Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018402985.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_650.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2189
ACGTcount: A:0.24, C:0.06, G:0.09, T:0.21

Warning! 880 characters in sequence are not A, C, G, or T


Found at i:1875 original size:171 final size:171

Alignment explanation


    Indices: 1510--2189  Score: 551
    Period size: 171  Copynumber: 4.0  Consensus size: 171

       1500 NNNNNNNNNN

                                      *    *   **                     *  *   
       1510 TTCGAAGGCATGGGTGACTATAAATGAACTTTTCTTGCCAATGGATATCTATTTT-TTCATGTTT
          1 TTCGAAGGCATGGGTGACTATAAATGGACTTATCTCACCAATGGATATC-ATTTTCTTTATATTT

            * **  **                  *                    **********  *    *
       1574 CTCAAGATATAA-ATTCAATTATAATATGTTTTAATAAAAAATATAANNNNNNNNNNCTTAAAAT
         65 TTTGAGGCA-AATATTCAATTATAATCTGTTTTAATAAAAAATATAAAAAACTTCAACTCAAAAC

                   *  *                   *             
       1638 CAATTA-AAGGTTATAAAAAC-ATTTAAAGTGAGTAATAAGGCT
        129 CAATTATGAGATTA-AAAAACAATTTAAAGCGAGTAATAAGGCT

                             *       *                                *      
       1680 TTCGAAGGCATGGGTGATTATAAATAGACTTATCTCACCAATGGATATCATTTTCTTTTTATTTT
          1 TTCGAAGGCATGGGTGACTATAAATGGACTTATCTCACCAATGGATATCATTTTCTTTATATTTT

               *  * *     *             *                    *               
       1745 TTGGGGGAGATATTTAATTATAATCTGTATTAATAAAAAATATAAAAAAGTTCAACTCAAAACCA
         66 TTGAGGCAAATATTCAATTATAATCTGTTTTAATAAAAAATATAAAAAACTTCAACTCAAAACCA

                        *             *              
       1810 ATTATGAGATTATAAAACAATTTAAATCGAGTAATAAGGCT
        131 ATTATGAGATTAAAAAACAATTTAAAGCGAGTAATAAGGCT

             *      *                      *   *                  *          
       1851 TCCGAAGGTATGGGTGACTATAAATGGACTTTTCTTACCAATGGATATCATTTTGTTTATATTTT
          1 TTCGAAGGCATGGGTGACTATAAATGGACTTATCTCACCAATGGATATCATTTTCTTTATATTTT

                      **            *                *       **********      
       1916 TTGAGGCAAACGTTCAATTATAATTTGTTTTAATAAAAAATGTAAAAAANNNNNNNNNNAAACCA
         66 TTGAGGCAAATATTCAATTATAATCTGTTTTAATAAAAAATATAAAAAACTTCAACTCAAAACCA

                              *            **        
       1981 ATTATGAGATTAAAAAACTATTTAAAGCGAGCCATAAGGCT
        131 ATTATGAGATTAAAAAACAATTTAAAGCGAGTAATAAGGCT

               *                        **********           *       * *    *
       2022 TTCTAAGGCATGGGTGACTATAAATGGANNNNNNNNNNCAATGGATATCTTTTTCTTCACATTTC
          1 TTCGAAGGCATGGGTGACTATAAATGGACTTATCTCACCAATGGATATCATTTTCTTTATATTTT

                 **      *                      *                    *     * 
       2087 TTGAGATAAATATACAATTATAATCTGTTTTAATAATAAATAT-AAAAACTTCAACTTAAAACTA
         66 TTGAGGCAAATATTCAATTATAATCTGTTTTAATAAAAAATATAAAAAACTTCAACTCAAAACCA

                             **                    
       2151 ATTATGAGATTAAAAAATTATTTAAAGCGAGTAATAAGG
        131 ATTATGAGATTAAAAAACAATTTAAAGCGAGTAATAAGG


Statistics
Matches: 398,  Mismatches: 108, Indels: 8
        0.77            0.21        0.02

Matches are distributed among these distances:
 169    6  0.02
 170  146  0.37
 171  246  0.62

ACGTcount: A:0.38, C:0.10, G:0.13, T:0.34


Consensus pattern (171 bp):   
TTCGAAGGCATGGGTGACTATAAATGGACTTATCTCACCAATGGATATCATTTTCTTTATATTTT
TTGAGGCAAATATTCAATTATAATCTGTTTTAATAAAAAATATAAAAAACTTCAACTCAAAACCA
ATTATGAGATTAAAAAACAATTTAAAGCGAGTAATAAGGCT
Done.