Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018403011.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_678.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 9390
ACGTcount: A:0.22, C:0.07, G:0.08, T:0.22

Warning! 3899 characters in sequence are not A, C, G, or T


Found at i:8086 original size:172 final size:170

Alignment explanation


    Indices: 7682--8086  Score: 404
    Period size: 172  Copynumber: 2.4  Consensus size: 170

       7672 GCAGGCTTAT

                       *                                                 *   
       7682 AATTATAATCTGTTTTAAAGAAAAATATAAAAAAATTT-GACTTAAAATCAATTATGAGATAATA
          1 AATTATAATCTATTTTAAA-AAAAATATAAAAAAATTTAG-CTTAAAATCAATTATGAGATTATA

                         *                *                                  
       7746 AAACTATTTAAAATGGGTAAAAAGGCTTTTTAAGGAATGGGTAACAATAAATAGACTTTTCTTCT
         64 AAACTATTTAAAACGGGTAAAAAGGCTTTTAAAGGAATGGGTAACAATAAATAGACTTTTCTTCT

                   *        * *  *      **    *       
       7811 CAATGAATAGCTTTTTTTGCATGTTTCCTGAGGTGGACATTC
        129 CAATGAACAGCTTTTTCTACACGTTTCCCAAGGTAGACATTC

               **********                *           *        *              
       7853 AATNNNNNNNNNNTTTAACAAAAAA-ATGTAAAAAATTTCAACTTAAAATTAATTATGAGATTAT
          1 AATTATAATCTATTTTAA-AAAAAATAT-AAAAAAATTT-AGCTTAAAATCAATTATGAGATTAT

                          *  *    *                     ** *      *          
       7917 AAAAAC-ATTTAAACCGTGTAATAAGGCTTTTAAAGGAATGGGTGGCTATAAATGGACTTTT-TC
         63 -AAAACTATTTAAAACGGGTAAAAAGGCTTTTAAAGGAATGGGTAACAATAAATAGACTTTTCT-

               *                                          
       7980 TCTTAATGAACAGGCTTTTTCTACACGTTTCCCAAGGTAGACATTC
        126 TCTCAATGAACA-GCTTTTTCTACACGTTTCCCAAGGTAGACATTC

                   *                                                     
       8026 AATTATAGTCTATTTTAATAAAAAATATAAAAAAATTTAGCTTAAAATCAATTATGAGATT
          1 AATTATAATCTATTTTAA-AAAAAATATAAAAAAATTTAGCTTAAAATCAATTATGAGATT

       8087 NNNNNNNNNN


Statistics
Matches: 181,  Mismatches: 45, Indels: 15
        0.75            0.19        0.06

Matches are distributed among these distances:
 170    2  0.01
 171   23  0.13
 172   99  0.55
 173   55  0.30
 174    2  0.01

ACGTcount: A:0.40, C:0.10, G:0.13, T:0.34


Consensus pattern (170 bp):   
AATTATAATCTATTTTAAAAAAAATATAAAAAAATTTAGCTTAAAATCAATTATGAGATTATAAA
ACTATTTAAAACGGGTAAAAAGGCTTTTAAAGGAATGGGTAACAATAAATAGACTTTTCTTCTCA
ATGAACAGCTTTTTCTACACGTTTCCCAAGGTAGACATTC
Done.