Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018403006.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_673.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  32088

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
673--1094
172
2.5
172
77
1
445
37
14
10
35
1.81
3875--3901
13
2.1
13
100
0
54
40
14
7
37
1.74
12168--13034
171
5.1
169
74
9
659
35
13
14
35
1.86
13143--14392
171
7.4
168
76
7
1016
35
12
14
36
1.85
13155--14392
342
3.7
335
79
8
1118
35
12
14
36
1.85
17787--17832
21
2.2
21
100
0
92
26
17
19
36
1.94
17852--18428
171
3.4
171
76
8
606
37
14
12
35
1.84
17862--18499
171
3.7
170
75
10
554
37
13
13
35
1.84
17866--18525
342
1.9
339
86
2
937
36
13
13
36
1.84
17812--18640
342
2.4
340
81
4
841
36
13
13
35
1.85
18636--19168
172
3.1
172
80
1
613
36
10
13
39
1.79
25358--26104
171
4.4
172
78
6
680
36
12
13
36
1.83
27069--27396
172
2.0
161
79
12
342
35
12
14
35
1.83
30835--31323
160
3.0
159
77
12
443
34
14
13
37
1.85
30991--31399
172
2.4
171
82
5
479
35
14
11
38
1.82
31582--32084
171
2.9
170
80
6
482
37
13
12
36
1.81

Tables:   1

The End!