Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018403015.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_682.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 849

Length: 1416
ACGTcount: A:0.30, C:0.09, G:0.10, T:0.28

Warning! 327 characters in sequence are not A, C, G, or T


Found at i:1380 original size:39 final size:40

Alignment explanation


    Indices: 1325--1404  Score: 117
    Period size: 39  Copynumber: 2.0  Consensus size: 40

       1315 NNTTTTAACT

                               *               *    
       1325 AAAAAAGTGAAAAAAAATTGAACATAAAATCAATTTTGAG
          1 AAAAAAGTGAAAAAAAATTCAACATAAAATCAATTATGAG

                     *             *                
       1365 AAAAAA-TGTAAAAAAATTCAACTTAAAATCAATTATGAG
          1 AAAAAAGTGAAAAAAAATTCAACATAAAATCAATTATGAG

             
       1404 A
          1 A

       1405 TTATAAAACC


Statistics
Matches: 36,  Mismatches: 4, Indels: 1
        0.88            0.10        0.02

Matches are distributed among these distances:
  39   30  0.83
  40    6  0.17

ACGTcount: A:0.60, C:0.06, G:0.10, T:0.24


Consensus pattern (40 bp):   
AAAAAAGTGAAAAAAAATTCAACATAAAATCAATTATGAG
Done.