Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018402993.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_66.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3239
ACGTcount: A:0.16, C:0.05, G:0.06, T:0.15

Warning! 1874 characters in sequence are not A, C, G, or T


Found at i:1107 original size:169 final size:171

Alignment explanation


    Indices: 824--1196  Score: 427
    Period size: 169  Copynumber: 2.2  Consensus size: 171

        814 NNNNNATAAC

                                                   *                         
        824 CTGTTTTAATAAAAAATATAAAAAAATTCAACTTAAAATCAATTATGAGACAAGAAAATCATTTA
          1 CTGTTTTAATAAAAAATATAAAAAAATTCAACTTAAAATAAATTATGAGACAAGAAAATCATTTA

                *           *   *         *         * *                      
        889 AAGCCAGTAATAAGGCTTTTGAAGGAATGGGTGACTACAACTGGACTTTTCTTAG-CAATGAATA
         66 AAGCAAGTAATAAGGCCTTTAAAGGAATGGATGACTACAAATAGACTTTTCTT-GCCAATGAATA

                                                     *  
        953 CTTTTATCTTCACGTTT-CTCAAGATAGA-TGGTCAATTATTGT
        130 CTTTTATCTTCACGTTTAC-CAAGATAGACT-GTCAATTATAGT

                                           *              *   ** *           
        995 CTGTTTTAAT-AAAAA-ATAAAAAAATTCAAGTTAAAATAAATTATTAGATTATAAAA-CTATTT
          1 CTGTTTTAATAAAAAATATAAAAAAATTCAACTTAAAATAAATTATGAGACAAGAAAATC-ATTT

                *                      *           *                         
       1057 AAAGGAAGTAATAAGGCCTTTAAAGGATTGAGATG-CTATAAATAGACTTTTCTTGCCAATGAAT
         65 AAAGCAAGTAATAAGGCCTTTAAAGGAATG-GATGACTACAAATAGACTTTTCTTGCCAATGAAT

            *     *       *         *      * *         
       1121 GCTTTTTTCTTCACTTTTACCAAGGTAGACTTTTAATTATAGT
        129 ACTTTTATCTTCACGTTTACCAAGATAGACTGTCAATTATAGT

                      *      *          *    
       1164 CTGTTTTAATGAAAAATGTAAAAAAATTGAACT
          1 CTGTTTTAATAAAAAATATAAAAAAATTCAACT

       1197 NNNNNNNNNN


Statistics
Matches: 170,  Mismatches: 25, Indels: 14
        0.81            0.12        0.07

Matches are distributed among these distances:
 168    2  0.01
 169  130  0.76
 170   15  0.09
 171   23  0.14

ACGTcount: A:0.40, C:0.11, G:0.13, T:0.35


Consensus pattern (171 bp):   
CTGTTTTAATAAAAAATATAAAAAAATTCAACTTAAAATAAATTATGAGACAAGAAAATCATTTA
AAGCAAGTAATAAGGCCTTTAAAGGAATGGATGACTACAAATAGACTTTTCTTGCCAATGAATAC
TTTTATCTTCACGTTTACCAAGATAGACTGTCAATTATAGT
Done.