 GGACTTTT-TATGCTAATGGATT
320 GGACTTTTCT-TGCCAATGGATT
* * * *
31630 GCTTTTGT-TTCACGTTTCCCAAGGCAAACATTCAATTAT-ATTATATTTTCATCAGAAATGTGA
1 GCTTTT-TCTTCACGTTTCCCAAGGCAAACATTCAATTATAATTATGTTTTAATCAAAAATGTAA
** * **
31693 AGCAATTGAACTTAAAATCAATTATGAGATTACAAAACCATTTAAAGTGAGTAATAAGGCTTTTT
65 AAAAATTCAACTTAAAATCAATTATGAGATTACAAAACCATTTAAAGTGAGTAATAAGGCTTTCG
* * * * * * * *
31758 AAGAAATTGGTGACTATAAATGAACTTTTCTTCCCAGTGAATGGGTTTTTATTCTCGTTTCCCAA
130 AAGGAATAGGTGACTATAAATGAACTTTTCTTGCCAATGAATGGCTTTTTCTTCACGTTTCTCAA
* * *
31823 GGCAGACA-CCAATTATAATCTGTTTTCATGAAAAATACAAAAAGTTTCAAAC-TAAAATCAATT
195 GGCAGACATTCAATTATAATCTGTTTTAATAAAAAATACAAAAA-TTTC-AACTTAAAATCAATT
* * * **
31886 ATGAGATTACAACACCATTAAAAGTGACTAATAAGGCTTTTGAAGGAATAGGTGACTATAAGTAA
258 ATGAGATTACAAAACCATTAAAAGTGACTAATAAGGCTTTTGAAGG-ATTGGTGACTATAAATGG
*
31951 AATTTTCTT-CGCAAT-GA-T
322 ACTTTTCTTGC-CAATGGATT
* * * * * * * *
31969 GCCGTTTTCTTCACATTTCCTAAGCCATACATTCAATAATGA-TATGTTTTAATGAAAAATGTAA
1 G-CTTTTTCTTCACGTTTCCCAAGGCAAACATTCAATTATAATTATGTTTTAATCAAAAATGTAA
* * * *
32033 AAAAATTCAACTTAAAATGAATTATGAGATTATAAAACCATTTAAAGTAAGCAATAAGGCTTTCG
65 AAAAATTCAACTTAAAATCAATTATGAGATTACAAAACCATTTAAAGTGAGTAATAAGGCTTTCG
* * ** * *
32098 AAGGAATGGGTGACTATATAT-ATACTTTTCTTATCAATGAATAGCTTTTTCTTCATGTTTCTCA
130 AAGGAATAGGTGACTATAAATGA-ACTTTTCTTGCCAATGAATGGCTTTTTCTTCACGTTTCTCA
* ** *
32162 AGACAGACATTCAATTATAATCTG-TTTAACTAAAACTGTAAAAAAATTT-AACTTAAAATCAAT
194 AGGCAGACATTCAATTATAATCTGTTTTAA-TAAAA-AATACAAAAATTTCAACTTAAAATCAAT
* * * * * * * *
32225 TATCAGATTACTAAACCATTTAAAGTGATTAATAAGGCTTCTGAGGGGATGGGTAACTATAAATG
257 TATGAGATTACAAAACCATTAAAAGTGACTAATAAGGCTTTTGA-AGGATTGGTGACTATAAATG
*
32290 GACTTTTCTTGCCAAT-GAAT
321 GACTTTTCTTGCCAATGGATT
* ** **** * * * *
32310 GCCTTTTTCATCATATTTTTTGAGGCAAATAGTCAATTATAATT-TATTTTAA-CAAAAACTATA
1 G-CTTTTTCTTCACGTTTCCCAAGGCAAACATTCAATTATAATTATGTTTTAATCAAAAA-TGTA
* * * * *
32373 AAAAAATCCAACTTAAAATCAATTATGAGATTATAAAACTATTTCAAGCGAGTAATAAGGCTTTC
64 AAAAAATTCAACTTAAAATCAATTATGAGATTACAAAACCATTTAAAGTGAGTAATAAGGCTTTC
* * * * * * * ** *
32438 GAAGG-CTTGCTTGACTATAAGTGGACTTTT-TATGCTAATGGATTACTTTTGCTTCACGTTT-T
129 GAAGGAATAG-GTGACTATAAATGAACTTTTCT-TGCCAATGAATGGCTTTTTCTTCACGTTTCT
* * * * * **
32500 CTAAGACAAACATTCAATTATAATATATTTTAATCAAAAATGTAAAGCAA-TTCAACTTAAAATC
192 C-AAGGCAGACATTCAATTATAATCTGTTTTAATAAAAAATACAAA--AATTTCAACTTAAAATC
* ** *
32564 AATTATGAGATTACAAAACCATTTAAAGTGTGTAATAAGGCTTTTGAAGGAATTGGTGACAATAA
254 AATTATGAGATTACAAAACCATTAAAAGTGACTAATAAGGCTTTTGAAGG-ATTGGTGACTATAA
* * * * *
32629 ATGAACTTTGCTTGCCAGTGAATG
318 ATGGACTTTTCTTGCCAATGGATT
* ** * * *
32653 GCTTTTTCTTCACGTTTTCTGAGGCAAACATTTAATTATAATT-TGTTGTCA-CAAAAAATGTAA
1 GCTTTTTCTTCACGTTTCCCAAGGCAAACATTCAATTATAATTATGTTTTAATC-AAAAATGTAA
* * * *
32716 AAAATTTCAACTTAAAATCAATTATGAGATTATAACACCATTTAAAGTGAGTAATAAGGCTTTTG
65 AAAAATTCAACTTAAAATCAATTATGAGATTACAAAACCATTTAAAGTGAGTAATAAGGCTTTCG
* * * * *
32781 AAGGAATAGGTGACTATAAATAAACTTTTCTTGGCAATG-ATGGCCTTTACTTCACATTTCTCAA
130 AAGGAATAGGTGACTATAAATGAACTTTTCTTGCCAATGAATGGCTTTTTCTTCACGTTTCTCAA
* * * * * * *
32845 GGCAGATATTGAATTATATTATGTTTTAACAAAAAATGCACAAAATTTCAACTTAAAATGAATTA
195 GGCAGACATTCAATTATAATCTGTTTTAATAAAAAATACA-AAAATTTCAACTTAAAATCAATTA
* * * *
32910 TGAGATTATAAAACCA-TATAAAGTGAGC-AATGAGGCTTTTGACGGAATGGGTGACTATAAATG
259 TGAGATTACAAAACCATTA-AAAGTGA-CTAATAAGGCTTTTGAAGG-ATTGGTGACTATAAATG
* * *
32973 GACTTTTGTTGCCAATGAATG
321 GACTTTTCTTGCCAATGGATT
** * * *
32994 GC-TTTTCTTTCTTGTTTCCCAAGACAAGCATTCAATTATAA-TATGTTTTAATTAAAAATGT-A
1 GCTTTTTC-TTCACGTTTCCCAAGGCAAACATTCAATTATAATTATGTTTTAATCAAAAATGTAA
* *
33056 AAAAATTCAACTTAAAATTAATTATGAAATTACAAAA
65 AAAAATTCAACTTAAAATCAATTATGAGATTACAAAA
33093 NNNNNNNNNN
Statistics
Matches: 1181, Mismatches: 236, Indels: 93
0.78 0.16 0.06
Matches are distributed among these distances:
339 7 0.01
340 306 0.26
341 507 0.43
342 345 0.29
343 16 0.01
ACGTcount: A:0.38, C:0.13, G:0.14, T:0.35
Consensus pattern (341 bp):
GCTTTTTCTTCACGTTTCCCAAGGCAAACATTCAATTATAATTATGTTTTAATCAAAAATGTAAA
AAAATTCAACTTAAAATCAATTATGAGATTACAAAACCATTTAAAGTGAGTAATAAGGCTTTCGA
AGGAATAGGTGACTATAAATGAACTTTTCTTGCCAATGAATGGCTTTTTCTTCACGTTTCTCAAG
GCAGACATTCAATTATAATCTGTTTTAATAAAAAATACAAAAATTTCAACTTAAAATCAATTATG
AGATTACAAAACCATTAAAAGTGACTAATAAGGCTTTTGAAGGATTGGTGACTATAAATGGACTT
TTCTTGCCAATGGATT
Found at i:32603 original size:512 final size:510
Alignment explanation
Indices: 31334--33092 Score: 1423
Period size: 512 Copynumber: 3.4 Consensus size: 510
31324 TTATAATCTG
* * * * * *
31334 TTTAACCAAAAATATAAAAAAATTCAGA-TTAAAATCAATTATCAGATTACAAAACCATTTAAAG
1 TTTAACAAAAAATACAAAAAAATCCA-ACTTAAAATCAATTATGAGATTATAAAACCATATAAAG
** ** * * * ** *
31398 TTATTACTAAGG-TTTCTAAGGGGATAG-GTGACTATAAATGGACTCTTT-TTTTCAATGAATGC
65 CGAGCAATAAGGCTTTCGAA-GGAAT-GCGTGACTATAAATGGACT-TTTGTTGCCAATGAATGA
* * ** * * * * *
31460 CTTTCTCTTCACGTTT-ATCGAGGTAAATAATCAATTATAA-ACTATTTTAATAAAAAATATAAA
127 CTTT-TCTTCACGTTTCCT-AAGACAAACATTCAATTATAATA-TGTTTTAATCAAAAATGT-AA
* * * * * * *
31523 AAAATTCAATTTAAAATTAATTATGAGATTATAAAACCATTGAAAGCT-AGTAAAAAGGCTTTTG
188 AAAATTCAACTTAAAATCAATTATGAGATTACAAAACCATTTAAAG-TAAGCAATAAGGCTTTCG
** ** * * * * * * * *
31587 AAGGCTTGCATGACTAGAAGTGGACTTT--TTATGCTAATGGATTGCTTTTGT-TTCACGTTTCC
252 AAGGAATGGGTGACAATAAATGAACTTTGCTTA--CCAATGAATAGCTTTT-TCTTCACGTTTTC
* * * * * * * * ** *
31649 CAAGGCAAACATTCAATTATATTATATTTTCATC-AGAAATGTGAAGCAA-TTGAACTTAAAATC
314 TAAGACAAACATTCAATTATAATCTGTTGT-AACAAAAAATGT-AAAAAATTTCAACTTAAAATC
* * * * * * * *
31712 AATTATGAGATTACAAAACCATTTAAAGTGAGTAATAAGGCTTTTTAAGAAATTGGTGACTATAA
377 AATTATCAGATTATAACACCATTTAAAGTGAGTAATAAGGCTTCTGAAGGAATAGGTAACTATAA
* * * ** * * * * * * *
31777 ATGAACTTTTCTTCCCAGTGAATGGGTTTTTA-TTCTCGTTTCCCAAGGCAGACA-CCAATTATA
442 ATAAACTTTTCTTGCCAATG-AT-GGCCTTTACATCACATTTCTCAAGGCAAATAGTCAATTATA
* * *
31840 ATCTGT
505 TTATAT
* ** ** * * *
31846 TTTCATGAAAAATACAAAAAGTTTCAAAC-TAAAATCAATTATGAGATTACAACACCAT-TAAAA
1 TTTAACAAAAAATACAAAAA-AATCCAACTTAAAATCAATTATGAGATTATAAAACCATAT-AAA
* * * ** * *
31909 GTGA-CTAATAAGGCTTTTGAAGGAATAG-GTGACTATAAGTAAAATTTTCTT-CGCAATG-ATG
64 GCGAGC-AATAAGGCTTTCGAAGGAAT-GCGTGACTATAAATGGACTTTTGTTGC-CAATGAATG
* * * * * * *
31970 CCGTTTTCTTCACATTTCCTAAGCCATACATTCAATAATGATATGTTTTAATGAAAAATGTAAAA
126 AC-TTTTCTTCACGTTTCCTAAGACAAACATTCAATTATAATATGTTTTAATCAAAAATGT-AAA
* *
32035 AAATTCAACTTAAAATGAATTATGAGATTATAAAACCATTTAAAGTAAGCAATAAGGCTTTCGAA
189 AAATTCAACTTAAAATCAATTATGAGATTACAAAACCATTTAAAGTAAGCAATAAGGCTTTCGAA
* * * * *
32100 GGAATGGGTGACTATATAT-ATACTTTTCTTATCAATGAATAGCTTTTTCTTCATG-TTTCTCAA
254 GGAATGGGTGACAATAAATGA-ACTTTGCTTACCAATGAATAGCTTTTTCTTCACGTTTTCT-AA
* * *
32163 GACAGACATTCAATTATAATCTGTT-TAACTAAAACTGTAAAAAAATTT-AACTTAAAATCAATT
317 GACAAACATTCAATTATAATCTGTTGTAACAAAAAATGT-AAAAAATTTCAACTTAAAATCAATT
* * * * *
32226 ATCAGATTACTAA-ACCATTTAAAGTGATTAATAAGGCTTCTGAGGGGATGGGTAACTATAAATG
381 ATCAGATTA-TAACACCATTTAAAGTGAGTAATAAGGCTTCTGAAGGAATAGGTAACTATAAATA
* * * * **
32290 GACTTTTCTTGCCAATGAAT-GCCTTTTTCATCATATTTTTTGAGGCAAATAGTCAATTATAATT
445 AACTTTTCTTGCCAATG-ATGGCC-TTTACATCACATTTCTCAAGGCAAATAGTCAATTAT-ATT
32354 -TAT
507 ATAT
* * * * *
32357 TTTAACAAAAACTATAAAAAAATCCAACTTAAAATCAATTATGAGATTATAAAACTATTTCAAGC
1 TTTAACAAAAAATACAAAAAAATCCAACTTAAAATCAATTATGAGATTATAAAACCATATAAAGC
* ** * * * * *
32422 GAGTAATAAGGCTTTCGAAGGCTTGCTTGACTATAAGTGGACTTTT-TATGCTAATGGATTACTT
66 GAGCAATAAGGCTTTCGAAGGAATGCGTGACTATAAATGGACTTTTGT-TGCCAATGAATGACTT
* * *
32486 TTGCTTCACGTTTTCTAAGACAAACATTCAATTATAATATATTTTAATCAAAAATGTAAAGCAAT
130 TT-CTTCACGTTTCCTAAGACAAACATTCAATTATAATATGTTTTAATCAAAAATGTAAA-AAAT
** * *
32551 TCAACTTAAAATCAATTATGAGATTACAAAACCATTTAAAGTGTGTAATAAGGCTTTTGAAGGAA
193 TCAACTTAAAATCAATTATGAGATTACAAAACCATTTAAAGTAAGCAATAAGGCTTTCGAAGGAA
* * * * * *
32616 TTGGTGACAATAAATGAACTTTGCTTGCCAGTGAATGGCTTTTTCTTCACGTTTTCTGAGGCAAA
258 TGGGTGACAATAAATGAACTTTGCTTACCAATGAATAGCTTTTTCTTCACGTTTTCTAAGACAAA
* * * *
32681 CATTTAATTATAATTTGTTGTCACAAAAAATGTAAAAAATTTCAACTTAAAATCAATTATGAGAT
323 CATTCAATTATAATCTGTTGTAACAAAAAATGTAAAAAATTTCAACTTAAAATCAATTATCAGAT
* *
32746 TATAACACCATTTAAAGTGAGTAATAAGGCTTTTGAAGGAATAGGTGACTATAAATAAACTTTTC
388 TATAACACCATTTAAAGTGAGTAATAAGGCTTCTGAAGGAATAGGTAACTATAAATAAACTTTTC
* * * * * *
32811 TTGGCAATGATGGCCTTTACTTCACATTTCTCAAGGCAGATATTGAATTATATTATGT
453 TTGCCAATGATGGCCTTTACATCACATTTCTCAAGGCAAATAGTCAATTATATTATAT
* * * * * *
32869 TTTAACAAAAAATGCACAAAATTTCAACTTAAAATGAATTATGAGATTATAAAACCATATAAAGT
1 TTTAACAAAAAATACAAAAAAATCCAACTTAAAATCAATTATGAGATTATAAAACCATATAAAGC
* * * * *
32934 GAGCAATGAGGCTTTTGACGGAATGGGTGACTATAAATGGACTTTTGTTGCCAATGAATGGCTTT
66 GAGCAATAAGGCTTTCGAAGGAATGCGTGACTATAAATGGACTTTTGTTGCCAATGAATGACTTT
** * * *
32999 TCTTTCTTGTTTCCCAAGACAAGCATTCAATTATAATATGTTTTAATTAAAAATGTAAAAAATTC
131 TC-TTCACGTTTCCTAAGACAAACATTCAATTATAATATGTTTTAATCAAAAATGTAAAAAATTC
* *
33064 AACTTAAAATTAATTATGAAATTACAAAA
195 AACTTAAAATCAATTATGAGATTACAAAA
33093 NNNNNNNNNN
Statistics
Matches: 1001, Mismatches: 205, Indels: 83
0.78 0.16 0.06
Matches are distributed among these distances:
508 1 0.00
509 5 0.00
510 118 0.12
511 304 0.30
512 461 0.46
513 112 0.11
ACGTcount: A:0.39, C:0.13, G:0.14, T:0.35
Consensus pattern (510 bp):
TTTAACAAAAAATACAAAAAAATCCAACTTAAAATCAATTATGAGATTATAAAACCATATAAAGC
GAGCAATAAGGCTTTCGAAGGAATGCGTGACTATAAATGGACTTTTGTTGCCAATGAATGACTTT
TCTTCACGTTTCCTAAGACAAACATTCAATTATAATATGTTTTAATCAAAAATGTAAAAAATTCA
ACTTAAAATCAATTATGAGATTACAAAACCATTTAAAGTAAGCAATAAGGCTTTCGAAGGAATGG
GTGACAATAAATGAACTTTGCTTACCAATGAATAGCTTTTTCTTCACGTTTTCTAAGACAAACAT
TCAATTATAATCTGTTGTAACAAAAAATGTAAAAAATTTCAACTTAAAATCAATTATCAGATTAT
AACACCATTTAAAGTGAGTAATAAGGCTTCTGAAGGAATAGGTAACTATAAATAAACTTTTCTTG
CCAATGATGGCCTTTACATCACATTTCTCAAGGCAAATAGTCAATTATATTATAT
Found at i:35893 original size:27 final size:27
Alignment explanation
Indices: 35863--35919 Score: 114
Period size: 27 Copynumber: 2.1 Consensus size: 27
35853 ACTTCAAATG
35863 GTTTTATAATCTCATAATTCATTTTAA
1 GTTTTATAATCTCATAATTCATTTTAA
35890 GTTTTATAATCTCATAATTCATTTTAA
1 GTTTTATAATCTCATAATTCATTTTAA
35917 GTT
1 GTT
35920 GAAATTTTTT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.32, C:0.11, G:0.05, T:0.53
Consensus pattern (27 bp):
GTTTTATAATCTCATAATTCATTTTAA
Found at i:36225 original size:171 final size:169
Alignment explanation
Indices: 35949--37027 Score: 914
Period size: 171 Copynumber: 6.4 Consensus size: 169
35939 NNNNNNNCAT
* * * * * * * *
35949 ATTATAATTCAATATCTGCCTTGGGAAATGTGAAGTAAAGGCCA-TCATTGCCAAGAAAAGCTCA
1 ATTATAATTGAATGTCTGCCTTAGAAAATGTGAAGAAAAAGCCATTCATTGGCAAGAAAAGTTCA
* * * *
36013 TTTATAGTCACCCATTCCTTTAAAAACCTTATTACTCACTTTAAATGGTGTTGTAATCTCATAAT
66 TTTATAGTCA-CCATTCCTTCAAAAGCCTTATTACTCACTTTAAATGGTTTTATAATCTCATAAT
* *
36078 TGATTTTAAGTTAAACTTTTTTGCATTTTTCATGACAACAG
130 TGATTTTAAGTTAAA-TTTTTTACATTTTTCATGAAAACAG
* * *
36119 ATTATAATTGAATGTTTGCCTTAGAAAACGTGAAGAAAAAGCCATTCACTGGCAAGAAAAGTTCA
1 ATTATAATTGAATGTCTGCCTTAGAAAATGTGAAGAAAAAGCCATTCATTGGCAAGAAAAGTTCA
* * * *
36184 ATCATCGTCACCAATTCCTTCAAAAGCCTTATTACTCACTTTAAATGGTTTTGTAATCTCATAAT
66 TTTATAGTCACC-ATTCCTTCAAAAGCCTTATTACTCACTTTAAATGGTTTTATAATCTCATAAT
* * * * *
36249 TGATTTTAAGTTGAATTTCTTTACATTTTTTATTAAAATAT
130 TGATTTTAAGTTAAATTT-TTTACATTTTTCATGAAAACAG
* * * ** * * * *
36290 ATTATAATTGAATGTTTGTCTTAGAAAATGTGAAGCAAAAGTAATCCATTAGTATA-AAAAGTCC
1 ATTATAATTGAATGTCTGCCTTAGAAAATGTGAAGAAAAAGCCATTCATTGGCA-AGAAAAGTTC
* * ** * *
36354 ACTTATAGTCACACAAGT-CTTTGAAAGCCTTATTACTCACTTGAAATAGTTTTATAATCTCATA
65 ATTTATAGTCAC-C-ATTCCTTCAAAAGCCTTATTACTCACTTTAAATGGTTTTATAATCTCATA
* * ** *
36418 ATTGATTTTATG-TAAGATTTTTTATATATTTTTGGTTG-AAACAA
128 ATTGATTTTAAGTTAA-A-TTTTT-TACATTTTT-CATGAAAACAG
* * * * * * *
36462 ATTATAATTGACTGTCTGCCTCAAAAAATATAAAGAAAAAGGCATTCATTGGCAAGAAAAGTCCA
1 ATTATAATTGAATGTCTGCCTTAGAAAATGTGAAGAAAAAGCCATTCATTGGCAAGAAAAGTTCA
* * * * * * *
36527 TTTATAGTCACTCATCCCCTCAGAAGCCTTATTAATCACTTTAAACGGTTTTGTAATCTGATAAT
66 TTTATAGTCAC-CATTCCTTCAAAAGCCTTATTACTCACTTTAAATGGTTTTATAATCTCATAAT
** ** * *
36592 TGATTTTAAGTTGAAGCTTTTTACATTTTTGGT-TAAACAA
130 TGATTTTAAGTT-AAATTTTTTACATTTTTCATGAAAACAG
* * * *
36632 ATTATAATTGAATGTCTACCTCATG-AAATATGAAGAAAAAGCCATTCATTGGCAAGAAAAGTCC
1 ATTATAATTGAATGTCTGCCTTA-GAAAATGTGAAGAAAAAGCCATTCATTGGCAAGAAAAGTTC
* *
36696 ATATATAGTCACCCATT--TT-----G----A--A---ACTTTAAATGGTTTTATAATTTCATAA
65 ATTTATAGTCA-CCATTCCTTCAAAAGCCTTATTACTCACTTTAAATGGTTTTATAATCTCATAA
* * ** * *
36745 TTCATTTTAAGTTGAATTTTTTTGTATTTCTCATTAAAACAG
129 TTGATTTTAAGTT-AAATTTTTTACATTTTTCATGAAAACAG
* * * *
36787 ATTATAATTGAATGTCTAG-TTTCGGAAATGTGAAGAGAAAGCCA-TCATT-GCTAAGAAAAGTT
1 ATTATAATTGAATGTCT-GCCTTAGAAAATGTGAAGAAAAAGCCATTCATTGGC-AAGAAAAGTT
* *
36849 CATTTATAGTCATCCATTCCTTCAAAAGCCTTATTACTCACTTTTAATGGTGTTATAATCTCATA
64 CATTTATAGTCA-CCATTCCTTCAAAAGCCTTATTACTCACTTTAAATGGTTTTATAATCTCATA
* ** *
36914 ATTGATTTTAAATTGAAATTTTTTACATTTTTTGTGAAAAAAG
128 ATTGATTTTAAGTT-AAATTTTTTACATTTTTCATGAAAACAG
* * * * * * * * *
36957 ATTATAATTGAATGTATGCCTTCGGAAATGTGAATAAAAAGCTATTCACTAGTAAGAAAAATTCA
1 ATTATAATTGAATGTCTGCCTTAGAAAATGTGAAGAAAAAGCCATTCATTGGCAAGAAAAGTTCA
*
37022 CTTATA
66 TTTATA
37028 TATTATAATT
Statistics
Matches: 734, Mismatches: 136, Indels: 77
0.78 0.14 0.08
Matches are distributed among these distances:
153 2 0.00
154 80 0.11
155 40 0.05
156 2 0.00
157 1 0.00
159 1 0.00
161 1 0.00
163 1 0.00
165 1 0.00
167 1 0.00
168 1 0.00
169 1 0.00
170 215 0.29
171 250 0.34
172 133 0.18
173 2 0.00
174 2 0.00
ACGTcount: A:0.36, C:0.14, G:0.13, T:0.38
Consensus pattern (169 bp):
ATTATAATTGAATGTCTGCCTTAGAAAATGTGAAGAAAAAGCCATTCATTGGCAAGAAAAGTTCA
TTTATAGTCACCATTCCTTCAAAAGCCTTATTACTCACTTTAAATGGTTTTATAATCTCATAATT
GATTTTAAGTTAAATTTTTTACATTTTTCATGAAAACAG
Found at i:36568 original size:343 final size:341
Alignment explanation
Indices: 36030--36646 Score: 821
Period size: 343 Copynumber: 1.8 Consensus size: 341
36020 TCACCCATTC
* * *
36030 CTTTAAAAACCTTATTACTCACTTTAAATGGTGTTGTAATCTCATAATTGATTTTAAGTTAAACT
1 CTTTAAAAACCTTATTACTCACTTGAAATAGTGTTATAATCTCATAATTGATTTTAAGTTAAACT
* * * * * * *
36095 TTTTTGCATTTTTCATGACAACAGATTATAATTGAATGTTTGCCTTAGAAAACGTGAAGAAAAAG
66 TTTTTACATTTTTCATGACAACAAATTATAATTGAATGTCTGCCTCAAAAAACATAAAGAAAAAG
* * * * *
36160 CCATTCACTGGCAAGAAAAGTTCAATCATCGTCACCAATTCCTTCAAAAGCCTTATTACTCACTT
131 CCATTCACTGGCAAGAAAAGTCCAATCATAGTCACCAATCCCCTCAAAAGCCTTATTAATCACTT
* * *
36225 TAAATGGTTTTGTAATCTCATAATTGATTTTAAGTTGAA-TTTCTTTACATTTTTTATTAAA-AT
196 TAAACGGTTTTGTAATCTCATAATTGATTTTAAGTTGAAGCTT-TTTACATTTTTGATTAAACA-
36288 ATATTATAATTGAATGTTTGTCTTAGAAAATGTGAAGCAAAAGTAATCCATTAGTATAAAAAGTC
259 A-ATTATAATTGAATGTTTGTCTTAGAAAATGTGAAGCAAAAGTAATCCATTAGTATAAAAAGTC
36353 CACTTATAGTCACACAAGT
323 CACTTATAGTCACACAAGT
* * * * *
36372 CTTTGAAAGCCTTATTACTCACTTGAAATAGTTTTATAATCTCATAATTGATTTTATG-TAAGAT
1 CTTTAAAAACCTTATTACTCACTTGAAATAGTGTTATAATCTCATAATTGATTTTAAGTTAA-AC
* ** * *
36436 TTTTTATATATTTTTGGTTGA-AACAAATTATAATTGACTGTCTGCCTCAAAAAATATAAAGAAA
65 TTTTT-TACATTTTT-CATGACAACAAATTATAATTGAATGTCTGCCTCAAAAAACATAAAGAAA
* * * * *
36500 AAGGCATTCATTGGCAAGAAAAGTCCATTTATAGTCACTC-ATCCCCTCAGAAGCCTTATTAATC
128 AAGCCATTCACTGGCAAGAAAAGTCCAATCATAGTCAC-CAATCCCCTCAAAAGCCTTATTAATC
* *
36564 ACTTTAAACGGTTTTGTAATCTGATAATTGATTTTAAGTTGAAGCTTTTTACATTTTTGGTTAAA
192 ACTTTAAACGGTTTTGTAATCTCATAATTGATTTTAAGTTGAAGCTTTTTACATTTTTGATTAAA
36629 CAAATTATAATTGAATGT
257 CAAATTATAATTGAATGT
36647 CTACCTCATG
Statistics
Matches: 234, Mismatches: 35, Indels: 12
0.83 0.12 0.04
Matches are distributed among these distances:
341 3 0.01
342 72 0.31
343 152 0.65
344 7 0.03
ACGTcount: A:0.35, C:0.14, G:0.12, T:0.39
Consensus pattern (341 bp):
CTTTAAAAACCTTATTACTCACTTGAAATAGTGTTATAATCTCATAATTGATTTTAAGTTAAACT
TTTTTACATTTTTCATGACAACAAATTATAATTGAATGTCTGCCTCAAAAAACATAAAGAAAAAG
CCATTCACTGGCAAGAAAAGTCCAATCATAGTCACCAATCCCCTCAAAAGCCTTATTAATCACTT
TAAACGGTTTTGTAATCTCATAATTGATTTTAAGTTGAAGCTTTTTACATTTTTGATTAAACAAA
TTATAATTGAATGTTTGTCTTAGAAAATGTGAAGCAAAAGTAATCCATTAGTATAAAAAGTCCAC
TTATAGTCACACAAGT
Found at i:36844 original size:154 final size:154
Alignment explanation
Indices: 36564--36866 Score: 369
Period size: 154 Copynumber: 2.0 Consensus size: 154
36554 CTTATTAATC
* * * * **
36564 ACTTTAAACGGTTTTGTAATCTGATAATTGATTTTAAGTTGAAGCTTTTTACATTTTTGGTTAAA
1 ACTTTAAACGGTTTTATAATCTCATAATTCATTTTAAGTTGAAGCTTTTTACATTTCTCATTAAA
*
36629 CAAATTATAATTGAATGTCTACCTCATGAAATATGAAGAAAAAGCCATTCATTGGCAAGAAAAGT
66 CAAATTATAATTGAATGTCTACCTCAGGAAATATGAAGAAAAAGCCATTCATTGGCAAGAAAAGT
36694 CCATATATAGTCACCCATTTTGAA
131 CCATATATAGTCACCCATTTTGAA
* * ** **
36718 ACTTTAAATGGTTTTATAATTTCATAATTCATTTTAAGTTGAATTTTTTTGTATTTCTCATTAAA
1 ACTTTAAACGGTTTTATAATCTCATAATTCATTTTAAGTTGAAGCTTTTTACATTTCTCATT-AA
* ** * *
36783 ACAGATTATAATTGAATGTCTAGTTTC-GGAAATGTGAAGAGAAAGCCA-TCATT-GCTAAGAAA
65 ACAAATTATAATTGAATGTCTA-CCTCAGGAAATATGAAGAAAAAGCCATTCATTGGC-AAGAAA
* * *
36845 AGTTCATTTATAGTCATCCATT
128 AGTCCATATATAGTCACCCATT
36867 CCTTCAAAAG
Statistics
Matches: 125, Mismatches: 21, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
153 2 0.02
154 80 0.64
155 41 0.33
156 2 0.02
ACGTcount: A:0.35, C:0.12, G:0.14, T:0.39
Consensus pattern (154 bp):
ACTTTAAACGGTTTTATAATCTCATAATTCATTTTAAGTTGAAGCTTTTTACATTTCTCATTAAA
CAAATTATAATTGAATGTCTACCTCAGGAAATATGAAGAAAAAGCCATTCATTGGCAAGAAAAGT
CCATATATAGTCACCCATTTTGAA
Found at i:38325 original size:171 final size:171
Alignment explanation
Indices: 37960--38327 Score: 366
Period size: 171 Copynumber: 2.2 Consensus size: 171
37950 AAATGTGAAA
** * * * *
37960 AAAAAATCATTCATTGGCAAGAAAAGTCAATTTATAGTTACACATTCCTTCAAAAGCCTTATTGC
1 AAAAAATCATTCATTAACAAGAAAAGTCAATTTATAATCACACATACCTTCAAAAGCCTTATTAC
* * * * * * *
38025 TCGCTTTAAATGTATTTATATTCTCATAATTGATTTTAAGTTGAATTTTTTAATATTTTTGGTTC
66 ACGCTTCAAATGTATTTACAATCTCATAATTGATTTTAAGTTGAATTTTTTAACATTTTTGATTA
* * * * *
38090 AAACAGATTCTAATTGAATGTCTACCTTGGGAAATGTAAAG
131 AAACAGATGCTAAATGAATGTCTACCTCGAGAAACGTAAAG
** * * * * *
38131 AAAAGGTTATTTATTAACAAGAAATGTCCATTTATAATCACCCATACCTTCGAAAA-CCTTATTA
1 AAAAAATCATTCATTAACAAGAAAAGTCAATTTATAATCACACATACCTTC-AAAAGCCTTATTA
* * *
38195 CACGCTTCAAATGGT-TTTGCAATCTCATAATTGATTTTAAGTTGAATTTTTTTACATTTTTTAT
65 CACGCTTCAAAT-GTATTTACAATCTCATAATTGATTTTAAGTTGAATTTTTTAACATTTTTGAT
* * * *
38259 TAAAACGGAATGC-AAATGAATGAT-TGCCTCGAGAAACGTGATG
129 TAAAACAG-ATGCTAAATGAATG-TCTACCTCGAGAAACGTAAAG
**
38302 AAAAAATCATTCATTCCCAAGAAAAG
1 AAAAAATCATTCATTAACAAGAAAAG
38328 CCTATTTTTT
Statistics
Matches: 154, Mismatches: 39, Indels: 8
0.77 0.19 0.04
Matches are distributed among these distances:
171 144 0.94
172 10 0.06
ACGTcount: A:0.36, C:0.14, G:0.13, T:0.37
Consensus pattern (171 bp):
AAAAAATCATTCATTAACAAGAAAAGTCAATTTATAATCACACATACCTTCAAAAGCCTTATTAC
ACGCTTCAAATGTATTTACAATCTCATAATTGATTTTAAGTTGAATTTTTTAACATTTTTGATTA
AAACAGATGCTAAATGAATGTCTACCTCGAGAAACGTAAAG
Found at i:39321 original size:171 final size:170
Alignment explanation
Indices: 38761--39808 Score: 959
Period size: 171 Copynumber: 6.1 Consensus size: 170
38751 GCGTGTAGGA
* * *
38761 AAATAGTTTTGTAATCGCATAATTAATTTTAAGTTAAA-TTTTTTACATTTTTAGTTAAAACAGA
1 AAATAGTTTTGTAATCTCATAATTGATTTTAAGTTAAATTTTTTTACATTTTTTGTTAAAACAGA
* ** * *
38825 TTATAATTGAATGCTTGTCTCAAGAAACATGAAGAAAAAACCATTCATTGGCAAGAAAAGTT-AT
66 TTATAATTGAATGTTTGTCTTGAGAAAC-TGAAGAAAAAGCCATTCATTAGCAAGAAAAGTTCAT
* * *
38889 TTATAGTCACCCATTCCTTCAAAAGCCTTGTTGCTCACTTT
130 TTATAGTCACCAATTCCTTCAAAAGCCTTATTACTCACTTT
* * * * *
38930 AAATGGTTTTATAATCTCATAATTCATTTTAAGTTGAATTTTTTTACATTTTTTGTTAAAACATA
1 AAATAGTTTTGTAATCTCATAATTGATTTTAAGTTAAATTTTTTTACATTTTTTGTTAAAACAGA
* * * * * * *
38995 TTATAATTCAATATCTGCCTTGAGAAATGTGAAGAAAAGGCCA-TCATT-GCCAAGAAAAGTTTA
66 TTATAATTGAATGTTTGTCTTGAGAAA-CTGAAGAAAAAGCCATTCATTAG-CAAGAAAAGTTCA
** *
39058 TTTATAGTTGCCCATT-CTTACAAAAGCCTTATTACTCACTTT
129 TTTATAGTCACCAATTCCTT-CAAAAGCCTTATTACTCACTTT
* * * * * ** *
39100 AAATGGTGTTGTAATCTCATAGTTGATTTTAAATTAAAATTTCATACATTTTTTGTGAAAACAGA
1 AAATAGTTTTGTAATCTCATAATTGATTTTAAGTTAAATTTTTTTACATTTTTTGTTAAAACAGA
* * * * *
39165 TTATAATTGAATGTTTATTTTGGGAAACTAGAAGAAAAAGCCATTTACTAGCAAGAAAAGTTCAT
66 TTATAATTGAATGTTTGTCTTGAGAAACT-GAAGAAAAAGCCATTCATTAGCAAGAAAAGTTCAT
* *
39230 TTATTGTCACCAATTCCTTCAAAAGCCTTATTACGCACTTT
130 TTATAGTCACCAATTCCTTCAAAAGCCTTATTACTCACTTT
* * * * ** * ** * *
39271 AAATAGTTTTATAATTTTATAATT-ATTTTTAAGTTGAATTGCTTTACATTTCTAATTAAAATAT
1 AAATAGTTTTGTAATCTCATAATTGA-TTTTAAGTTAAATTTTTTTACATTTTTTGTTAAAACAG
* * * * ** * * *
39335 ATTATAATTAAATCTTTGTCTTGGGAAACGTGAAGCAAAAGTAATCCATTAGTATA-AAAAGTCC
65 ATTATAATTGAATGTTTGTCTTGAGAAAC-TGAAGAAAAAGCCATTCATTAGCA-AGAAAAGTTC
* * * * ** *
39399 ACTTACAGTCAGGCAA-GCCTTTGAAAGCCTTATTACTCGCTTT
128 ATTTATAGTCA-CCAATTCCTTCAAAAGCCTTATTACTCACTTT
* * * * * *
39442 AAATGGTTTTGTAATCTCATAATTGATTTTAAGTTTGATTTTTTTTATATTTTTGGTTAAAACAT
1 AAATAGTTTTGTAATCTCATAATTGATTTTAAG-TTAAATTTTTTTACATTTTTTGTTAAAACAG
* * ** * * * * *
39507 ATTATAATTGACTGTTTGCCTCAAAAAATGTGAAAAAAAAGGCATTCATT-GACAAGAAAAGTCC
65 ATTATAATTGAATGTTTGTCTTGAGAAA-CTGAAGAAAAAGCCATTCATTAG-CAAGAAAAGTTC
* * * * *
39571 ATTTATAGTCGCCTATTCCCTCAGAAGCCTTATTAATCACTTT
128 ATTTATAGTCACCAATTCCTTCAAAAGCCTTATTACTCACTTT
* *
39614 AAATAGTTTTGTAATCTGATAATTGATTTTAAGTTAAATTTTTTTACATTTTTTGTTAAAATAGA
1 AAATAGTTTTGTAATCTCATAATTGATTTTAAGTTAAATTTTTTTACATTTTTTGTTAAAACAGA
* * ** * * *
39679 TTATAATT-AACTGCTTGCCTCAAGAAACGTGTAGAAAAAGCCATTCATTGGTAAGAAAAG-TCT
66 TTATAATTGAA-TGTTTGTCTTGAGAAAC-TGAAGAAAAAGCCATTCATTAGCAAGAAAAGTTC-
* * *
39742 ATTTATAGTCACTC-ATTCCTTTAAAAGCTTTATTACTCGCTTT
128 ATTTATAGTCAC-CAATTCCTTCAAAAGCCTTATTACTCACTTT
*
39785 AAATAGTTTTATAATCTCATAATT
1 AAATAGTTTTGTAATCTCATAATT
39809 AATTNNNNNN
Statistics
Matches: 701, Mismatches: 154, Indels: 46
0.78 0.17 0.05
Matches are distributed among these distances:
168 1 0.00
169 53 0.08
170 180 0.26
171 329 0.47
172 138 0.20
ACGTcount: A:0.35, C:0.13, G:0.12, T:0.40
Consensus pattern (170 bp):
AAATAGTTTTGTAATCTCATAATTGATTTTAAGTTAAATTTTTTTACATTTTTTGTTAAAACAGA
TTATAATTGAATGTTTGTCTTGAGAAACTGAAGAAAAAGCCATTCATTAGCAAGAAAAGTTCATT
TATAGTCACCAATTCCTTCAAAAGCCTTATTACTCACTTT
Found at i:39617 original size:343 final size:336
Alignment explanation
Indices: 38761--39808 Score: 1068
Period size: 343 Copynumber: 3.1 Consensus size: 336
38751 GCGTGTAGGA
* *
38761 AAATAGTTTTGTAATCGCATAATTAATTTTAAGTTAAATTTTTTACATTTTTAGTTAAAACAGAT
1 AAATAGTTTTGTAATCTCATAATTGATTTTAAGTTAAATTTTTTACATTTTTAGTTAAAACAGAT
* * *
38826 TATAATTGAATGCTTGTCTCAAGAAACA-TGAAGAAAAAA-CCATTCATTGGCAAGAAAAGTTAT
66 TATAATTGAATGTTTGTCTCAA-AAA-ATTGAA-AAAAAAGCCATTCATTGACAAGAAAAGTCAT
* * * *
38889 TTATAGTCACCCATTCCTTCAAAAGCCTTGTTGCTCACTTTAAATGGTTTTATAATCTCATAATT
128 TTATAGTCACCAATTCCTTCAAAAGCCTTATTACTCACTTTAAATAGTTTTATAATCTCATAATT
* * * *
38954 CATTTTAAGTTGAATTTTTTTACATTTTTTGTTAAAACATATTATAATTCAATATCTGCCTTGAG
193 CATTTTAAGTTGAATTTTTTTACATTTTTTGTTAAAATATATTATAATTAAATCTTTGCCTTGAG
* * * * * * *
39019 AAATGTGAAGAAAAGGCCATCATTGCCAAGAAAAGTTTATTTATAGT-TGCCCATTCTTACAAAA
258 AAACGTGAAGAAAA-GCCATCATTG-TAAGAAAAGTCTATTTATAGTCAGCCAATCCTT-TAAAA
*
39083 GCCTTATTACTCACTTT
320 GCCTTATTACTCGCTTT
* * * * ** * *
39100 AAATGGTGTTGTAATCTCATAGTTGATTTTAAATTAAAATTTCATACATTTTTTGTGAAAACAGA
1 AAATAGTTTTGTAATCTCATAATTGATTTTAAGTT-AAATTTTTTACATTTTTAGTTAAAACAGA
* * *** * * * * *
39165 TTATAATTGAATGTTTATTTTGGGAAACTAGAAGAAAAAGCCATTTACT-AGCAAGAAAAGTTCA
65 TTATAATTGAATGTTT-GTCTCAAAAAATTGAAAAAAAAGCCATTCATTGA-CAAGAAAAG-TCA
* * * *
39229 TTTATTGTCACCAATTCCTTCAAAAGCCTTATTACGCACTTTAAATAGTTTTATAATTTTATAAT
127 TTTATAGTCACCAATTCCTTCAAAAGCCTTATTACTCACTTTAAATAGTTTTATAATCTCATAAT
** * ** *
39294 T-ATTTTTAAGTTGAATTGCTTTACATTTCTAATTAAAATATATTATAATTAAATCTTTGTCTTG
192 TCA-TTTTAAGTTGAATTTTTTTACATTTTTTGTTAAAATATATTATAATTAAATCTTTGCCTTG
* ** * * * * * *
39358 GGAAACGTGAAGCAAAAGTAATCCATTAGTATA-AAAAGTCCACTTACAGTCAGGCAAGCCTTTG
256 AGAAACGTGAAG-AAAAGCCAT-CATT-GTA-AGAAAAGTCTATTTATAGTCAGCCAATCCTTTA
39422 AAAGCCTTATTACTCGCTTT
317 AAAGCCTTATTACTCGCTTT
* ** * * *
39442 AAATGGTTTTGTAATCTCATAATTGATTTTAAGTTTGATTTTTTTTATATTTTTGGTTAAAACAT
1 AAATAGTTTTGTAATCTCATAATTGATTTTAAG-TT-AAATTTTTTACATTTTTAGTTAAAACAG
* * *
39507 ATTATAATTGACTGTTTGCCTCAAAAAATGTGAAAAAAAAGGCATTCATTGACAAGAAAAGTCCA
64 ATTATAATTGAATGTTTGTCTCAAAAAAT-TGAAAAAAAAGCCATTCATTGACAAGAAAAGT-CA
* * * * * * *
39572 TTTATAGTCGCCTATTCCCTCAGAAGCCTTATTAATCACTTTAAATAGTTTTGTAATCTGATAAT
127 TTTATAGTCACCAATTCCTTCAAAAGCCTTATTACTCACTTTAAATAGTTTTATAATCTCATAAT
* * * * **
39637 TGATTTTAAGTTAAATTTTTTTACATTTTTTGTTAAAATAGATTATAATTAACTGC-TTGCCTCA
192 TCATTTTAAGTTGAATTTTTTTACATTTTTTGTTAAAATATATTATAATTAAAT-CTTTGCCTTG
* *
39701 AGAAACGTGTAGAAAAAGCCATTCATTGGTAAGAAAAGTCTATTTATAGTCA-CTCATTCCTTTA
256 AGAAACGTGAAG-AAAAGCCA-TCATT-GTAAGAAAAGTCTATTTATAGTCAGC-CAATCCTTTA
*
39765 AAAGCTTTATTACTCGCTTT
317 AAAGCCTTATTACTCGCTTT
*
39785 AAATAGTTTTATAATCTCATAATT
1 AAATAGTTTTGTAATCTCATAATT
39809 AATTNNNNNN
Statistics
Matches: 568, Mismatches: 120, Indels: 38
0.78 0.17 0.05
Matches are distributed among these distances:
339 34 0.06
340 63 0.11
341 126 0.22
342 78 0.14
343 263 0.46
344 4 0.01
ACGTcount: A:0.35, C:0.13, G:0.12, T:0.40
Consensus pattern (336 bp):
AAATAGTTTTGTAATCTCATAATTGATTTTAAGTTAAATTTTTTACATTTTTAGTTAAAACAGAT
TATAATTGAATGTTTGTCTCAAAAAATTGAAAAAAAAGCCATTCATTGACAAGAAAAGTCATTTA
TAGTCACCAATTCCTTCAAAAGCCTTATTACTCACTTTAAATAGTTTTATAATCTCATAATTCAT
TTTAAGTTGAATTTTTTTACATTTTTTGTTAAAATATATTATAATTAAATCTTTGCCTTGAGAAA
CGTGAAGAAAAGCCATCATTGTAAGAAAAGTCTATTTATAGTCAGCCAATCCTTTAAAAGCCTTA
TTACTCGCTTT
Found at i:41168 original size:169 final size:171
Alignment explanation
Indices: 40889--41860 Score: 694
Period size: 171 Copynumber: 5.7 Consensus size: 171
40879 NNNNNNNTTT
* * * ** *
40889 GGAAACGTGAGGAAAAACCCATTCATTGATAAGATAAGTCCATTTATAGTCA-CTAATGCCTTCA
1 GGAAACATGAAGAAAAAGCCATTCATTGGCAAGAAAAGTCCATTTATAGTCACCT-ATGCCTTCA
*
40953 AAAG-CTTATTACTCACTTTAAATGG-ATATACCA-CTTCATAATTGATTTTAGGTTGAATTTTT
65 AAAGCCTTATTACTCACTTTAAATGGTTTATA--ATC-TCATAATTGATTTTAGGTTGAATTTTT
*
41015 TTATATTTTTTATTAAAA-ATAATATAATTGAATGTTTACCCT-A
127 TTATATTTTTTATTAAAACATAATATAATTGAATATTTACCCTCA
* * * **
41058 GGAAACGTGTAGAAAAAGCCTTTCATTGGCAAGAAAAGTCCATTTATAGTCA-CTATTTTCTTCA
1 GGAAACATGAAGAAAAAGCCATTCATTGGCAAGAAAAGTCCATTTATAGTCACCTA-TGCCTTCA
* *
41122 AAAGCCTTATTATTCACTTTAAATGGTTTATAAACTCATAATTGATTTTAGGTTGAA-TTTTTTA
65 AAAGCCTTATTACTCACTTTAAATGGTTTATAATCTCATAATTGATTTTAGGTTGAATTTTTTTA
* **********
41186 TATTTTTTATTAAAACAGAATATANNNNNNNNNNTA-CCTCA
130 TATTTTTTATTAAAACATAATATAATTGAATATTTACCCTCA
* * * ** * * * **
41227 AGAAACGTGAAG-AAAA-TCATTCATTGGCAAGAAAAACCCATTTATAGTGATCTAAGCCTTTGA
1 GGAAACATGAAGAAAAAGCCATTCATTGGCAAGAAAAGTCCATTTATAGTCACCTATGCCTTCAA
* * * * * *
41290 AAGCATTATTGCTCACTTTTAATGGTTTTATAATCTCATAATTGATTTTAAGTTAAAATGTTTTT
66 AAGCCTTATTACTCACTTTAAATGG-TTTATAATCTCATAATTGATTTTAGGTT-GAATTTTTTT
* * * * * *
41355 ATATTTTTGATTAAAATATATTATAATTGAATATCTGCCTTCA
129 ATATTTTTTATTAAAACATAATATAATTGAATATTTACCCTCA
* * * * * * * * *
41398 -GAAATATAAAGCAAAAGCCATCCATTGGCATA-AAATGTCTATTTATAATTA-CTCAAGCCTTC
1 GGAAACATGAAGAAAAAGCCATTCATTGGCA-AGAAAAGTCCATTTATAGTCACCT-ATGCCTTC
* * * * * *
41460 GAAAGACTTCTTACTCACTTTAAATGATTTTATAATCTCATAATTGATTTTATGTT-AAATTTTT
64 AAAAGCCTTATTACTCACTTTAAATG-GTTTATAATCTCATAATTGATTTTAGGTTGAATTTTTT
* * * * * *
41524 TACATTTTTGT-TTAAAACA-AATTATAATTGACTGTTTGCCTTGA
128 TATATTTTT-TATTAAAACATAA-TATAATTGAATATTTACCCTCA
** ** * * * * **
41568 CAAAACATGAAGGTAAATCCATTCATTGGCAAGAAAAGTACATTTATGGTCACCCATGTTTTCAA
1 GGAAACATGAAGAAAAAGCCATTCATTGGCAAGAAAAGTCCATTTATAGTCACCTATGCCTTCAA
********* * *
41633 AAGCCTTATTACT-AGCTNNNNNNNNNNTTATAATCTTATAATTGATTTTAGCTTGAATTTTTTT
66 AAGCCTTATTACTCA-CT-TTAAATGGTTTATAATCTCATAATTGATTTTAGGTTGAATTTTTTT
* * * *
41697 ACA-TTTTTACTTAAAATAT-ATAATAATTAAATATTTA-CCT-T
129 ATATTTTTTA-TTAAAACATAAT-ATAATTGAATATTTACCCTCA
* ** * * *
41738 GGAAAACATGGAGAAAAATTCATTCATTGTCAAGAAAAGTCCTTTTACAGTCACCTATGCCTTCA
1 GG-AAACATGAAGAAAAAGCCATTCATTGGCAAGAAAAGTCCATTTATAGTCACCTATGCCTTCA
* *
41803 ACAA-CCTTATTACTCGCTTTAAATAGTTTTATAATCTCATAATTGATTTTAGGTTGAA
65 A-AAGCCTTATTACTCACTTTAAAT-GGTTTATAATCTCATAATTGATTTTAGGTTGAA
41861 NNNNNNNNNN
Statistics
Matches: 618, Mismatches: 153, Indels: 62
0.74 0.18 0.07
Matches are distributed among these distances:
167 54 0.09
168 59 0.10
169 103 0.17
170 98 0.16
171 191 0.31
172 112 0.18
173 1 0.00
ACGTcount: A:0.35, C:0.13, G:0.11, T:0.38
Consensus pattern (171 bp):
GGAAACATGAAGAAAAAGCCATTCATTGGCAAGAAAAGTCCATTTATAGTCACCTATGCCTTCAA
AAGCCTTATTACTCACTTTAAATGGTTTATAATCTCATAATTGATTTTAGGTTGAATTTTTTTAT
ATTTTTTATTAAAACATAATATAATTGAATATTTACCCTCA
Found at i:42797 original size:171 final size:166
Alignment explanation
Indices: 42483--43124 Score: 542
Period size: 171 Copynumber: 3.8 Consensus size: 166
42473 ATGAATGCCT
* * * * * * * *
42483 TTTTCTTCACGTTTTTCAGGGTAAATAATCGATTAAAATCTGTTTTAACTAGAAATAT-AAAAAA
1 TTTTCTTCACGTTTTCCAAGGCAAACATTCAATTATAATC-GTTTTAA-T-GAAA-ATGTAAAAA
* * *
42547 ATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCGAAAG
62 ATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTTTTGAAGG
* ** * * * *
42612 -CTTCCATAACTATAAGTGGACTTTTTATGCTAATGGATTAC
127 AATT-GGTGACTATAAATGAACTTTTTATGC-AATGGATGAC
* * * * *
42653 TTTTGCTTCACGTTTTCCAAGGTAAACATTCAATTATAATACATTTTAATTAGGAATGTAAAGCA
1 TTTT-CTTCACGTTTTCCAAGGCAAACATTCAATTATAAT-CGTTTTAATGA-AAATGTAAA-AA
* * * *
42718 ATTCAACTTAAAATCAATTATGAGGTTACAAAACCATTTAATGTGAGTAATAAGGCTTTTTAAGG
62 ATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTTTTGAAGG
* * **
42783 AATTGGTGACTATAAATGAACTTTTCT-TGCCAGTGAATGGGT
127 AATTGGTGACTATAAATGAACTTTT-TATG-CAATGGAT-GAC
* * * * *
42825 TTTTATTCACGTTTCCCAAGGCAAACATTCAATTATAATTTGTTTTCATGAAAAATGCAAAAAAT
1 TTTTCTTCACGTTTTCCAAGGCAAACATTCAATTATAA-TCGTTTTAATG-AAAATGTAAAAAA-
* * * * * * *
42890 TTCAAATTAAAA-CTAATTATGAGATTAGAACACCATTAAAAGTGAGCAACAAGGCTTTAGAAGG
63 TTCAACTTAAAATC-AATTATGAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTTTTGAAGG
* * *
42954 AATGGGTGACTATAAATGAACTTGTCTCA-GCAAT-GATGGCC
127 AATTGGTGACTATAAATGAACTT-T-TTATGCAATGGAT-GAC
* * * *
42995 TTTTCTTCGC-ATTTCTCAAGCCAAACATTCAATTATGATCTGTTTTAATGAAACATGTAAAAAA
1 TTTTCTTCACGTTTTC-CAAGGCAAACATTCAATTATAATC-GTTTTAATGAAA-ATGT-AAAAA
* * *
43059 ATTCAACTGAAAATGAATTATGAGATTATAAAACCATTTAAGGTGAGTAATAAGGCTTTTGAAGG
62 ATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTTTTGAAGG
43124 A
127 A
43125 NNNNNNNNNN
Statistics
Matches: 377, Mismatches: 74, Indels: 42
0.76 0.15 0.09
Matches are distributed among these distances:
169 10 0.03
170 109 0.29
171 244 0.65
172 13 0.03
173 1 0.00
ACGTcount: A:0.38, C:0.13, G:0.15, T:0.34
Consensus pattern (166 bp):
TTTTCTTCACGTTTTCCAAGGCAAACATTCAATTATAATCGTTTTAATGAAAATGTAAAAAATTC
AACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTTTTGAAGGAATT
GGTGACTATAAATGAACTTTTTATGCAATGGATGAC
Found at i:43806 original size:171 final size:170
Alignment explanation
Indices: 43460--44216 Score: 663
Period size: 171 Copynumber: 4.4 Consensus size: 170
43450 AACTAGACAG
*
43460 TCAATTATAATCTGTTTTAACT-AAAAATATAAAAAA-ATCTAACTTAAAATCAATTATGAGATT
1 TCAATTATAATCTGTTTTAA-TAAAAAATATAAAAAATTTC-AACTTAAAATCAATTATGAGATT
* * * ** ** * * * *
43523 ATAAAGTCATTTAAAGCGAGTAATAAGGCTTCCGAAGGCTTGTGTGACTATAAGTGGACTTTT-T
64 ACAAAATCATTTAAAGTGAGTAATAAGGCTTTTGAAGGAATGAGTGACAATAAATGAACTTTTCT
** * ** * * *** ** *
43587 ACACTAATGGATTACTTTTGCTTCACGTTTCTTGAGATAAATAT
129 -TGCTAAT-AATGGCTTTTTCTTCAAGTTTCCCAAGGCAAACAT
* * * *
43631 TCAATTATAA-CATATTTTAATAAAAAATGTAAAGCAA-TTCAACTTAAAATCGATTATGAGATT
1 TCAATTATAATC-TGTTTTAATAAAAAATATAAA-AAATTTCAACTTAAAATCAATTATGAGATT
* * *
43694 ACAAAATCATTTAAAGTGCGTAATAAGTCTTTTGAAGGAATTG-GTGACAATAAATGAACTATTC
64 ACAAAATCATTTAAAGTGAGTAATAAGGCTTTTGAAGGAA-TGAGTGACAATAAATGAACTTTTC
* * *
43758 TTGCTAGTAAACGTCTTTTTCTTCAAGTTTCCCAAGGCAAACAT
128 TTGCTAAT-AATGGCTTTTTCTTCAAGTTTCCCAAGGCAAACAT
* * * * *
43802 TCAATTATAATCTGTTTTCATGAAAAATACAAAAAATTTCAACTTAAAATCAATTATAAAATTAC
1 TCAATTATAATCTGTTTTAATAAAAAATATAAAAAATTTCAACTTAAAATCAATTATGAGATTAC
* * * *
43867 AACACCATTTGAAGTGAGTAATAAGGCTTTTGAAGGAATGAGTGA-ATATAAATGAATTTTTCTT
66 AAAATCATTTAAAGTGAGTAATAAGGCTTTTGAAGGAATGAGTGACA-ATAAATGAACTTTTCTT
* * * * * * * * *
43931 GGTAATGATGGCCTCTACTTCATATTTTCCGAA-GCAGATAT
130 GCTAATAATGGCTTTTTCTTCA-AGTTTCCCAAGGCAAACAT
* * * * * *
43972 TGAATTATAATATGTTTTAATGAAAAATGTAAAAAATTTCAACCT-AAATAGAATTATGAGATTA
1 TCAATTATAATCTGTTTTAATAAAAAATATAAAAAATTTCAACTTAAAAT-CAATTATGAGATTA
* * * *
44036 TAAAATCATTTAAAATGAGTAATAAGGCTTTTGAAGGAATGAGTGACTATAAATGGACTTTTCTT
65 CAAAATCATTTAAAGTGAGTAATAAGGCTTTTGAAGGAATGAGTGACAATAAATGAACTTTTCTT
* * * * ** *
44101 GCCAATGAATGGCTTTTTCTTCACGTTTCTCGAGATAAGCAT
130 GCTAAT-AATGGCTTTTTCTTCAAGTTTCCCAAGGCAAACAT
* *
44143 TCAATTGTAATCTGTTTTAACAAAAAATATAAAAAA-TTCAA-TTCAAAATCAATTATGAGATTA
1 TCAATTATAATCTGTTTTAATAAAAAATATAAAAAATTTCAACTT-AAAATCAATTATGAGATTA
*
44206 CAAAATTATTT
65 CAAAATCATTT
44217 TGTTGCACGT
Statistics
Matches: 465, Mismatches: 105, Indels: 33
0.77 0.17 0.05
Matches are distributed among these distances:
169 5 0.01
170 165 0.35
171 287 0.62
172 8 0.02
ACGTcount: A:0.40, C:0.12, G:0.13, T:0.35
Consensus pattern (170 bp):
TCAATTATAATCTGTTTTAATAAAAAATATAAAAAATTTCAACTTAAAATCAATTATGAGATTAC
AAAATCATTTAAAGTGAGTAATAAGGCTTTTGAAGGAATGAGTGACAATAAATGAACTTTTCTTG
CTAATAATGGCTTTTTCTTCAAGTTTCCCAAGGCAAACAT
Found at i:44057 original size:170 final size:171
Alignment explanation
Indices: 43625--44216 Score: 529
Period size: 170 Copynumber: 3.5 Consensus size: 171
43615 TTCTTGAGAT
* * * * *
43625 AAATATTCAATTATAACATATTTTAATAAAAAATGTAAAGCAA-TTCAACTTAAAATCG-ATTAT
1 AAATATTCAATTATAATATGTTTTAATGAAAAATGTAAA-AAATTTCAACTT-AAATAGAATTAT
* *
43688 GAGATTACAAAATCATTTAAAGTGCGTAATAAGTCTTTTGAAGGAATTG-GTGACA-ATAAATGA
64 GAGATTACAAAATCATTTAAAGTGAGTAATAAGGCTTTTGAAGGAA-TGAGTGA-ATATAAATGA
* * * * * *
43751 ACTATTCTTGCTAGTAAACGTCTTTTTCTTCAAGTTTCCCAAGGC
127 ACTTTTCTTGCTAATAAACGGCCTCTACTTCAAGTTTCCCAAGGC
* * * ** * *
43796 AAACATTCAATTATAATCTGTTTTCATGAAAAATACAAAAAATTTCAACTTAAA-ATCAATTATA
1 AAATATTCAATTATAATATGTTTTAATGAAAAATGTAAAAAATTTCAACTTAAATA-GAATTATG
* * * * *
43860 AAATTACAACACCATTTGAAGTGAGTAATAAGGCTTTTGAAGGAATGAGTGAATATAAATGAATT
65 AGATTACAAAATCATTTAAAGTGAGTAATAAGGCTTTTGAAGGAATGAGTGAATATAAATGAACT
* * * * *
43925 TTTCTTGGTAAT-GATGGCCTCTACTTCATATTTTCCGAA-GC
130 TTTCTTGCTAATAAACGGCCTCTACTTCA-AGTTTCCCAAGGC
* * *
43966 AGATATTGAATTATAATATGTTTTAATGAAAAATGTAAAAAATTTCAACCTAAATAGAATTATGA
1 AAATATTCAATTATAATATGTTTTAATGAAAAATGTAAAAAATTTCAACTTAAATAGAATTATGA
* * * *
44031 GATTATAAAATCATTTAAAATGAGTAATAAGGCTTTTGAAGGAATGAGTGACTATAAATGGACTT
66 GATTACAAAATCATTTAAAGTGAGTAATAAGGCTTTTGAAGGAATGAGTGAATATAAATGAACTT
* * * * * * * * * **
44096 TTCTTGCCAATGAATGGCTTTTTCTTCACGTTTCTCGAGAT
131 TTCTTGCTAATAAACGGCCTCTACTTCAAGTTTCCCAAGGC
** * * ** * *
44137 AAGCATTCAATTGTAATCTGTTTTAACAAAAAATATAAAAAA-TTCAA-TTCAAA-ATCAATTAT
1 AAATATTCAATTATAATATGTTTTAATGAAAAATGTAAAAAATTTCAACTT-AAATA-GAATTAT
*
44199 GAGATTACAAAATTATTT
64 GAGATTACAAAATCATTT
44217 TGTTGCACGT
Statistics
Matches: 335, Mismatches: 75, Indels: 23
0.77 0.17 0.05
Matches are distributed among these distances:
169 2 0.01
170 173 0.52
171 160 0.48
ACGTcount: A:0.41, C:0.11, G:0.13, T:0.35
Consensus pattern (171 bp):
AAATATTCAATTATAATATGTTTTAATGAAAAATGTAAAAAATTTCAACTTAAATAGAATTATGA
GATTACAAAATCATTTAAAGTGAGTAATAAGGCTTTTGAAGGAATGAGTGAATATAAATGAACTT
TTCTTGCTAATAAACGGCCTCTACTTCAAGTTTCCCAAGGC
Found at i:44532 original size:170 final size:168
Alignment explanation
Indices: 44281--44868 Score: 492
Period size: 170 Copynumber: 3.5 Consensus size: 168
44271 GTAAAACAAT
* * * * * *
44281 ATCAATTATGTGATTATAAGACCATTTAAAGCAAGTAATAAAGCTTTCAAAGGCTTGAGTGAATA
1 ATCAATTATGAGATTATAAAACCATTTAAAGCAAGTAATAAGGCTTTCGAAGGCATG-GTGACTA
* * *
44346 AAAATGAGCTTTTCTTGACAATGAATGATTTTTTCTTTGCGTTTCTCAAGGCAATCATTCAATT-
65 TAAATGGGCTTTTCTTGACAATGAATGATTTTTTCTTTACGTTTCTCAAGGCAA-CATTCAATTA
* * * *
44410 GCATCCGCTTTAATAAAAAATA-TAAAAGAATTCAAAC-TCAA
129 GAATACGCTTTAA-AAAAAATATTAAAA-AAATC-AACTTAAA
** **
44451 ATCAATTATGAGATTGCAAAACCATTTAAAGCGCGTAATAAGGCTTTCGAAGGCATGGTTGACTA
1 ATCAATTATGAGATTATAAAACCATTTAAAGCAAGTAATAAGGCTTTCGAAGGCATGG-TGACTA
* * * * * * *
44516 TAAATGGGCATTTCTTGACAATG-ATAACTTTTTCTTTACATTTCCCAAGGTAGACTTTCAATTA
65 TAAATGGGCTTTTCTTGACAATGAATGATTTTTTCTTTACGTTTCTCAAGGCA-ACATTCAATTA
* * **
44580 GAATATGTTTTAACCAAAATATTAAAAAAATCAACTTAAA
129 GAATACGCTTTAAAAAAAATATTAAAAAAATCAACTTAAA
* * * * *
44620 ATTAATTATGAGAATATAAATCCATTTAAAGCAAATAATAAGGCTTTTGAAGG-AGTGGGTGACT
1 ATCAATTATGAGATTATAAAACCATTTAAAGCAAGTAATAAGGCTTTCGAAGGCA-T-GGTGACT
* * *
44684 ATAAATAGACTTTTCTT-ACCAATGAATGATTTTTTCTTCACGTTTCTCAAGGCAAACATTCAAT
64 ATAAATGGGCTTTTCTTGA-CAATGAATGATTTTTTCTTTACGTTTCTCAAGGC-AACATTCAAT
* ** * * * * *
44748 TATAAT-CTATCTAACTAAAAAT-GTAGAAAAATTGAACTTAAA
127 TAGAATACGCTTTAA-AAAAAATATTA-AAAAAATCAACTTAAA
* * * ** * * *
44790 ATCAATTATCAGGTTACAAAACCATTTAAAGTGATTAATAAGGC-TTCTAAAGGGATGGATGACT
1 ATCAATTATGAGATTATAAAACCATTTAAAGCAAGTAATAAGGCTTTC-GAAGGCATGG-TGACT
* *
44854 ATAAGTGGACTTTTC
64 ATAAATGGGCTTTTC
44869 ATCCCTATGA
Statistics
Matches: 333, Mismatches: 70, Indels: 30
0.77 0.16 0.07
Matches are distributed among these distances:
168 5 0.02
169 124 0.37
170 202 0.61
171 2 0.01
ACGTcount: A:0.39, C:0.14, G:0.14, T:0.33
Consensus pattern (168 bp):
ATCAATTATGAGATTATAAAACCATTTAAAGCAAGTAATAAGGCTTTCGAAGGCATGGTGACTAT
AAATGGGCTTTTCTTGACAATGAATGATTTTTTCTTTACGTTTCTCAAGGCAACATTCAATTAGA
ATACGCTTTAAAAAAAATATTAAAAAAATCAACTTAAA
Found at i:44632 original size:169 final size:169
Alignment explanation
Indices: 44449--45095 Score: 436
Period size: 169 Copynumber: 3.8 Consensus size: 169
44439 ATTCAAACTC
* ** *
44449 AAATCAATTATGAGATTGCAAAACCATTTAAAGCGCGTAATAAGGCTTTCGAAGGCATGGTTGAC
1 AAATCAATTATGAGATTACAAAACCATTTAAAGCGAATAATAAGGCTTTCGAAGG-ATGGATGAC
* * * * * *
44514 TATAAATGGGCATTTCTTGA-CAATG-ATAACTTTTTCTTTACATTTCCCAAGGTAGACTTTCAA
65 TATAAATAGACATTTCTT-ACCAATGAATAACTTTTTCTTCACATTTCCCAAGGCAAACATTCAA
* *
44577 TTAGAATATGTTTTAACCAAAATAT-TA-AAAAAATCAACTTA
129 TTAGAATAT-ATCTAACCAAAA-ATGTAGAAAAAATCAACTTA
* * * * * * *
44618 AAATTAATTATGAGAATATAAATCCATTTAAAGCAAATAATAAGGCTTTTGAAGGAGTGGGTGAC
1 AAATCAATTATGAGATTACAAAACCATTTAAAGCGAATAATAAGGCTTTCGAAGGA-TGGATGAC
* * * * *
44683 TATAAATAGACTTTTCTTACCAATGAATGATTTTTTCTTCACGTTTCTCAAGGCAAACATTCAAT
65 TATAAATAGACATTTCTTACCAATGAATAACTTTTTCTTCACATTTCCCAAGGCAAACATTCAAT
* * * * *
44748 TATAATCTATCTAACTAAAAATGTAGAAAAATTGAACTTA
130 TAGAATATATCTAACCAAAAATGTAGAAAAAATCAACTTA
* * * * *
44788 AAATCAATTATCAGGTTACAAAACCATTTAAAGTGATTAATAAGGC-TTCTAAAGGGATGGATGA
1 AAATCAATTATGAGATTACAAAACCATTTAAAGCGAATAATAAGGCTTTC-GAA-GGATGGATGA
* * * * * * *** * ***** * * *
44852 CTATAAGTGGACTTTTCATCCCTATGAACGTCCTTTT-TTCACATTTTTTGTGGTAAATAATCAA
64 CTATAAATAGACATTTCTTACCAATGAATAACTTTTTCTTCACATTTCCCAAGGCAAACATTCAA
* * * * *
44916 TTATAATCTGAT-TAATCAAAAATATA-AAAATATTTC-ACTTA
129 TTAGAATAT-ATCTAACCAAAAATGTAGAAAA-A-ATCAACTTA
* * * * * *
44957 AAATCAATTATAAGATTATAAAACCATTTAAAGCG-ACAATAAGGCTTTCGAAAGATTGCATAAC
1 AAATCAATTATGAGATTACAAAACCATTTAAAGCGAATAATAAGGCTTTCGAAGGA-TGGATGAC
* * * * * * * * *
45021 TATAAGTTGAC-TTT-TTATGCTAATGGATTACTTTTGCTTCACGTTTCCTAAGGTAAACATTCA
65 TATAAATAGACATTTCTTA--CCAATGAATAACTTTTTCTTCACATTTCCCAAGGCAAACATTCA
*
45084 ATTAAAATATAT
128 ATTAGAATATAT
45096 TTTAATTAGA
Statistics
Matches: 372, Mismatches: 91, Indels: 31
0.75 0.18 0.06
Matches are distributed among these distances:
166 1 0.00
167 5 0.01
168 45 0.12
169 192 0.52
170 126 0.34
171 3 0.01
ACGTcount: A:0.39, C:0.14, G:0.13, T:0.35
Consensus pattern (169 bp):
AAATCAATTATGAGATTACAAAACCATTTAAAGCGAATAATAAGGCTTTCGAAGGATGGATGACT
ATAAATAGACATTTCTTACCAATGAATAACTTTTTCTTCACATTTCCCAAGGCAAACATTCAATT
AGAATATATCTAACCAAAAATGTAGAAAAAATCAACTTA
Found at i:45553 original size:170 final size:169
Alignment explanation
Indices: 45211--45757 Score: 493
Period size: 170 Copynumber: 3.2 Consensus size: 169
45201 NNNNNNNNNN
* * *
45211 TTCAACTTAAAATCAATTATGAGTTTACAAAACCATTTAAAGTGAGTAATAAGGTTTTTTAAGGA
1 TTCAACTTAAAATCAATTATGAGATTACAAAACCATTTAAAGTGAGTAATAAGGCTTTTGAAGGA
* * * * * ** * *
45276 ATTGGAGACTATAAATGAACATTTCTT-GCCAGTGAATGGCTTTTTATTCATGTTTCTCAATGCA
66 ATGGGTGACTATAAATGAACATTTCTTAG-CAATG-ATAGCTCTTTATTCACATTTCCCAAGGCA
*
45340 GACATTCAATTACAATCTATTTTCAAAAAAAAAAAATAAAT
129 GACATTCAATTACAATATATTTTCAAAAAAAAAAAATAAAT
* * * * *
45381 TTCAATTTAAAATTAATTATGAGATTACAACACCATTAAAAGTGAGTAATAAGACTTTTGAAGGA
1 TTCAACTTAAAATCAATTATGAGATTACAAAACCATTTAAAGTGAGTAATAAGGCTTTTGAAGGA
* * *
45446 ATGGGTGACTATAAATGAACCTTTCTTAGCAATGATAGC-CTTTACTTCACATTTCCCGAGGTAG
66 ATGGGTGACTATAAATGAACATTTCTTAGCAATGATAGCTCTTTA-TTCACATTTCCCAAGGCAG
* * * *
45510 ATATTGAATTACAATATGTTTT-AATGAAAAATACAAA-AAAT
130 ACATTCAATTACAATATATTTTCAA--AAAAA-AAAAATAAAT
* * * * * *
45551 TTCAACTTAAAATGAATTATGGGATTATAAAACCATTTAAAGTAAGAAATAAGGCTTTTGAAAGA
1 TTCAACTTAAAATCAATTATGAGATTACAAAACCATTTAAAGTGAGTAATAAGGCTTTTGAAGGA
* * * * * * * * * **
45616 ATGGGTGACTATAAATGGACTTTTCTTACCAATGA-ATGACTTTTTCTTTACGTTTCTCGAGATA
66 ATGGGTGACTATAAATGAACATTTCTTAGCAATGATA-G-CTCTTTATTCACATTTCCCAAGGCA
* * *
45680 -ACCATTCAATTATAATTTGTTTT-AACCAAAAATAAAAA-AAA-
129 GA-CATTCAATTACAATATATTTTCAA--AAAAA-AAAAATAAAT
* *
45721 -TCAACTTAAAATCATTTATGAGATTACAAAACTATTT
1 TTCAACTTAAAATCAATTATGAGATTACAAAACCATTT
45758 TGCTGCACGT
Statistics
Matches: 312, Mismatches: 56, Indels: 19
0.81 0.14 0.05
Matches are distributed among these distances:
168 6 0.02
169 68 0.22
170 183 0.59
171 52 0.17
172 3 0.01
ACGTcount: A:0.41, C:0.12, G:0.13, T:0.35
Consensus pattern (169 bp):
TTCAACTTAAAATCAATTATGAGATTACAAAACCATTTAAAGTGAGTAATAAGGCTTTTGAAGGA
ATGGGTGACTATAAATGAACATTTCTTAGCAATGATAGCTCTTTATTCACATTTCCCAAGGCAGA
CATTCAATTACAATATATTTTCAAAAAAAAAAAATAAAT
Found at i:46554 original size:340 final size:337
Alignment explanation
Indices: 45822--47060 Score: 1113
Period size: 340 Copynumber: 3.6 Consensus size: 337
45812 GTAAAAGAAT
* * * * * * * * * *
45822 ATCAATTATGTGATTATAAGACCATTTAAAGCGAGTAATAAAGCTTTCAAA-TACTTGAGTGAAT
1 ATCAATTATGAGATTACAAAACCATTTAAAGTGAGCAATAAGGCTTTTAAAGGA-ATG-GTGACT
* * * * * *
45886 AAAAATAGG-CTTTTCTTGA-CAATGAATGATTTTTTTTTCACGTTTCTTTAGGCA-ATCATTCA
64 ATAAAT-GGACTTTTCTT-ACCAATGAATG-GTTTTTCTTCACGTTTCCTAAGGTAGA-CATTCA
** * * ** * * * * *
45948 ATTCCATTCCGTTTTAATTAAAAATGTAAAAAAAATCAACTTAAAATCAATTATGAGACTGCAAA
125 ATTATAATCTG-TTTAACAAAAAATGTAAAACAATTCAACTTAAAATCAATTATCAGATTACAAA
* * * *
46013 ACTATTTAAAATGCGTAATAAGGCTTTCGAAGGCATGAATGACTAT-AGATGGA-TATTTCTTG-
189 ACCATTTAAAGTGAGTAATAAGGCTTTCGAAAGCATGAATGACTATAAG-TGGACT-TTTCTTGA
* * * * * * * *
46075 TCAGTGAATAACTTTTTCTTTACATTTTT--TGAGGTATACATTCAAATAGAATCTGTTTTAACC
252 T-AATGGATAAC-TTTT-ATT-C-TTTTTCCTAAGGTAAACATTCAATTATAATCTGTTTTAATC
*
46138 AAAAATATTAAAAAATTCAATTTAAA
312 AAAAATATTAAAAAATTCAACTTAAA
* * * * * *
46164 ATCAATTATGAGAATAGAAATCCATTTAAAGCGACCAATAAGGCTTTTAAAGGAATGGTGAGTAT
1 ATCAATTATGAGATTACAAAACCATTTAAAGTGAGCAATAAGGCTTTTAAAGGAATGGTGACTAT
*
46229 AAATGGACTTTTCTTACCAATGAATGGTATTTTCTTCACGTTTCCCAAGGTAGACATTCAATTAT
66 AAATGGACTTTTCTTACCAATGAATGGT-TTTTCTTCACGTTTCCTAAGGTAGACATTCAATTAT
46294 AATCTGTTTAACAAAAAATGTAAAACAATTCAACTTAAAATCAATTATCAGATTACAAAACCATT
130 AATCTGTTTAACAAAAAATGTAAAACAATTCAACTTAAAATCAATTATCAGATTACAAAACCATT
* *
46359 TAAAGTGAGTAATAAGGCTTTCGAAAGCTTGCATGACTATAAGTGGACTTTT-TATGATAATGGA
195 TAAAGTGAGTAATAAGGCTTTCGAAAGCATGAATGACTATAAGTGGACTTTTCT-TGATAATGGA
* * *
46423 TTACTTTTAATTCTTGTTTCCTAAGGTAAACATTCAATTATAATATATTTTAATCAAAAAT-TTA
259 TAACTTTT-ATTCTT-TTTCCTAAGGTAAACATTCAATTATAATCTGTTTTAATCAAAAATATTA
* *
46487 AACAATTTAACTTAAA
322 AAAAATTCAACTTAAA
46503 ATCAATTATGAGATTACAAAACCATTTAAAGTGAGCAATAAGGCTTTTTAAA-GAATTGGTGACT
1 ATCAATTATGAGATTACAAAACCATTTAAAGTGAGCAATAAGGC-TTTTAAAGGAA-TGGTGACT
** ** * * * *
46567 ATAAATAAACTTTTCTTGTCAGTGAATGGGTTTTTATTCATGTTTTCTAAGGTAGACATTCAATT
64 ATAAATGGACTTTTCTTACCAATGAAT-GGTTTTTCTTCACGTTTCCTAAGGTAGACATTCAATT
* * * * *
46632 ATAATCTGTTTTCACCAAAAATGTAAAA-AAGTTCAATTTAAAATCAATTATGAGATTACAACAC
128 ATAATCTG-TTTAACAAAAAATGTAAAACAA-TTCAACTTAAAATCAATTATCAGATTACAAAAC
* ** * ** * * * *
46696 CATTAAAAGTGAGTAATAAGGCTTTTAAAAGAATGGGTGAGTATAAATGAACTTTTCTT-AGCAA
191 CATTTAAAGTGAGTAATAAGGCTTTCGAAAGCATGAATGACTATAAGTGGACTTTTCTTGA-TAA
* * * * ** * * * *
46760 T-GATGACCTTTTCTTCATATTTCCCAAGCCAGACATTCAATTATGATCTGTTTTAATGAATAAT
255 TGGAT-AACTTTTATTC-TTTTTCCTAAGGTAAACATTCAATTATAATCTGTTTTAATCAAAAAT
*
46824 ATAAAAAAATTCAACTTAAA
318 ATTAAAAAATTCAACTTAAA
* * * * *
46844 ATGAATTATGAGATCATAAAACTATTTAAAGTGAGCAATAAGGCTTTTGAAGGAATGGGTGACTA
1 ATCAATTATGAGATTACAAAACCATTTAAAGTGAGCAATAAGGCTTTTAAAGGAAT-GGTGACTA
* *********** * * *
46909 TATATGGACTTTNNNNNNNNNNNAATGGCTTTTACTTCACGTTTCCTGAGGCAGACATTCAATTA
65 TAAATGGACTTTTCTTACCAATGAATGG-TTTTTCTTCACGTTTCCTAAGGTAGACATTCAATTA
* * *
46974 TAATCTGTTTAATAAAAAATATAAAACAATTCAACTTAAAATCAATTATCGGATTACAAAACCAT
129 TAATCTGTTTAACAAAAAATGTAAAACAATTCAACTTAAAATCAATTATCAGATTACAAAACCAT
*
47039 TTAAAGTGATTAATAAGGCTTT
194 TTAAAGTGAGTAATAAGGCTTT
47061 TGAGGGGAAG
Statistics
Matches: 738, Mismatches: 133, Indels: 54
0.80 0.14 0.06
Matches are distributed among these distances:
337 2 0.00
338 4 0.01
339 65 0.09
340 334 0.45
341 286 0.39
342 46 0.06
343 1 0.00
ACGTcount: A:0.39, C:0.12, G:0.13, T:0.35
Consensus pattern (337 bp):
ATCAATTATGAGATTACAAAACCATTTAAAGTGAGCAATAAGGCTTTTAAAGGAATGGTGACTAT
AAATGGACTTTTCTTACCAATGAATGGTTTTTCTTCACGTTTCCTAAGGTAGACATTCAATTATA
ATCTGTTTAACAAAAAATGTAAAACAATTCAACTTAAAATCAATTATCAGATTACAAAACCATTT
AAAGTGAGTAATAAGGCTTTCGAAAGCATGAATGACTATAAGTGGACTTTTCTTGATAATGGATA
ACTTTTATTCTTTTTCCTAAGGTAAACATTCAATTATAATCTGTTTTAATCAAAAATATTAAAAA
ATTCAACTTAAA
Found at i:47061 original size:170 final size:171
Alignment explanation
Indices: 45822--47083 Score: 993
Period size: 170 Copynumber: 7.4 Consensus size: 171
45812 GTAAAAGAAT
* * * * * * * * * * *
45822 ATCAATTATGTGATTATAAGACCATTTAAAGCGAGTAATAAAGC-TTTCAAATACTTGAGTGAAT
1 ATCAATTATGAGATTACAAAACCATTTAAAGTGAGCAATAAGGCTTTTGAAAGA-ATGGGTGACT
* ** ** * * * *
45886 AAAAATAGG-CTTTTCTTGACAATGAATGATTTTTTTTTCACGTTTCTTTAGGCA-ATCATTCAA
65 ATAAAT-GGACTTTTCTTGACAATGAATGGCTTTTACTTCATGTTTCCTAAGGTAGA-CATTCAA
** * * ** * * *
45949 TTCCATTCCGTTTTAATTAAAAATGTAAAAAAAATCAACTTAAA
128 TTATAATCTGTTTTAACCAAAAATATAAAACAATTCAACTTAAA
* * * * * * * * * **
45993 ATCAATTATGAGACTGCAAAACTATTTAAAATGCGTAATAAGGCTTTCGAAGGCATGAATGACTA
1 ATCAATTATGAGATTACAAAACCATTTAAAGTGAGCAATAAGGCTTTTGAAAGAATGGGTGACTA
* * * ** * * * *
46058 TAGATGGA-TATTTCTTGTCAGTGAATAACTTTTTCTTTACAT-TTT-TTGAGGTATACATTCAA
66 TAAATGGACT-TTTCTTGACAATGAATGGCTTTTAC-TT-CATGTTTCCTAAGGTAGACATTCAA
* * *
46120 ATAGAATCTGTTTTAACCAAAAATATTAAAA-AATTCAATTTAAA
128 TTATAATCTGTTTTAACCAAAAATA-TAAAACAATTCAACTTAAA
* * * * * *
46164 ATCAATTATGAGAATAGAAATCCATTTAAAGCGACCAATAAGGCTTTT-AAAGGAAT-GGTGAGT
1 ATCAATTATGAGATTACAAAACCATTTAAAGTGAGCAATAAGGCTTTTGAAA-GAATGGGTGACT
* * *
46227 ATAAATGGACTTTTCTT-ACCAATGAATGG-TATTTTCTTCACGTTTCCCAAGGTAGACATTCAA
65 ATAAATGGACTTTTCTTGA-CAATGAATGGCT-TTTACTTCATGTTTCCTAAGGTAGACATTCAA
* *
46290 TTATAATCTG-TTTAACAAAAAATGTAAAACAATTCAACTTAAA
128 TTATAATCTGTTTTAACCAAAAATATAAAACAATTCAACTTAAA
* * * ** **
46333 ATCAATTATCAGATTACAAAACCATTTAAAGTGAGTAATAAGGCTTTCGAAAGCTTGCATGACTA
1 ATCAATTATGAGATTACAAAACCATTTAAAGTGAGCAATAAGGCTTTTGAAAGAATGGGTGACTA
* * * ** * * *
46398 TAAGTGGACTTTT-TATGATAATGGATTACTTTTAATTCTTGTTTCCTAAGGTAAACATTCAATT
66 TAAATGGACTTTTCT-TGACAATGAATGGCTTTTACTTCATGTTTCCTAAGGTAGACATTCAATT
* * * * *
46462 ATAATATATTTTAATCAAAAAT-TTAAACAATTTAACTTAAA
130 ATAATCTGTTTTAACCAAAAATATAAAACAATTCAACTTAAA
* *
46503 ATCAATTATGAGATTACAAAACCATTTAAAGTGAGCAATAAGGCTTTTTAAAGAATTGGTGACTA
1 ATCAATTATGAGATTACAAAACCATTTAAAGTGAGCAATAAGGCTTTTGAAAGAATGGGTGACTA
** * * * *
46568 TAAATAAACTTTTCTTGTCAGTGAATGGGTTTTTA-TTCATGTTTTCTAAGGTAGACATTCAATT
66 TAAATGGACTTTTCTTGACAATGAAT-GGCTTTTACTTCATGTTTCCTAAGGTAGACATTCAATT
* * *
46632 ATAATCTGTTTTCACCAAAAATGTAAAA-AAGTTCAATTTAAA
130 ATAATCTGTTTTAACCAAAAATATAAAACAA-TTCAACTTAAA
* * * * *
46674 ATCAATTATGAGATTACAACACCATTAAAAGTGAGTAATAAGGCTTTTAAAAGAATGGGTGAGTA
1 ATCAATTATGAGATTACAAAACCATTTAAAGTGAGCAATAAGGCTTTTGAAAGAATGGGTGACTA
* * * * **
46739 TAAATGAACTTTTCTT-AGCAATG-ATGACCTTTT-CTTCATATTTCCCAAGCCAGACATTCAAT
66 TAAATGGACTTTTCTTGA-CAATGAATG-GCTTTTACTTCATGTTTCCTAAGGTAGACATTCAAT
* ** * *
46801 TATGATCTGTTTTAATGAATAATATAAAAAAATTCAACTTAAA
129 TATAATCTGTTTTAACCAAAAATATAAAACAATTCAACTTAAA
* * * * *
46844 ATGAATTATGAGATCATAAAACTATTTAAAGTGAGCAATAAGGCTTTTGAAGGAATGGGTGACTA
1 ATCAATTATGAGATTACAAAACCATTTAAAGTGAGCAATAAGGCTTTTGAAAGAATGGGTGACTA
* *********** * * *
46909 TATATGGACTTTNNNNNNNNNNNAATGGCTTTTACTTCACGTTTCCTGAGGCAGACATTCAATTA
66 TAAATGGACTTTTCTTGACAATGAATGGCTTTTACTTCATGTTTCCTAAGGTAGACATTCAATTA
**
46974 TAATCTG-TTTAATAAAAAATATAAAACAATTCAACTTAAA
131 TAATCTGTTTTAACCAAAAATATAAAACAATTCAACTTAAA
** **
47014 ATCAATTATCG-GATTACAAAACCATTTAAAGTGATTAATAAGGCTTTTGAGGGGAA-GGGTGAC
1 ATCAATTAT-GAGATTACAAAACCATTTAAAGTGAGCAATAAGGCTTTTGA-AAGAATGGGTGAC
47077 TATAAAT
64 TATAAAT
47084 ACACTTTTAT
Statistics
Matches: 867, Mismatches: 191, Indels: 67
0.77 0.17 0.06
Matches are distributed among these distances:
168 7 0.01
169 74 0.09
170 470 0.54
171 299 0.34
172 15 0.02
173 2 0.00
ACGTcount: A:0.39, C:0.12, G:0.14, T:0.35
Consensus pattern (171 bp):
ATCAATTATGAGATTACAAAACCATTTAAAGTGAGCAATAAGGCTTTTGAAAGAATGGGTGACTA
TAAATGGACTTTTCTTGACAATGAATGGCTTTTACTTCATGTTTCCTAAGGTAGACATTCAATTA
TAATCTGTTTTAACCAAAAATATAAAACAATTCAACTTAAA
Found at i:47077 original size:511 final size:509
Alignment explanation
Indices: 45960--47091 Score: 1247
Period size: 511 Copynumber: 2.2 Consensus size: 509
45950 TCCATTCCGT
* * * * * * *
45960 TTTAATTAAAAATGTAAAAAAAATCAACTTAAAATCAATTATGAGACTGCAAAACTATTTAAAAT
1 TTTAATAAAAAAT-TAAAACAATTCAACTTAAAATCAATTATGAGATTACAAAACCATTTAAAGT
* * * * ** * **
46025 GCGTAATAAGGCTTTCGAAGGCATGAATGACTATAGATGGA-TATTTCTTGTCAGTGAATAACTT
65 GAGTAATAAGGCTTTTG-AGGGAAGGGTGACTATAAATAAACT-TTTCTTGTCAGTGAATAACTT
* * * *
46089 TTTCTTTACATTTTTTGAGGTATACATTCAAATAGAATCTGTTTTAACCAAAAATATTAAAAAAT
128 TTTCATTACATTTTTTAAGGTAGACATTCAAATAGAATCTGTTTTAACCAAAAATAGTAAAAAAT
* * *
46154 TCAATTTAAAATCAATTATGAGAATAGAAATCCATTTAAAGCGACCAATAAGGCTTTTAAAGGAA
193 TCAATTTAAAATCAATTATGAGAATACAAATCCATTAAAAGCGACCAATAAGGCTTTTAAAAGAA
* ** * **
46219 TGGTGAGTATAAATGGACTTTTCTTACCAATGAATGGTATTTTCTTCACGTTTCCCAAGGTAGAC
258 TGGTGAGTATAAATGAACTTTTCTTACCAATGAATGACATTTTCTTCACATTTCCCAAGCCAGAC
* * *
46284 ATTCAATTATAATCTGTTTAACAAAAAATGTAAAACAATTCAACTTAAAATCAATTATCAGATTA
323 ATTCAATTATAATCTGTTTAACAAAAAATATAAAAAAATTCAACTTAAAATCAATTATCAGATCA
* **
46349 CAAAACCATTTAAAGTGAGTAATAAGGCTTTCGAAAGCTTGCATGACTATAAGTGGACTTTTTAT
388 CAAAACCATTTAAAGTGAGCAATAAGGCTTTCGAAAGAATGCATGACTATAAGTGGACTTTTTAT
* * ** * *
46414 GATAATGGATTACTTTTAATTCTTGTTTCCTAAGGTAAACATTCAATTATAATATAT
453 GATAATGAATGACTTTTAATTCACGTTTCCTAAGGCAAACATTCAATTATAATATAG
* * *
46471 TTTAATCAAAAATTTAAACAATTTAACTTAAAATCAATTATGAGATTACAAAACCATTTAAAGTG
1 TTTAATAAAAAATTAAAACAATTCAACTTAAAATCAATTATGAGATTACAAAACCATTTAAAGTG
* * ** * ***
46536 AGCAATAAGGCTTTTTAAAGAATTGGTGACTATAAATAAACTTTTCTTGTCAGTGAATGGGTTTT
66 AGTAATAAGGCTTTTGAGGGAA-GGGTGACTATAAATAAACTTTTCTTGTCAGTGAATAACTTTT
* * *
46601 T-ATT-CATGTTTTCTAAGGTAGACATTCAATTATAATCTGTTTTCACCAAAAAT-GTAAAAAAG
130 TCATTACAT-TTTT-TAAGGTAGACATTCAAATAGAATCTGTTTTAACCAAAAATAGTAAAAAA-
* * **
46663 TTCAATTTAAAATCAATTATGAGATTACAACA-CCATTAAAAGTGAGTAATAAGGCTTTTAAAAG
192 TTCAATTTAAAATCAATTATGAGAATACAA-ATCCATTAAAAGCGACCAATAAGGCTTTTAAAAG
* * *
46727 AATGGGTGAGTATAAATGAACTTTTCTTAGCAATG-ATGACCTTTTCTTCATATTTCCCAAGCCA
256 AAT-GGTGAGTATAAATGAACTTTTCTTACCAATGAATGACATTTTCTTCACATTTCCCAAGCCA
* ** * * *
46791 GACATTCAATTATGATCTGTTTTAATGAATAATATAAAAAAATTCAACTTAAAATGAATTATGAG
320 GACATTCAATTATAATCTG-TTTAACAAAAAATATAAAAAAATTCAACTTAAAATCAATTATCAG
* * * * **
46856 ATCATAAAACTATTTAAAGTGAGCAATAAGGCTTTTGAAGGAATGGGTGACTATATA-TGGACTT
384 ATCACAAAACCATTTAAAGTGAGCAATAAGGCTTTCGAAAGAATGCATGACTATA-AGTGGACTT
*********** * * * * *
46920 TNNNNNNNNNNNAATGGCTTTTACTTCACGTTTCCTGAGGCAGACATTCAATTATAATCT-G
448 TTTATGATAATGAATGACTTTTAATTCACGTTTCCTAAGGCAAACATTCAATTATAATATAG
46981 TTTAATAAAAAATATAAAACAATTCAACTTAAAATCAATTATCG-GATTACAAAACCATTTAAAG
1 TTTAATAAAAAAT-TAAAACAATTCAACTTAAAATCAATTAT-GAGATTACAAAACCATTTAAAG
* *
47045 TGATTAATAAGGCTTTTGAGGGGAAGGGTGACTATAAATACACTTTT
64 TGAGTAATAAGGCTTTTGA-GGGAAGGGTGACTATAAATAAACTTTT
47092 ATNNNNNNNN
Statistics
Matches: 510, Mismatches: 99, Indels: 24
0.81 0.16 0.04
Matches are distributed among these distances:
508 3 0.01
509 15 0.03
510 233 0.46
511 254 0.50
512 5 0.01
ACGTcount: A:0.39, C:0.12, G:0.14, T:0.34
Consensus pattern (509 bp):
TTTAATAAAAAATTAAAACAATTCAACTTAAAATCAATTATGAGATTACAAAACCATTTAAAGTG
AGTAATAAGGCTTTTGAGGGAAGGGTGACTATAAATAAACTTTTCTTGTCAGTGAATAACTTTTT
CATTACATTTTTTAAGGTAGACATTCAAATAGAATCTGTTTTAACCAAAAATAGTAAAAAATTCA
ATTTAAAATCAATTATGAGAATACAAATCCATTAAAAGCGACCAATAAGGCTTTTAAAAGAATGG
TGAGTATAAATGAACTTTTCTTACCAATGAATGACATTTTCTTCACATTTCCCAAGCCAGACATT
CAATTATAATCTGTTTAACAAAAAATATAAAAAAATTCAACTTAAAATCAATTATCAGATCACAA
AACCATTTAAAGTGAGCAATAAGGCTTTCGAAAGAATGCATGACTATAAGTGGACTTTTTATGAT
AATGAATGACTTTTAATTCACGTTTCCTAAGGCAAACATTCAATTATAATATAG
Found at i:48195 original size:171 final size:171
Alignment explanation
Indices: 47971--49392 Score: 1227
Period size: 171 Copynumber: 8.3 Consensus size: 171
47961 TAAAAATGGG
* * * * *
47971 CTTTTCTTGACAATGAATGATTTTTTCTTCACG-TTTCTTAAGGCA-ATCATTCAATTACATTCC
1 CTTTTCTTGCCAATGAATGACTTTTTCTTCACGTTTTC-CAAGGCAGA-CATTCAATTATATTCT
* * * * *
48034 GTTTGAATAAAAAATGTAAAAAAATTAAACTTAAAATCAATTATGAGATTGCAAAACTATTTAAA
64 GTTTTAATCAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTACAAAACCATTTAAA
* * * * *
48099 G-CACGTAATAAGGCTTTCGAAGGCATGGGTAACTATAAATGGA
129 GTGA-GTAATAAGGCTTTTGAAGGAATGGGTGACTATAAATGAA
* * * * * * * * *
48142 CATTTCTTGGCAATGAATAACTTTTTCTTTACATTTTCCAATGTAGACATTCAATTAGAGTCTGT
1 CTTTTCTTGCCAATGAATGACTTTTTCTTCACGTTTTCCAAGGCAGACATTCAATTATATTCTGT
* * ** * *
48207 TTTAACCAAAAATATTGAAGAATTAAACTTAAAATCAATTATGAGA--ACATAAATCCATTTAAA
66 TTTAATCAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTACA-AAA-CCATTTAAA
* * * ** * *
48270 GCGAGCAATAAGGTTTTTGAAATAATAGGTGACTATAAGTGAA
129 GTGAGTAATAAGGCTTTTGAAGGAATGGGTGACTATAAATGAA
* * * * *
48313 CTTTTCTTACCAATGAATGATTTTTTCTTCACGTTTCCCAAGGAAGACATTCAATTATAATCTG-
1 CTTTTCTTGCCAATGAATGACTTTTTCTTCACGTTTTCCAAGGCAGACATTCAATTATATTCTGT
* * * * * *
48377 TTTAA-CAAAAAATGTAGACAAATTTAACTTAAAATCAATTATCAAATTACAAAACTATTTAAAG
66 TTTAATC-AAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTACAAAACCATTTAAAG
* * * *
48441 TGATTAATAAGGCTTCT-AAGTGGATGGGTGACTATAAATGGA
130 TGAGTAATAAGGCTTTTGAAG-GAATGGGTGACTATAAATGAA
* * * * * * * * * *
48483 -TTTTTTTTCTCAATAAATG-CTTGTTT-TTCACGTTTTTCTAGGTAAATAATCAATTATAATCT
1 CTTTTCTTGC-CAATGAATGACTT-TTTCTTCACGTTTTCCAAGGCAGACATTCAATTATATTCT
* * * * *
48545 GTTTTAA-CTAAAACTATAAAAAAATTCAACTTAAAATCAATTATCAGATTATAAAACCATTCAA
64 GTTTTAATC-AAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTACAAAACCATTTAA
* * ** ** * * *
48609 AGCGAGTAATAAGGCTTTTGAAAGCTTGCATGACTATGAGTGGA
128 AGTGAGTAATAAGGCTTTTGAAGGAATGGGTGACTATAAATGAA
* * * * * * * * * * *
48653 CTTTT-TATGCTAATGGATTACTTTTACTTCACGTTTTTCAAGGTAAATATTCAATTATAATATA
1 CTTTTCT-TGCCAATGAATGACTTTTTCTTCACGTTTTCCAAGGCAGACATTCAATTATATTCTG
**
48717 TTTTAATCAAAAATGTAAAGCAATTCAACTTAAAATCAATTATGAGATTACAAAACCATTTAAAG
65 TTTTAATCAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTACAAAACCATTTAAAG
* * *
48782 TGAGTAATAAGGATTTTTAAGGAATTGGTGACTATAAATGAA
130 TGAGTAATAAGGCTTTTGAAGGAATGGGTGACTATAAATGAA
* * * *
48824 CTTTTCTTGCCAGTAAATGACTTTTTATTCACGTTTTCCAAGGCAGACATTCAATTATAATT-TT
1 CTTTTCTTGCCAATGAATGACTTTTTCTTCACGTTTTCCAAGGCAGACATTCAATTAT-ATTCTG
* * * * * * *
48888 TTTTCATGAAAAATGTAAAAAATTTCAATTTAAAATCAATTATGAGATTATAACACCATTAAAAG
65 TTTTAATCAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTACAAAACCATTTAAAG
* * *
48953 TGAGTAATAAGGCTTTTAAAGGAATGGGTGACAATAAATAAA
130 TGAGTAATAAGGCTTTTGAAGGAATGGGTGACTATAAATGAA
* * * * * * *
48995 CTTTTGCTAG-CAATG-ATGGCCTTTTCTTCACATTTCCCAAGCCAGACATGCAATTATAATT-T
1 CTTTT-CTTGCCAATGAATGACTTTTTCTTCACGTTTTCCAAGGCAGACATTCAATTAT-ATTCT
* * * * *
49057 GTTTTAATGAAAAATATAAAAAAATTCAACTTAAAATGAATTATGAGATCATAAAACCATTTAAA
64 GTTTTAATCAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTACAAAACCATTTAAA
* * *
49122 GTGAGCAATAAGGCTTTTGAAGGAAAGGGTGACTATATATGAA
129 GTGAGTAATAAGGCTTTTGAAGGAATGGGTGACTATAAATGAA
* * *
49165 CTTTTCCTGCCAATGAAT-AGCTTTTACTTCACG-TTTCCTAATGCAGACATTCAATTAT-TATC
1 CTTTTCTTGCCAATGAATGA-CTTTTTCTTCACGTTTTCC-AAGGCAGACATTCAATTATAT-TC
* * * *
49227 TG-TTTAACCGAAACTGTAAAAAAATTTAACTTAAAATCAATTATCGA-ATTACAAAACCATTTA
63 TGTTTTAATCAAAAATGTAAAAAAATTCAACTTAAAATCAATTAT-GAGATTACAAAACCATTTA
* * * * * *
49290 AAATGATTAATAAGGCTTCT-AAGGGGATGGGTGAGTATAAATGCA
127 AAGTGAGTAATAAGGCTTTTGAA-GGAATGGGTGACTATAAATGAA
** * * * ** *
49335 CTTTTCTTGCCACGGAATGCCTTTTGCTTCACATTTT-TTAGGCAGACAGTCAATTATA
1 CTTTTCTTGCCAATGAATGACTTTTTCTTCACGTTTTCCAAGGCAGACATTCAATTATA
49393 ATATGTNNNN
Statistics
Matches: 1006, Mismatches: 213, Indels: 65
0.78 0.17 0.05
Matches are distributed among these distances:
169 65 0.06
170 435 0.43
171 490 0.49
172 16 0.02
ACGTcount: A:0.38, C:0.13, G:0.13, T:0.35
Consensus pattern (171 bp):
CTTTTCTTGCCAATGAATGACTTTTTCTTCACGTTTTCCAAGGCAGACATTCAATTATATTCTGT
TTTAATCAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTACAAAACCATTTAAAGT
GAGTAATAAGGCTTTTGAAGGAATGGGTGACTATAAATGAA
Found at i:48910 original size:341 final size:340
Alignment explanation
Indices: 47971--49307 Score: 1170
Period size: 341 Copynumber: 3.9 Consensus size: 340
47961 TAAAAATGGG
* * ** * * * **
47971 CTTTTCT-TGACAATGAATGATTTTTTCTTCACGTTTCTTAAGGCAATCATTCAATTACATTCCG
1 CTTTTCTATG-CAATGGATGA-CTTTTCTTCACGTTTCCCAAGG-AAACATTCAATTATAAT-AT
* * * * *
48035 TTTGAATAAAAAATGTAAAAAAATTAAACTTAAAATCAATTATGAGATTGCAAAACTATTTAAAG
62 TTTTAATCAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTACAAAACCATTTAAAG
* * * * * * * *
48100 -CACGTAATAAGGCTTTCGAAGGCATGGGTAACTATAAATGGACATTTCTTGGCAATGAATAACT
127 TGA-GTAATAAGGCTTTCGAAGGAATGGGTGACTATAAATGAACTTTTCTTGCCAATAAATGACT
* * * * * * * * ** *
48164 TTTTCTTTACATTTTCCAATGTAGACATTCAATTAGAGTCTGTTTTAACC-AAAAATATTGAAGA
191 TTTTATTCACGTTTTCCAAGGCAGACATTCAATTATAATCTGTTTTAACCGAAAAATGTAAAAAA
* * ** * * * *
48228 ATTAAACTTAAAATCAATTATGAGAACATAAATCCATTTAAAGCGAGCAATAAGGTTTTTGAAAT
256 ATTCAACTTAAAATCAATTATCAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAAG
* *
48293 AATAGGTGACTATAAGTGAA
321 GATTGGTGACTATAAGTGAA
* * * * *
48313 CTTTTCT-TACCAATGAATGATTTTTTCTTCACGTTTCCCAAGGAAGACATTCAATTATAATCTG
1 CTTTTCTAT-GCAATGGATGA-CTTTTCTTCACGTTTCCCAAGGAA-ACATTCAATTATAATATT
* * * * * *
48377 TTTAA-CAAAAAATGTAGACAAATTTAACTTAAAATCAATTATCAAATTACAAAACTATTTAAAG
63 TTTAATC-AAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTACAAAACCATTTAAAG
* * * * * *
48441 TGATTAATAAGGC-TTCTAAGTGGATGGGTGACTATAAATGGA-TTTTTTTTCTCAATAAATG-C
127 TGAGTAATAAGGCTTTCGAAG-GAATGGGTGACTATAAATGAACTTTTCTTGC-CAATAAATGAC
* * * * * * * * *
48503 TTGTTT-TTCACGTTTTTCTAGGTAAATAATCAATTATAATCTGTTTTAA-CTAAAACTATAAAA
190 TT-TTTATTCACGTTTTCCAAGGCAGACATTCAATTATAATCTGTTTTAACCGAAAAATGTAAAA
*
48566 AAATTCAACTTAAAATCAATTATCAGATTATAAAACCATTCAAAGCGAGTAATAAGGCTTTTGAA
254 AAATTCAACTTAAAATCAATTATCAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAA
* * * *
48631 A-GCTTGCATGACTATGAGTGGA
319 AGGATTG-GTGACTATAAGTGAA
* ** *
48653 CTTTT-TATGCTAATGGATTACTTTTACTTCACGTTTTTCAAGGTAAATATTCAATTATAATATA
1 CTTTTCTATGC-AATGGATGACTTTT-CTTCACGTTTCCCAAGG-AAACATTCAATTATAATAT-
**
48717 TTTTAATCAAAAATGTAAAGCAATTCAACTTAAAATCAATTATGAGATTACAAAACCATTTAAAG
62 TTTTAATCAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTACAAAACCATTTAAAG
* ** * *
48782 TGAGTAATAAGGATTTTTAAGGAATTGGTGACTATAAATGAACTTTTCTTGCCAGTAAATGACTT
127 TGAGTAATAAGGCTTTCGAAGGAATGGGTGACTATAAATGAACTTTTCTTGCCAATAAATGACTT
* * * * *
48847 TTTATTCACGTTTTCCAAGGCAGACATTCAATTATAATTTTTTTTCA-TGAAAAATGTAAAAAAT
192 TTTATTCACGTTTTCCAAGGCAGACATTCAATTATAATCTGTTTTAACCGAAAAATGTAAAAAAA
* * * * *
48911 TTCAATTTAAAATCAATTATGAGATTATAACACCATTAAAAGTGAGTAATAAGGCTTTT-AAAGG
257 TTCAACTTAAAATCAATTATCAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAAGG
* * * *
48975 AATGGGTGACAATAAATAAA
322 -ATTGGTGACTATAAGTGAA
* * * * * *
48995 CTTTTGCTA-GCAAT-GATGGCCTTTTCTTCACATTTCCCAAGCCAGACATGCAATTATAATTTG
1 CTTTT-CTATGCAATGGAT-GACTTTTCTTCACGTTTCCCAAG-GAAACATTCAATTATAATAT-
* * * * *
49058 TTTTAATGAAAAATATAAAAAAATTCAACTTAAAATGAATTATGAGATCATAAAACCATTTAAAG
62 TTTTAATCAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTACAAAACCATTTAAAG
* * * * * *
49123 TGAGCAATAAGGCTTTTGAAGGAAAGGGTGACTATATATGAACTTTTCCTGCCAATGAAT-AGC-
127 TGAGTAATAAGGCTTTCGAAGGAATGGGTGACTATAAATGAACTTTTCTTGCCAATAAATGA-CT
* * *
49186 TTTTACTTCACG-TTTCCTAATGCAGACATTCAATTATTATCTG-TTTAACCG-AAACTGTAAAA
191 TTTTA-TTCACGTTTTCC-AAGGCAGACATTCAATTATAATCTGTTTTAACCGAAAAATGTAAAA
* * ** *
49248 AAATTTAACTTAAAATCAATTATC-GAATTACAAAACCATTTAAAATGATTAATAAGGCTT
254 AAATTCAACTTAAAATCAATTATCAG-ATTATAAAACCATTTAAAGCGAGTAATAAGGCTT
49308 CTAAGGGGAT
Statistics
Matches: 815, Mismatches: 150, Indels: 62
0.79 0.15 0.06
Matches are distributed among these distances:
339 10 0.01
340 242 0.30
341 365 0.45
342 192 0.24
343 4 0.00
344 2 0.00
ACGTcount: A:0.39, C:0.13, G:0.13, T:0.35
Consensus pattern (340 bp):
CTTTTCTATGCAATGGATGACTTTTCTTCACGTTTCCCAAGGAAACATTCAATTATAATATTTTT
AATCAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTACAAAACCATTTAAAGTGAG
TAATAAGGCTTTCGAAGGAATGGGTGACTATAAATGAACTTTTCTTGCCAATAAATGACTTTTTA
TTCACGTTTTCCAAGGCAGACATTCAATTATAATCTGTTTTAACCGAAAAATGTAAAAAAATTCA
ACTTAAAATCAATTATCAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAAGGATTG
GTGACTATAAGTGAA
Found at i:50026 original size:170 final size:171
Alignment explanation
Indices: 49601--50039 Score: 528
Period size: 171 Copynumber: 2.6 Consensus size: 171
49591 TTTCCCAAAA
* * * * *
49601 CAAATATTCAATTATAATATATTTTGATCAAAAATGTAAAGCAA-TTCAACTTAAAATTAATTAT
1 CAAATATTCAATTATAATATGTTTTAATGAAAAATGTAAA-AAATTTCAACTTAAAATCAATTAT
*
49665 GAGATTACAAAACTATTTGAAA-TGCGTAATAAGGCTTTTGAAGGAACTAGTGACAATAAATGAA
65 GAGATTACAAAACTATTT-AAAGTGAGTAATAAGGCTTTTGAAGGAACTAGTGACAATAAATGAA
** * * * * *
49729 TTTTTCTTGCCAGTGAATGGCTTTTTCTTCACGTTTCTCGAGG
129 TTTTTCTTGCCAACGAATGGCCTCTACTTCACATTTCCCGAGG
* * * *
49772 CAAACATTCAATTATAATCTGTTTTCATGACAAATGTAAAAAATTTCAACTTAAAATCAATTATG
1 CAAATATTCAATTATAATATGTTTTAATGAAAAATGTAAAAAATTTCAACTTAAAATCAATTATG
* * *
49837 AAATTACAACAGC-ATTTAAAGTGAGTAATAAGGCTTTTGAAGGAA-TGAGTGACTATAAATGAA
66 AGATTACAA-AACTATTTAAAGTGAGTAATAAGGCTTTTGAAGGAACT-AGTGACAATAAATGAA
* * * * *
49900 TTTTTCTTGGCAACG-ATGTCCTCTACTTTATATTTCCCGTGG
129 TTTTTCTTGCCAACGAATGGCCTCTACTTCACATTTCCCGAGG
* * * * *
49942 TAGATATTGAATTATAATATGTTTTAATGAAAAATATAAAAAATTTCAACTTAAAATGAATTATG
1 CAAATATTCAATTATAATATGTTTTAATGAAAAATGTAAAAAATTTCAACTTAAAATCAATTATG
*
50007 AGATTATAAAACTATTTAAAGTGAGTAATAAGG
66 AGATTACAAAACTATTTAAAGTGAGTAATAAGG
50040 NNNNNNNNNN
Statistics
Matches: 227, Mismatches: 36, Indels: 11
0.83 0.13 0.04
Matches are distributed among these distances:
169 2 0.01
170 107 0.47
171 116 0.51
172 2 0.01
ACGTcount: A:0.40, C:0.11, G:0.14, T:0.35
Consensus pattern (171 bp):
CAAATATTCAATTATAATATGTTTTAATGAAAAATGTAAAAAATTTCAACTTAAAATCAATTATG
AGATTACAAAACTATTTAAAGTGAGTAATAAGGCTTTTGAAGGAACTAGTGACAATAAATGAATT
TTTCTTGCCAACGAATGGCCTCTACTTCACATTTCCCGAGG
Found at i:50938 original size:170 final size:171
Alignment explanation
Indices: 50524--51772 Score: 1023
Period size: 170 Copynumber: 7.3 Consensus size: 171
50514 GCATCCGCTG
* **
50524 TAATAAAAAATGTAAAAAAATTCAA-TCTAAAATCAATTATGAGATTGTAAAACCATTTAAAGTG
1 TAATCAAAAATGTAAAAAAATTCAACT-TAAAATCAATTATGAGATTACAAAACCATTTAAAGTG
* * * * * * * *
50588 CGTAATAAGGCTTTCGAAGGCATGGTTGACTATAAATGGGCATTTCCTGA-CAATG-ATTATCTT
65 AGTAATAAGGCTTTTGAAGGAATGGGTGACTATAAATGGAC-TTTTCTTACCAATGAATGA-CTT
* * * * * * *
50651 TTTCTTTACATTTCCCAAGGTAGACTTTCAACTATAATCTGTTT
128 TTTCTTCACGTTTTCCAAGGTAAACATTCAATTATAATCTGATT
* * * * * * **
50695 TAACCAAAAATATTAAAAAAATT-AATTTAAAATCAATTATGAGAATATAAATCCATTTAAAGCA
1 TAATCAAAAAT-GTAAAAAAATTCAACTTAAAATCAATTATGAGATTACAAAACCATTTAAAGTG
* * *
50759 AGCAATAAGGCTTTTGAAAGAATGGGTGACTATAAATGGACTTTTCTTACCAATGAATGATTTTT
65 AGTAATAAGGCTTTTGAAGGAATGGGTGACTATAAATGGACTTTTCTTACCAATGAATGACTTTT
* * *
50824 TCTTCATGTTTTCCAAGGCAGACATTCAATTATAATCT-ATT
130 TCTTCACGTTTTCCAAGGTAAACATTCAATTATAATCTGATT
* * ** * *
50865 TAACCAAAAATGTAGAAAAATTCAACTTAAAATCAATTATTTGGTTACAAAACCATTTAAAATGA
1 TAATCAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTACAAAACCATTTAAAGTGA
* * * * * * * *
50930 TTAATAAGGCTTCT-AAGGGGATGAGTGACTATAAGTGGACTTTTCTTCCCTATGAA-CACCTTT
66 GTAATAAGGCTTTTGAA-GGAATGGGTGACTATAAATGGACTTTTCTTACCAATGAATGA-CTTT
* *** * *
50993 TTCTTCACATTTTTTGAGGTAAATAATCAATTATAATCTGA-T
129 TTCTTCACGTTTTCCAAGGTAAACATTCAATTATAATCTGATT
* * * * *
51035 TAATAAAAAATATAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAATCATTTAAAGCGA
1 TAATCAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTACAAAACCATTTAAAGTGA
* * ** ** * * * * * * * *
51100 CTAATAAGG-TTTTCGAAAGCTTGCATAACTATAAGTTGACTTTTTTTGCTAATGGATTAC-TTT
66 GTAATAAGGCTTTT-GAAGGAATGGGTGACTATAAATGGACTTTTCTTACCAATGAATGACTTTT
* * * *
51163 TCTTCATG-TTTCCTAAAGTAAACATTCAATTAAAATAT-ATTT
130 TCTTCACGTTTTCC-AAGGTAAACATTCAATTATAATCTGA-TT
* * * ** * *
51205 TAATTAAAATTATAAAGTAATTCAACTTAAAATCAATTATGAGTTTACAAAACCATTTAAAGTTA
1 TAATCAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTACAAAACCATTTAAAGTGA
* * * * * *
51270 GTAATAAGGCTTTTTAAGGAATTGGG-GTCTATAAATGAACTTTTCTTGCCAGTGAATGGCTTTT
66 GTAATAAGGCTTTTGAAGGAA-TGGGTGACTATAAATGGACTTTTCTTACCAATGAATGACTTTT
* * * *
51334 TATTCA--TATTTCTTAAGGCAGACATTCAATTATAATCT-ATT
130 TCTTCACGT-TTTC-CAAGGTAAACATTCAATTATAATCTGATT
* * * * *
51375 T--TCAAAAAAATTGTAAAAAAATTTAATTTAAAATCAATTATGAGATTACAACACTATTAAAAG
1 TAATC--AAAAA-TGTAAAAAAATTCAACTTAAAATCAATTATGAGATTACAAAACCATTTAAAG
* * * * *
51438 TGAGTAATAAGGCTTTTGAAGGAATGGGTGACTATAAATGAACTTTTCATAGCAAT-AATGGCCT
63 TGAGTAATAAGGCTTTTGAAGGAATGGGTGACTATAAATGGACTTTTCTTACCAATGAATGACTT
* * * * * * * * *
51502 TTACTTCAC-ATTTCCGAGGCAAATATTGAATTACAATATGTTT
128 TTTCTTCACGTTTTCCAAGGTAAACATTCAATTATAATCTGATT
* * * * * *
51545 TAATGAAAAATGCAAAAAATTTCAACTTAAAATAAATTATG-GAATTATAAAACCATTTAAAGTA
1 TAATCAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAG-ATTACAAAACCATTTAAAGTG
* * * *
51609 AGCAATAAGGCTTTTGAAGAAATGAGTGACTATAAATGGACTTTTCTTGCCAATGAATGACTTTT
65 AGTAATAAGGCTTTTGAAGGAATGGGTGACTATAAATGGACTTTTCTTACCAATGAATGACTTTT
* * * * *
51674 TCTTCACG-TTTCTCTAGATAAGCATTCAATTATAATTTGTTT
130 TCTTCACGTTTTC-CAAGGTAAACATTCAATTATAATCTGATT
* * *
51716 TAATCTAAAATGT-AAAAAATTCAACTTAAAATTATTTATGAGATTACAAAACCATTT
1 TAATCAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTACAAAACCATTT
51773 TGCTTCACGT
Statistics
Matches: 850, Mismatches: 195, Indels: 67
0.76 0.18 0.06
Matches are distributed among these distances:
168 6 0.01
169 149 0.18
170 402 0.47
171 278 0.33
172 15 0.02
ACGTcount: A:0.40, C:0.12, G:0.12, T:0.36
Consensus pattern (171 bp):
TAATCAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTACAAAACCATTTAAAGTGA
GTAATAAGGCTTTTGAAGGAATGGGTGACTATAAATGGACTTTTCTTACCAATGAATGACTTTTT
CTTCACGTTTTCCAAGGTAAACATTCAATTATAATCTGATT
Found at i:51571 original size:510 final size:509
Alignment explanation
Indices: 50524--51772 Score: 1176
Period size: 510 Copynumber: 2.4 Consensus size: 509
50514 GCATCCGCTG
** * * *
50524 TAATAAAAAATGTAAAAAAATTCAA-TCTAAAATCAATTAT-GAGATTGTAAAACCATTTAAAGT
1 TAATAAAAAATACAAAAAAATTCAACT-TAAAATAAATTATGGA-ATTATAAAACCATTTAAAGC
** * * ** * * * * * *
50587 GCGTAATAAGGCTTTCGAAGGCATG-GTTGACTATAAATGGGCATTTCCTGACAATG-ATTATCT
64 AAGCAATAAGGCTTTTGAAGAAATGAG-TAACTATAAATGGACTTTTCTTGCCAATGAATGA-CT
* * * * * * * * * * * * *
50650 TTTTCTTTACATTTC-CCAAGGTAGACTTTCAACTATAATCTGTTTTAACCAAAAATATTAAAAA
127 TTTTCTTCACGTTTCTCTAA-ATAAACATTCAATTAAAATATATTTTAATCTAAAAT-GT-AAAA
* * * *
50714 AATT-AATTTAAAATCAATTATGAGAATATAAATCCATTTAAAGCAAGCAATAAGGCTTTTGAAA
189 AATTCAACTTAAAATCAATTATGAGATTACAAAACCATTTAAAGCAAGCAATAAGGCTTTTGAAA
* * * *
50778 GAATGGGTGACTATAAATGGACTTTTCTTACCAATGAATGATTTTTTCTTCATGTTTTCCAAGGC
254 GAATGGGTGACTATAAATGAACTTTTCTTACCAATGAATGACTTTTTATTCATATTTTCCAAGGC
* **
50843 AGACATTCAATTATAATCTATTTAACCAAAAATGTAGAAAAATTCAACTTAAAATCAATTATTTG
319 AGACATTCAATTATAATCTATTTAA-CAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAG
* * * * *
50908 GTTACAAAACCATTTAAAATGATTAATAAGGCTTCTAAGGGGATGAGTGACTATAAGTGGACTTT
383 ATTACAAAACCATTTAAAATGAGTAATAAGGCTTCTAAGGGAATGAGTGACTATAAATGAACTTT
* * * * ** * * *
50973 TCTTCCCTATGAACACCTTTTTCTTCACATTTTTTGAGGTAAATAATCAATTATAATCTGAT
448 TCATACCAATGAACACCTTTTACTTCACATTTTCCGAGGCAAATAATCAATTACAATATGAT
* * * *
51035 TAATAAAAAATATAAAAAAATTCAACTTAAAATCAATTAT-GAGATTATAAAATCATTTAAAGCG
1 TAATAAAAAATACAAAAAAATTCAACTTAAAATAAATTATGGA-ATTATAAAACCATTTAAAGCA
** * * * * * *
51099 A-CTAATAAGG-TTTTCGAA-AGCTTGCA-TAACTATAAGTTGACTTTTTTTGCTAATGGATTAC
65 AGC-AATAAGGCTTTT-GAAGA-AATG-AGTAACTATAAATGGACTTTTCTTGCCAATGAATGAC
*
51160 -TTTTCTTCATGTTTC-CTAAAGTAAACATTCAATTAAAATATATTTTAAT-TAAAAT-TATAAA
126 TTTTTCTTCACGTTTCTCTAAA-TAAACATTCAATTAAAATATATTTTAATCTAAAATGTA-AAA
* ** * *
51221 GTAATTCAACTTAAAATCAATTATGAGTTTACAAAACCATTTAAAGTTAGTAATAAGGCTTTTTA
189 --AATTCAACTTAAAATCAATTATGAGATTACAAAACCATTTAAAGCAAGCAATAAGGCTTTTGA
* * * * * *
51286 AGGAATTGGG-GTCTATAAATGAACTTTTCTTGCCAGTGAATGGCTTTTTATTCATA-TTTCTTA
252 AAGAA-TGGGTGACTATAAATGAACTTTTCTTACCAATGAATGACTTTTTATTCATATTTTC-CA
* *
51349 AGGCAGACATTCAATTATAATCTATTTTCAA-AAAAATTGTAAAAAAATTTAATTTAAAATCAAT
315 AGGCAGACATTCAATTATAATCTA-TTT-AACAAAAA-TGTAAAAAAATTCAACTTAAAATCAAT
* * * *
51413 TATGAGATTACAACACTA-TTAAAAGTGAGTAATAAGGCTTTTGAA-GGAATGGGTGACTATAAA
377 TATGAGATTACAAAACCATTTAAAA-TGAGTAATAAGGCTTCT-AAGGGAATGAGTGACTATAAA
* ** * *
51476 TGAACTTTTCATAGCAAT-AATGGCC-TTTACTTCACA-TTTCCGAGGCAAATATTGAATTACAA
440 TGAACTTTTCATACCAATGAA-CACCTTTTACTTCACATTTTCCGAGGCAAATAATCAATTACAA
*
51538 TATGTTT
504 TATG-AT
* * * *
51545 TAATGAAAAATGCAAAAAATTTCAACTTAAAATAAATTATGGAATTATAAAACCATTTAAAGTAA
1 TAATAAAAAATACAAAAAAATTCAACTTAAAATAAATTATGGAATTATAAAACCATTTAAAGCAA
*
51610 GCAATAAGGCTTTTGAAGAAATGAGTGACTATAAATGGACTTTTCTTGCCAATGAATGACTTTTT
66 GCAATAAGGCTTTTGAAGAAATGAGTAACTATAAATGGACTTTTCTTGCCAATGAATGACTTTTT
* * * * *
51675 CTTCACGTTTCTCTAGATAAGCATTCAATTATAATTTGTTTTAATCTAAAATGTAAAAAATTCAA
131 CTTCACGTTTCTCTAAATAAACATTCAATTAAAATATATTTTAATCTAAAATGTAAAAAATTCAA
* *
51740 CTTAAAATTATTTATGAGATTACAAAACCATTT
196 CTTAAAATCAATTATGAGATTACAAAACCATTT
51773 TGCTTCACGT
Statistics
Matches: 603, Mismatches: 105, Indels: 61
0.78 0.14 0.08
Matches are distributed among these distances:
506 1 0.00
507 4 0.01
509 37 0.06
510 310 0.51
511 227 0.38
512 22 0.04
513 2 0.00
ACGTcount: A:0.40, C:0.12, G:0.12, T:0.36
Consensus pattern (509 bp):
TAATAAAAAATACAAAAAAATTCAACTTAAAATAAATTATGGAATTATAAAACCATTTAAAGCAA
GCAATAAGGCTTTTGAAGAAATGAGTAACTATAAATGGACTTTTCTTGCCAATGAATGACTTTTT
CTTCACGTTTCTCTAAATAAACATTCAATTAAAATATATTTTAATCTAAAATGTAAAAAATTCAA
CTTAAAATCAATTATGAGATTACAAAACCATTTAAAGCAAGCAATAAGGCTTTTGAAAGAATGGG
TGACTATAAATGAACTTTTCTTACCAATGAATGACTTTTTATTCATATTTTCCAAGGCAGACATT
CAATTATAATCTATTTAACAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTACAAA
ACCATTTAAAATGAGTAATAAGGCTTCTAAGGGAATGAGTGACTATAAATGAACTTTTCATACCA
ATGAACACCTTTTACTTCACATTTTCCGAGGCAAATAATCAATTACAATATGAT
Found at i:52426 original size:170 final size:168
Alignment explanation
Indices: 51837--52788 Score: 786
Period size: 170 Copynumber: 5.6 Consensus size: 168
51827 GTAAAAGAAT
* * * * * *
51837 ATCAATTATGTGATTATAAGACCATTTAAAGCGAGTAATAAAGCTTTTAAA-TACTTGAGTGAAT
1 ATCAATTATGAGATTATAA-ACCATTTAAAGCGAGTAATAAGGCTTTTAAAGGA-ATGGGTGACT
* * * * *
51901 AAAAATGGGCTTTTCTTGA-TAATGAATGATTTTTTCTTCACGTTTCTTTAA-GCA-ATCATTGA
64 ATAAATGGACTTTTCTT-ACCAATGAATGATTTTTTCTTCACGTTTC-CTAAGGCAGA-CATTCA
** * * * *
51963 ATTCCATTCCGTTTAAATAAAAAATGTAAAAAAATTCAACTTAAA
126 ATTATAATCTGTTT-AA-CAAAAATATAAAAAAATTCAACTTAAA
* * * * **
52008 ATCAATTATGGGACTGTA-AAACTATTTAAAGC-ACGTAATAAGGCTTTTGAAGGCATGAATGAC
1 ATCAATTATGAGA-T-TATAAACCATTTAAAGCGA-GTAATAAGGCTTTTAAAGGAATGGGTGAC
* * * ** * * * * * * *
52071 TATAGATCGACATTTCTTGTCAATGAATAATTTTTTCTTTACATTT-TTCGAGGTATACATTCAA
63 TATAAATGGACTTTTCTTACCAATGAATGATTTTTTCTTCACGTTTCCT-AAGGCAGACATTCAA
* *
52135 TTAGAATCTGTTTTAACTAAAAATATTAAAAAATTCAACTTAAA
127 TTATAATCTG-TTTAAC-AAAAATATAAAAAAATTCAACTTAAA
* * * * * *
52179 ATTAACTATGAGAATATAAATCCACTTAAAGCGAGCAATAAGGCTTTTGAAGGAAT-GGTGACTA
1 ATCAATTATGAGATTATAAA-CCATTTAAAGCGAGTAATAAGGCTTTTAAAGGAATGGGTGACTA
*
52243 TAAATGGACTTTTCTTACCAATGAATGATTTTTTCTTCACGTTTCCTAAGACAGACATTCAATTA
65 TAAATGGACTTTTCTTACCAATGAATGATTTTTTCTTCACGTTTCCTAAGGCAGACATTCAATTA
* * * *
52308 TAATATGTTTAACAGAAAATCTAAAAAAATTTAAATTAAA
130 TAATCTGTTTAACA-AAAATATAAAAAAATTCAACTTAAA
* * * *
52348 ATCAATTATGAGATTACAACACCATTAAAAGTGAGTAATAAGGCTTTTAAAGGAATGGGTGAGTA
1 ATCAATTATGAGATTATAA-ACCATTTAAAGCGAGTAATAAGGCTTTTAAAGGAATGGGTGACTA
* * ** * * *
52413 TAAATGAACTTTTCTTAGCAATG-ATGACCTTTTCTTCACATTTTCC-AAGCCAGACATTCATTT
65 TAAATGGACTTTTCTTACCAATGAATGATTTTTTCTTCAC-GTTTCCTAAGGCAGACATTCAATT
* * * **
52476 ATGATAT-TTTTTAATGAATAATATATTAAAATTCAACTTAAA
129 AT-A-ATCTGTTTAA-CAAAAATATAAAAAAATTCAACTTAAA
* * * *
52518 ATGAATTATGAGATCATAAAACTATTTAAAGTGAGTAATAAGGCTTTTGAAA-GAATGGGTGACT
1 ATCAATTATGAGATTAT-AAACCATTTAAAGCGAGTAATAAGGCTTTT-AAAGGAATGGGTGACT
* * * * ** *
52582 ATATATGGACTTTT-TCTGCCGACGAATG-GCTTTACTTCACGTTTCCTAAGGCAGACATTCAAT
64 ATAAATGGACTTTTCT-TACCAATGAATGATTTTTTCTTCACGTTTCCTAAGGCAGACATTCAAT
*
52645 TATAATCTGTTTAACCAAAAATATAAAAAAATTTAACTTAAA
128 TATAATCTGTTTAA-CAAAAATATAAAAAAATTCAACTTAAA
* * * * **
52687 ATCAATTATCG-GATTACAAAACCATTTAAAGAGATTAATAAGGCTTCTGAGGGGAA-GGGTGAC
1 ATCAATTAT-GAGATTA-TAAACCATTTAAAGCGAGTAATAAGGCTT-TTAAAGGAATGGGTGAC
*
52750 TATAAATGCACTTTTCTTACCAATGAATG-TCTTTTTCTT
63 TATAAATGGACTTTTCTTACCAATGAATGAT-TTTTTCTT
52789 NNNNNNNNNN
Statistics
Matches: 624, Mismatches: 124, Indels: 67
0.77 0.15 0.08
Matches are distributed among these distances:
168 3 0.00
169 209 0.33
170 232 0.37
171 170 0.27
172 8 0.01
173 2 0.00
ACGTcount: A:0.38, C:0.13, G:0.14, T:0.35
Consensus pattern (168 bp):
ATCAATTATGAGATTATAAACCATTTAAAGCGAGTAATAAGGCTTTTAAAGGAATGGGTGACTAT
AAATGGACTTTTCTTACCAATGAATGATTTTTTCTTCACGTTTCCTAAGGCAGACATTCAATTAT
AATCTGTTTAACAAAAATATAAAAAAATTCAACTTAAA
Found at i:52560 original size:339 final size:339
Alignment explanation
Indices: 52164--52775 Score: 867
Period size: 339 Copynumber: 1.8 Consensus size: 339
52154 AAAATATTAA
* *
52164 AAAATTCAACTTAAAATTAACTATGAGAATATAAATCCACTTAAAGCGAGCAATAAGGCTTTTGA
1 AAAATTCAACTTAAAATGAACTATGAGAATATAAAACCACTTAAAGCGAGCAATAAGGCTTTTGA
* * ** *
52229 AGGAAT-GGTGACTATAAATGGAC-TTTTCTTACCAATGAATGATTTTTTCTTCACGTTTCCTAA
66 AAGAATGGGTGACTATAAATGGACTTTTTC-TACCAACGAATG-GCTTTACTTCACGTTTCCTAA
*
52292 GACAGACATTCAATTATAATATGTTTAA-CAGAAAATCTAAAAAAATTTAAATTAAAATCAATTA
129 GACAGACATTCAATTATAATATGTTTAACCA-AAAATATAAAAAAATTTAAATTAAAATCAATTA
* * * *
52356 T-GAGATTACAACACCATTAAAAGTGAGTAATAAGGCTT-TTAAAGGAATGGGTGAGTATAAATG
193 TCG-GATTACAAAACCATTAAAAGAGAGTAATAAGGCTTCTGAAAGGAA-GGGTGACTATAAATG
*
52419 AACTTTTCTTAGCAATGATGACCTTTTCTTCACATTTTCCAAGCCAGACATTCATTTATGATATT
256 AACTTTTCTTACCAATGATGACCTTTTCTTCACATTTTCCAAGCCAGACATTCATTTATGATATT
52484 TTTTAATGAATAATATATT
321 TTTTAATGAATAATATATT
* * * * *
52503 AAAATTCAACTTAAAATGAATTATGAG-ATCATAAAACTATTTAAAGTGAGTAATAAGGCTTTTG
1 AAAATTCAACTTAAAATGAACTATGAGAAT-ATAAAACCACTTAAAGCGAGCAATAAGGCTTTTG
* * *
52567 AAAGAATGGGTGACTATATATGGACTTTTTCTGCCGACGAATGGCTTTACTTCACGTTTCCTAAG
65 AAAGAATGGGTGACTATAAATGGACTTTTTCTACCAACGAATGGCTTTACTTCACGTTTCCTAAG
* * *
52632 GCAGACATTCAATTATAATCTGTTTAACCAAAAATATAAAAAAATTTAACTTAAAATCAATTATC
130 ACAGACATTCAATTATAATATGTTTAACCAAAAATATAAAAAAATTTAAATTAAAATCAATTATC
* * ** *
52697 GGATTACAAAACCATTTAAAGAGATTAATAAGGCTTCTGAGGGGAAGGGTGACTATAAATGCACT
195 GGATTACAAAACCATTAAAAGAGAGTAATAAGGCTTCTGAAAGGAAGGGTGACTATAAATGAACT
52762 TTTCTTACCAATGA
260 TTTCTTACCAATGA
52776 ATGTCTTTTT
Statistics
Matches: 238, Mismatches: 29, Indels: 12
0.85 0.10 0.04
Matches are distributed among these distances:
338 2 0.01
339 197 0.83
340 34 0.14
341 5 0.02
ACGTcount: A:0.39, C:0.13, G:0.14, T:0.33
Consensus pattern (339 bp):
AAAATTCAACTTAAAATGAACTATGAGAATATAAAACCACTTAAAGCGAGCAATAAGGCTTTTGA
AAGAATGGGTGACTATAAATGGACTTTTTCTACCAACGAATGGCTTTACTTCACGTTTCCTAAGA
CAGACATTCAATTATAATATGTTTAACCAAAAATATAAAAAAATTTAAATTAAAATCAATTATCG
GATTACAAAACCATTAAAAGAGAGTAATAAGGCTTCTGAAAGGAAGGGTGACTATAAATGAACTT
TTCTTACCAATGATGACCTTTTCTTCACATTTTCCAAGCCAGACATTCATTTATGATATTTTTTA
ATGAATAATATATT
Found at i:53529 original size:170 final size:170
Alignment explanation
Indices: 53154--53696 Score: 603
Period size: 170 Copynumber: 3.2 Consensus size: 170
53144 GCAATTCAAC
* * * *
53154 TTAAAATCAATTATGAGATTACAAAACTATTTGAAGTGCGTAATAAGGCTTTTGAAGGAATTGAT
1 TTAAAATCAATTATGAGATTACAAAACTATTTAAAGTGAGTAATAAGGCTTTTGAAGGAATAGGT
* * * * ** *
53219 GACAATAAATGAACTTTTCTT-ACTAGTGAATAGCTTTTTGTTCACGTTTCCTGAGGTAAACATT
66 GACTATAAATGAACTTTTCTTGAC-AATGAATGGCTTTTTCTTCACGTTTCCCAAGG-CAACATT
* * * *
53283 CAATTATAATCTGTTTTCACAAAAAATATAAAAAATTTTAAC
129 CAATTATAATATGTTTTAACAAAAAATACAAAAAATTTTAAA
* ** *
53325 TTAAAATCACTTATGAGATTACAGCACCATTTAAAGTGAGTAATAAGGCTTTTGAAGGAATAGGT
1 TTAAAATCAATTATGAGATTACAAAACTATTTAAAGTGAGTAATAAGGCTTTTGAAGGAATAGGT
* * * *
53390 GACTATAAATGAACTTTTCTTGGCAATG-ATGGCCTTTTCTTCACAG-TTCCCAATGCAGATATT
66 GACTATAAATGAACTTTTCTTGACAATGAATGGCTTTTTCTTCAC-GTTTCCCAAGGCA-ACATT
* *
53453 GAATTATAATATGTTTTAACAAAAAATACAAAACATTTTAAA
129 CAATTATAATATGTTTTAACAAAAAATACAAAAAATTTTAAA
* * * ** * *
53495 TTAAAATGAATTATGGGATTATAAAACTATTTAAAGTGAACAATAAGGCTTTTGAAAGAATGGGT
1 TTAAAATCAATTATGAGATTACAAAACTATTTAAAGTGAGTAATAAGGCTTTTGAAGGAATAGGT
* * * *
53560 GACTATAAATGGACTTTTCTTGTCAATGAATGGCTTTTTCTTTACGTTTTCCAAGGCAAGCATTC
66 GACTATAAATGAACTTTTCTTGACAATGAATGGCTTTTTCTTCACGTTTCCCAAGGCAA-CATTC
* ** *
53625 AATTATAATTTGTTTTAATC-AAAAATGTAAAAAA--TTCAA
130 AATTATAATATGTTTTAA-CAAAAAATACAAAAAATTTTAAA
* *
53664 TTGAAAATTAATTATGAGATTACAAAACCATTT
1 TT-AAAATCAATTATGAGATTACAAAACTATTT
53697 TGCTGCACGT
Statistics
Matches: 311, Mismatches: 53, Indels: 17
0.82 0.14 0.04
Matches are distributed among these distances:
169 7 0.02
170 167 0.54
171 135 0.43
172 2 0.01
ACGTcount: A:0.39, C:0.12, G:0.14, T:0.36
Consensus pattern (170 bp):
TTAAAATCAATTATGAGATTACAAAACTATTTAAAGTGAGTAATAAGGCTTTTGAAGGAATAGGT
GACTATAAATGAACTTTTCTTGACAATGAATGGCTTTTTCTTCACGTTTCCCAAGGCAACATTCA
ATTATAATATGTTTTAACAAAAAATACAAAAAATTTTAAA
Found at i:55457 original size:171 final size:171
Alignment explanation
Indices: 54653--55973 Score: 1186
Period size: 170 Copynumber: 7.8 Consensus size: 171
54643 TCATGTTTTT
* * * * *
54653 CAAGGTAAATATTCAATTATAATAT-ATTTAATCAAAAATGTAAAGCAATTTAACTTAAAATCAA
1 CAAGGCAAACATTCAATTATAATATGTTTTAATCAAAAATATAAAACAATTTAACTTAAAATCAA
* * * *
54717 TTATGAGATTACAAAACCATTTAAAGTGAGTAATAAGGCTTTTTAAGAAATTGGTGACTATAAAA
66 TTATGAGATTACAAAACCATTTAAAGTGAGTAATAAGGCTTTTGAAGGAATGGGTGACTATAAAT
* * * * *
54782 GAACTTTTCTTGCCAGTGAATGGCTTTTTATTCACGTTTTC
131 GAACTTTTCTTGCCAATGAATGCCTTTTTCTTCACATTTCC
* * ** * * * ** *
54823 CAAGGTAGACATTCTTTTATAATTTG-TTTCATGAAAAATGCAAAAC-ATTTCAATTTAAAATCA
1 CAAGGCAAACATTCAATTATAATATGTTTTAATCAAAAATATAAAACAATTT-AACTTAAAATCA
* * * * *
54886 ATTATGAGATTACAACACTATTAAAAATGAGTAATAAGG-TTTCTGAAGGAATGGGTGACAATAA
65 ATTATGAGATTACAAAACCATTTAAAGTGAGTAATAAGGCTTT-TGAAGGAATGGGTGACTATAA
* * *
54950 ATTAACTTTTCCTAG-CAATG-ATGGCC-TTTTGTTCACATTTCC
129 ATGAACTTTT-CTTGCCAATGAAT-GCCTTTTTCTTCACATTTCC
* * * * * * * * *
54992 CAAGTCAAACATTTAATTATGATCTATTTTAATGAAAAATATAAAAAAATTCAACTTAAAATGAA
1 CAAGGCAAACATTCAATTATAATATGTTTTAATCAAAAATATAAAACAATTTAACTTAAAATCAA
* * * * * *
55057 TTATGAGATCATAAAACCATTTAAAGTGAGCAATAAGGCTTTTGAAGTAATGGGTAACTATATAT
66 TTATGAGATTACAAAACCATTTAAAGTGAGTAATAAGGCTTTTGAAGGAATGGGTGACTATAAAT
* * * * * *
55122 GGACTTTTCCTACCAATGAATGGCTTTTACTTTACATTTCC
131 GAACTTTTCTTGCCAATGAATGCCTTTTTCTTCACATTTCC
* * * * * * *
55163 TAAGGCAAACATTCAATTATAATCTG-TTTAACCGAAACTATAAAAAAATTTAACTTAAAATTAA
1 CAAGGCAAACATTCAATTATAATATGTTTTAATCAAAAATATAAAACAATTTAACTTAAAATCAA
* * * *
55227 TTATCG-GATTACAAAACCATTTAAAGTGATTAATAAGACTTTTGAGGGGATGGGTGACTATAAA
66 TTAT-GAGATTACAAAACCATTTAAAGTGAGTAATAAGGCTTTTGAAGGAATGGGTGACTATAAA
* * * **
55291 TGCACTTTTCTTGCCACTAAATGCCTTTTTCTTCACATTTTT
130 TGAACTTTTCTTGCCAATGAATGCCTTTTTCTTCACATTTCC
** * * *
55333 TGAGGCAGACAGTCAATTATAATATGTTTTAA-CTAAAAATATAAAACAATTTAACTTAAAATTA
1 CAAGGCAAACATTCAATTATAATATGTTTTAATC-AAAAATATAAAACAATTTAACTTAAAATCA
* * * ** * * ** * *
55397 ATTATAAGATTATAAAACTATTTAAAACGAGTAACAAGGCTTTTAAAGGCTTGTGTGACTATAAG
65 ATTATGAGATTACAAAACCATTTAAAGTGAGTAATAAGGCTTTTGAAGGAATGGGTGACTATAAA
* * * ** *
55462 TGAACTTTT-TATACTAATGGATTACTTTTGCTTCACATTTCC
130 TGAACTTTTCT-TGCCAATGAATGCCTTTTTCTTCACATTTCC
* *** * * * * * * *
55504 AAAAAAAAACATTCAATTACAATATATTTTGATCAAAAATGTAAAGCAATTCAACTTAAAACCAA
1 CAAGGCAAACATTCAATTATAATATGTTTTAATCAAAAATATAAAACAATTTAACTTAAAATCAA
* ** * ** *
55569 TTATGAGATTACAAAACTATTTGCAGTGCGTAATAAGGCTTTTGAAGGAATTAGTGACAATAAAT
66 TTATGAGATTACAAAACCATTTAAAGTGAGTAATAAGGCTTTTGAAGGAATGGGTGACTATAAAT
* * * * *
55634 GAACTTTTTTTGTCAGTGAATGGCTTTTTCTTCACGTTTCC
131 GAACTTTTCTTGCCAATGAATGCCTTTTTCTTCACATTTCC
* * * *
55675 CAAGACAAACATTCAATTATAATCTGTTTTCA-CAAAAAATATAAAA-AACTTCAACTTAAAATC
1 CAAGGCAAACATTCAATTATAATATGTTTTAATC-AAAAATATAAAACAA-TTTAACTTAAAATC
*
55738 AATTATGAGATTACAACACCATTTAAAGTGAGTAATAAGGCTTTTGAAGGAATGGGTGACTATAA
64 AATTATGAGATTACAAAACCATTTAAAGTGAGTAATAAGGCTTTTGAAGGAATGGGTGACTATAA
* *
55803 ATGAACTTTTCTTAG-CAATG-ATGGCC-TTTTCTTCATATTTTC
129 ATGAACTTTTCTT-GCCAATGAAT-GCCTTTTTCTTCACATTTCC
* * * * * * * *
55845 CAAGGCAGATATTGAATTATAATATGTGTTAA-CAAAAAATGTAAAA-GATTTCAAATTAAAATG
1 CAAGGCAAACATTCAATTATAATATGTTTTAATC-AAAAATATAAAACAATTT-AACTTAAAATC
* * * *
55908 AATTATGAGATTATAAAACTC-TTTAAAGTGAGCAATAAGGCTTTTTAAGGAATGGGTGATTATA
64 AATTATGAGATTACAAAAC-CATTTAAAGTGAGTAATAAGGCTTTTGAAGGAATGGGTGACTATA
55972 AA
128 AA
55974 NNNNNNNNNN
Statistics
Matches: 922, Mismatches: 205, Indels: 48
0.78 0.17 0.04
Matches are distributed among these distances:
169 42 0.05
170 468 0.51
171 409 0.44
172 3 0.00
ACGTcount: A:0.40, C:0.12, G:0.13, T:0.35
Consensus pattern (171 bp):
CAAGGCAAACATTCAATTATAATATGTTTTAATCAAAAATATAAAACAATTTAACTTAAAATCAA
TTATGAGATTACAAAACCATTTAAAGTGAGTAATAAGGCTTTTGAAGGAATGGGTGACTATAAAT
GAACTTTTCTTGCCAATGAATGCCTTTTTCTTCACATTTCC
Found at i:55695 original size:512 final size:510
Alignment explanation
Indices: 54663--55966 Score: 1447
Period size: 512 Copynumber: 2.6 Consensus size: 510
54653 CAAGGTAAAT
* * * * **
54663 ATTCAATTATAATATATTTAATCAAAAATGTAAAGCAATTTAACTTAAAATCAATTATGAGATTA
1 ATTCAATTATAATCTGTTTAACCAAAAATATAAAAAAATTTAACTTAAAATCAATTATGAGATTA
* * * *
54728 CAAAACCATTTAAAGTGAGTAATAAGGCTTTTTAAGAAATTGGTGACTATAAAAGAACTTTTCTT
66 CAAAACCATTTAAAGTGAGTAATAAGGCTTTTGAAGGAATGGGTGACTATAAATGAACTTTTCTT
* * * * * ** * *
54793 GCCAGTGAATGGCTTTTTATTCACGTTTTCCAAGGTAGACATTCTTTTATAATTTG-TTTCA-TG
131 GCCAAT-AATGCCTTTTTCTTCACATTTTCCAAGGCAGACATTCAATTATAATATGTTTTAACT-
* * * * *
54856 AAAAATGCAAAACATTTCAATTTAAAATCAATTATGAGATTACAACACTATTAAAAATGAGTAAT
194 AAAAATGTAAAACATTTCAAATTAAAATCAATTATGAGATTATAAAACTATTTAAAATGAGTAAT
* * * *
54921 AAGG-TTTCTGAAGGAATGGGTGACAATAAATTAACTTTTCCTAGCAATGATGGCCTTTTGTTCA
259 AAGGCTTT-TAAAGGAATGGGTGACAATAAATGAACTTTTCATAGCAATGATGGACTTTTGTTCA
* *** * ** * *
54985 CATTTCCCAAGTCAAACATTTAATTATGATCTATTTTAATGAAAAATATAAAAAAATTCAACTTA
323 CATTTCCAAAAAAAAACATTCAATTACAATATATTTTAATCAAAAATATAAAAAAATTCAACTTA
** * * *
55050 AAATGAATTATGAGATCATAAAACCATTTAAAGTGAGCAATAAGGCTTTTGAAGTAATGGGTAAC
388 AAACCAATTATGAGATCACAAAACCATTTAAAGTGAGCAATAAGGCTTTTGAAGGAATGAGTAAC
* * * * * *
55115 TATATATGGACTTTTCCTACCAATGAATGGCTTTTACTTTACATTTCCTAAGGCAAAC
453 AATAAATGAACTTTTCCTACCAATGAATGGCTTTTACTTCACATTTCCCAAGACAAAC
* * *
55173 ATTCAATTATAATCTGTTTAACCGAAACTATAAAAAAATTTAACTTAAAATTAATTATCG-GATT
1 ATTCAATTATAATCTGTTTAACCAAAAATATAAAAAAATTTAACTTAAAATCAATTAT-GAGATT
* * * * *
55237 ACAAAACCATTTAAAGTGATTAATAAGACTTTTGAGGGGATGGGTGACTATAAATGCACTTTTCT
65 ACAAAACCATTTAAAGTGAGTAATAAGGCTTTTGAAGGAATGGGTGACTATAAATGAACTTTTCT
* *** *
55302 TGCCACTAAATGCCTTTTTCTTCACATTTTTTGAGGCAGACAGTCAATTATAATATGTTTTAACT
130 TGCCAAT-AATGCCTTTTTCTTCACATTTTCCAAGGCAGACATTCAATTATAATATGTTTTAACT
* * * * *
55367 AAAAATATAAAACAATTT-AACTTAAAATTAATTATAAGATTATAAAACTATTTAAAACGAGTAA
194 AAAAATGTAAAAC-ATTTCAAATTAAAATCAATTATGAGATTATAAAACTATTTAAAATGAGTAA
* ** * * * * *
55431 CAAGGCTTTTAAAGGCTTGTGTGACTATAAGTGAACTTTTTATA-CTAATGGAT-TACTTTTGCT
258 TAAGGCTTTTAAAGGAATGGGTGACAATAAATGAACTTTTCATAGC-AAT-GATGGACTTTTG-T
* * **
55494 TCACATTTCCAAAAAAAAACATTCAATTACAATATATTTTGATCAAAAATGTAAAGCAATTCAAC
320 TCACATTTCCAAAAAAAAACATTCAATTACAATATATTTTAATCAAAAATATAAAAAAATTCAAC
* * ** * * *
55559 TTAAAACCAATTATGAGATTACAAAACTATTTGCAGTGCGTAATAAGGCTTTTGAAGGAATTAGT
385 TTAAAACCAATTATGAGATCACAAAACCATTTAAAGTGAGCAATAAGGCTTTTGAAGGAATGAGT
* ** ** * * *
55624 GACAATAAATGAACTTTTTTTGTCAGTGAATGGCTTTTTCTTCACGTTTCCCAAGACAAAC
450 AACAATAAATGAACTTTTCCTACCAATGAATGGCTTTTACTTCACATTTCCCAAGACAAAC
* * * *
55685 ATTCAATTATAATCTGTTTTCACAAAAAATATAAAAAACTTCAACTTAAAATCAATTATGAGATT
1 ATTCAATTATAATCTG-TTTAACCAAAAATATAAAAAAATTTAACTTAAAATCAATTATGAGATT
*
55750 ACAACACCATTTAAAGTGAGTAATAAGGCTTTTGAAGGAATGGGTGACTATAAATGAACTTTTCT
65 ACAAAACCATTTAAAGTGAGTAATAAGGCTTTTGAAGGAATGGGTGACTATAAATGAACTTTTCT
* * * * *
55815 TAG-CAATGATGGCC-TTTTCTTCATATTTTCCAAGGCAGATATTGAATTATAATATGTGTTAAC
130 T-GCCAATAAT-GCCTTTTTCTTCACATTTTCCAAGGCAGACATTCAATTATAATATGTTTTAAC
* * * * * *
55878 AAAAAATGTAAAAGATTTCAAATTAAAATGAATTATGAGATTATAAAACTCTTTAAAGTGAGCAA
193 TAAAAATGTAAAACATTTCAAATTAAAATCAATTATGAGATTATAAAACTATTTAAAATGAGTAA
*
55943 TAAGGCTTTTTAAGGAATGGGTGA
258 TAAGGCTTTTAAAGGAATGGGTGA
55967 TTATAAANNN
Statistics
Matches: 651, Mismatches: 130, Indels: 24
0.81 0.16 0.03
Matches are distributed among these distances:
510 154 0.24
511 98 0.15
512 293 0.45
513 105 0.16
514 1 0.00
ACGTcount: A:0.39, C:0.13, G:0.13, T:0.35
Consensus pattern (510 bp):
ATTCAATTATAATCTGTTTAACCAAAAATATAAAAAAATTTAACTTAAAATCAATTATGAGATTA
CAAAACCATTTAAAGTGAGTAATAAGGCTTTTGAAGGAATGGGTGACTATAAATGAACTTTTCTT
GCCAATAATGCCTTTTTCTTCACATTTTCCAAGGCAGACATTCAATTATAATATGTTTTAACTAA
AAATGTAAAACATTTCAAATTAAAATCAATTATGAGATTATAAAACTATTTAAAATGAGTAATAA
GGCTTTTAAAGGAATGGGTGACAATAAATGAACTTTTCATAGCAATGATGGACTTTTGTTCACAT
TTCCAAAAAAAAACATTCAATTACAATATATTTTAATCAAAAATATAAAAAAATTCAACTTAAAA
CCAATTATGAGATCACAAAACCATTTAAAGTGAGCAATAAGGCTTTTGAAGGAATGAGTAACAAT
AAATGAACTTTTCCTACCAATGAATGGCTTTTACTTCACATTTCCCAAGACAAAC
Found at i:55715 original size:342 final size:338
Alignment explanation
Indices: 54663--55966 Score: 1152
Period size: 341 Copynumber: 3.8 Consensus size: 338
54653 CAAGGTAAAT
* * * * *
54663 ATTCAATTATAATAT-ATTTAATC-AAAAATGTAAAGCAATTTAACTTAAAATCAATTATGAGAT
1 ATTCAATTATAATCTGTTTTAA-CAAAAAATATAAA-AAATTCAACTTAAAATCAATTATGAGAT
* * * * *
54726 TACAAAACCATTTAAAGTGAGTAATAAGGCTTTTTAAGAAATTGGTGACTATAAAAGAACTTTTC
64 TATAAAACCATTTAAAGTGAGTAATAAGGCTTTTGAAGGAATGGGTGACTAT-AATGAACTTTTC
* * * * * *** * ** * * *
54791 TTGCCAGTGAATGGCTTTTTA-TTCACGTTTTCC-AAGGTAGACATTCTTTTATAATTTGTTTCA
128 ATACCAATGAATGAC-TTTTACTTCAC-ATTTCCAAAAAAAAACATTCAATTACAATATGTTTAA
** * * * * * *
54854 TGAAAAATGCAAAACATTTCAATTTAAAATCAATTATGAGATTACAACACTATTAAAAATGAGTA
191 CCAAAAATGTAAAACAATTCAACTTAAAATCAATTATGAGATTACAAAACTATTTAAAGTGAGTA
* * * *
54919 ATAAGG-TTTCTGAAGGAATGGGTGACAATAAATTAACTTTTCCTAGCAATG-ATGGCCTTTTGT
256 ATAAGGCTTT-TGAAGGAATGGGTGACAATAAATGAACTTTT-CTTGCAATGAATGGCTTTTTCT
*
54982 TCACATTTCCCAAGTCAAAC
319 TCACATTTCCCAAGACAAAC
* * * ** * *
55002 ATTTAATTATGATCTATTTTAATGAAAAATATAAAAAAATTCAACTTAAAATGAATTATGAGATC
1 ATTCAATTATAATCTGTTTTAACAAAAAATAT-AAAAAATTCAACTTAAAATCAATTATGAGATT
* * * * *
55067 ATAAAACCATTTAAAGTGAGCAATAAGGCTTTTGAAGTAATGGGTAACTATATATGGACTTTTCC
65 ATAAAACCATTTAAAGTGAGTAATAAGGCTTTTGAAGGAATGGGTGACTATA-ATGAACTTTTCA
* * * *** * * *
55132 TACCAATGAATGGCTTTTACTTTACATTTCCTAAGGCAAACATTCAATTATAATCTGTTTAACCG
129 TACCAATGAATGACTTTTACTTCACATTTCCAAAAAAAAACATTCAATTACAATATGTTTAACCA
* * * * * * *
55197 AAACTATAAAAAAATTTAACTTAAAATTAATTATCG-GATTACAAAACCATTTAAAGTGATTAAT
194 AAAATGTAAAACAATTCAACTTAAAATCAATTAT-GAGATTACAAAACTATTTAAAGTGAGTAAT
* * * * * * * *
55261 AAGACTTTTGAGGGGATGGGTGACTATAAATGCACTTTTCTTGCCACTAAATGCCTTTTTCTTCA
258 AAGGCTTTTGAAGGAATGGGTGACAATAAATGAACTTTTCTTG-CAATGAATGGCTTTTTCTTCA
**** * *
55326 CATTTTTTGAGGCAGAC
322 CATTTCCCAAGACAAAC
* * * * * *
55343 AGTCAATTATAATATGTTTTAACTAAAAATATAAAACAATTTAACTTAAAATTAATTATAAGATT
1 ATTCAATTATAATCTGTTTTAACAAAAAATATAAAA-AATTCAACTTAAAATCAATTATGAGATT
* ** * * ** * *
55408 ATAAAACTATTTAAAACGAGTAACAAGGCTTTTAAAGGCTTGTGTGACTATAAGTGAACTTTTTA
65 ATAAAACCATTTAAAGTGAGTAATAAGGCTTTTGAAGGAATGGGTGACTATAA-TGAACTTTTCA
* * * * * * *
55473 TACTAATGGATTACTTTTGCTTCACATTTCCAAAAAAAAACATTCAATTACAATATATTTTGATC
129 TACCAATGAATGACTTTTACTTCACATTTCCAAAAAAAAACATTCAATTACAATAT-GTTTAACC
* * ** *
55538 AAAAATGTAAAGCAATTCAACTTAAAACCAATTATGAGATTACAAAACTATTTGCAGTGCGTAAT
193 AAAAATGTAAAACAATTCAACTTAAAATCAATTATGAGATTACAAAACTATTTAAAGTGAGTAAT
** * *
55603 AAGGCTTTTGAAGGAATTAGTGACAATAAATGAACTTTTTTTGTCAGTGAATGGCTTTTTCTTCA
258 AAGGCTTTTGAAGGAATGGGTGACAATAAATGAACTTTTCTTG-CAATGAATGGCTTTTTCTTCA
*
55668 CGTTTCCCAAGACAAAC
322 CATTTCCCAAGACAAAC
*
55685 ATTCAATTATAATCTGTTTTCACAAAAAATATAAAAAACTTCAACTTAAAATCAATTATGAGATT
1 ATTCAATTATAATCTGTTTTAACAAAAAATATAAAAAA-TTCAACTTAAAATCAATTATGAGATT
* * *
55750 ACAACACCATTTAAAGTGAGTAATAAGGCTTTTGAAGGAATGGGTGACTATAAATGAACTTTTCT
65 ATAAAACCATTTAAAGTGAGTAATAAGGCTTTTGAAGGAATGGGTGACTAT-AATGAACTTTTCA
* * * *** * * * *
55815 TAGCAATG-ATGGCCTTTT-CTTCATATTTTCC-AAGGCAGATATTGAATTATAATATGTGTTAA
129 TACCAATGAAT-GACTTTTACTTCACA-TTTCCAAAAAAAAACATTCAATTACAATATGT-TTAA
* * * * * * * *
55877 CAAAAAATGTAAAAGATTTCAAATTAAAATGAATTATGAGATTATAAAACTCTTTAAAGTGAGCA
191 CCAAAAATGTAAAACAATTCAACTTAAAATCAATTATGAGATTACAAAACTATTTAAAGTGAGTA
*
55942 ATAAGGCTTTTTAAGGAATGGGTGA
256 ATAAGGCTTTTGAAGGAATGGGTGA
55967 TTATAAANNN
Statistics
Matches: 761, Mismatches: 185, Indels: 36
0.77 0.19 0.04
Matches are distributed among these distances:
339 26 0.03
340 218 0.29
341 276 0.36
342 239 0.31
343 2 0.00
ACGTcount: A:0.39, C:0.13, G:0.13, T:0.35
Consensus pattern (338 bp):
ATTCAATTATAATCTGTTTTAACAAAAAATATAAAAAATTCAACTTAAAATCAATTATGAGATTA
TAAAACCATTTAAAGTGAGTAATAAGGCTTTTGAAGGAATGGGTGACTATAATGAACTTTTCATA
CCAATGAATGACTTTTACTTCACATTTCCAAAAAAAAACATTCAATTACAATATGTTTAACCAAA
AATGTAAAACAATTCAACTTAAAATCAATTATGAGATTACAAAACTATTTAAAGTGAGTAATAAG
GCTTTTGAAGGAATGGGTGACAATAAATGAACTTTTCTTGCAATGAATGGCTTTTTCTTCACATT
TCCCAAGACAAAC
Done.