Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018402990.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_657.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4506
ACGTcount: A:0.24, C:0.09, G:0.08, T:0.24

Warning! 1594 characters in sequence are not A, C, G, or T


Found at i:3052 original size:171 final size:167

Alignment explanation


    Indices: 2845--3342  Score: 392
    Period size: 171  Copynumber: 2.9  Consensus size: 167

       2835 TAAATGATTT

                                      *  *                       *           
       2845 TATAATCTCATAATTGATTTTAAGTTTAACTTTTTTATATGTTTCTTTAAAACGGACAATAATTA
          1 TATAATCTCATAATTGATTTTAAGTTGAATTTTTTTATAT-TTTCTTTAAAACAGACAATAATTA

                       *       *                                             
       2910 AATGTCTAACTCGAGAAAAGTGTAGAAAAAGCCATTGATTGAGAAAAAAAGTTCATTTATAGTCA
         65 AATGTCTAACTAGAGAAAAATGTAGAAAAAGCCATTGATTGAGAAAAAAAGTTCATTTATAGTCA

              *                                ******
       2975 CCCATTCTTTCAAAAGGCTTATTACTCGCTTTNNNNNNNNN
        130 CCTATTCTTTCAAAAGGCTTATTACTCGCTTT---AAATGA

            *                    *               *     *        *    **     *
       3016 NATAATCTCATAATTGATTTTCAGTTGAATTTTTTTACATTTTTTGTTAAAATAGACTCTAATTC
          1 TATAATCTCATAATTGATTTTAAGTTGAATTTTTTTATATTTTCT-TTAAAACAGACAATAATTA

             *      *  *       *   * *      *    *             * * *   *     
       3081 ATTGTCTACCTTGAGAAACCA-GCAAAAAAAGTCATTCATTGAGAAAAAAAATCCTTTTTTAGTC
         65 AATGTCTAACTAGAGAAA-AATGTAGAAAAAGCCATTGATTGAGAAAAAAAGTTCATTTATAGTC

              *         *    *           *         
       3145 ACTTATTCTTTCGAAAGTCTTATTACTCGGTTTAAATGA
        129 ACCTATTCTTTCAAAAGGCTTATTACTCGCTTTAAATGA

                *******                         *           *                
       3184 TNNNNNNNNNNCATAATTGATTTTAAGTTGAATTTTGTTATATTTTTCCTTAAAACAGACAATAA
          1 T---ATAATCTCATAATTGATTTTAAGTTGAATTTTTTTATA-TTTTCTTTAAAACAGACAATAA

              *     *  *                                   *  *              
       3249 TTGAATGTTTATCTAGA-AAAACATGTAGAAACAA-CCATTGATTGACAAGAAAAG-TCTATTTA
         62 TTAAATGTCTAACTAGAGAAAA-ATGTAGAAA-AAGCCATTGATTGAGAAAAAAAGTTC-ATTTA

            *                               
       3311 GAGTCACCTATTCTTTCAAAAGGCTTATTACT
        124 TAGTCACCTATTCTTTCAAAAGGCTTATTACT

       3343 NNNNNNNNNN


Statistics
Matches: 246,  Mismatches: 71, Indels: 20
        0.73            0.21        0.06

Matches are distributed among these distances:
 170    9  0.04
 171  231  0.94
 172    6  0.02

ACGTcount: A:0.35, C:0.13, G:0.11, T:0.37


Consensus pattern (167 bp):   
TATAATCTCATAATTGATTTTAAGTTGAATTTTTTTATATTTTCTTTAAAACAGACAATAATTAA
ATGTCTAACTAGAGAAAAATGTAGAAAAAGCCATTGATTGAGAAAAAAAGTTCATTTATAGTCAC
CTATTCTTTCAAAAGGCTTATTACTCGCTTTAAATGA
Done.