Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018403017.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_684.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 828

Length: 1380
ACGTcount: A:0.28, C:0.08, G:0.09, T:0.25

Warning! 424 characters in sequence are not A, C, G, or T


Found at i:309 original size:169 final size:159

Alignment explanation


    Indices: 21--325  Score: 330
    Period size: 169  Copynumber: 1.9  Consensus size: 159

         11 AATTATGAGT

                                                                             
         21 TTATAAAAATATTTAAAGCAAGTAATAAGGCTTTTGAAGGCATGAGCTACTATAAATGGACTTTT
          1 TTATAAAAATATTTAAAGCAAGTAATAAGGCTTTTGAAGGCATGAGCTACTATAAATGGACTTTT

                     *                **   **   *   *              * *       
         86 CTTACCAATGGATATCATTTTCTTCATTTTTGTCAAGGCAGACATTCAATTATAATCTGTTTTAA
         66 CTTACCAATAGATATCATTTTCTTCACGTTTCCCAAAGCAAACATTCAATTATAACCGGTTTTAA

                                                   
        151 TAAAAATATAAAAAATTTAAACTAAAATNNNNNNNNNNG
        131 TAAAAATATAAAAAATTTAAACTAAAAT----------G

                                                      *     *                
        190 TTAT-AAAATCATTTAAAGCAAGTAATACA-GCTTTTGAAGGTATG-GGTAACTATAAATGGA-T
          1 TTATAAAAAT-ATTTAAAGCAAGTAATA-AGGCTTTTGAAGGCATGAGCT-ACTATAAATGGACT

                   *            *                              *             
        251 ATTTCTTGCCAATAGATATCTTTTTCTTCACGTTTCCCAAAGCAAACATTCGATTATAACCGGTT
         63 -TTTCTTACCAATAGATATCATTTTCTTCACGTTTCCCAAAGCAAACATTCAATTATAACCGGTT

                      
        316 TTAATAAAAA
        127 TTAATAAAAA

        326 AATATTAAAA


Statistics
Matches: 118,  Mismatches: 14, Indels: 8
        0.84            0.10        0.06

Matches are distributed among these distances:
 168    8  0.07
 169  109  0.92
 170    1  0.01

ACGTcount: A:0.37, C:0.12, G:0.12, T:0.35


Consensus pattern (159 bp):   
TTATAAAAATATTTAAAGCAAGTAATAAGGCTTTTGAAGGCATGAGCTACTATAAATGGACTTTT
CTTACCAATAGATATCATTTTCTTCACGTTTCCCAAAGCAAACATTCAATTATAACCGGTTTTAA
TAAAAATATAAAAAATTTAAACTAAAATG
Done.