Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018397830.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_1132.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 13304
ACGTcount: A:0.22, C:0.07, G:0.07, T:0.21

Warning! 5712 characters in sequence are not A, C, G, or T


Found at i:8979 original size:171 final size:162

Alignment explanation


    Indices: 8682--9069  Score: 370
    Period size: 171  Copynumber: 2.3  Consensus size: 162

       8672 TTTTTTAATT

                  *                           *                              
       8682 AAAATGAAAAAAAAATTCAACTTAAAATGAATTATGAGATTATAAAA-CTATTTAAATGAGTAAT
          1 AAAATGTAAAAAAAATTCAACTTAAAATGAATTACGAGATTATAAAATC-A-TTAAA--AG---T

                              *            *             *       *           
       8746 AAGGCTTTTGAAGAAATGGGTGACTATAAATTGACCTTTTTTACCTGTAAATGGCTTTTTCTTCA
         59 AA---TTTTGAAGAAATGAGTGACTATAAATGGACCTTTTTTACCAGTAAATGACTTTTTCTTCA

             *                *                         
       8811 CGTTTTTC-AAG-ATAGACATTCAATTATAGCCTGTTTCAACCA
        121 CATTTTTCAAAGCA-A-AAATTCAATTATAGCCTGTTTCAACCA

               *              *               *                              
       8853 AAAGTGT-AAAAAAATTCGACTTAAAATGAATTATGAGATTATAAAATCATTAAAAGTAANNNNN
          1 AAAATGTAAAAAAAATTCAACTTAAAATGAATTACGAGATTATAAAATCATTAAAAGTAA-----

                         *                     *            *              **
       8917 NNNNNTTTTGAAGGAATGAGTGACTATAAATGGACTTTTTTTACCAGTGAATGACTTTTTCTTTG
         61 -----TTTTGAAGAAATGAGTGACTATAAATGGACCTTTTTTACCAGTAAATGACTTTTTCTTCA

                                *         *         * 
       8982 CATTTTTCAAAGCAAAAATTTAATTATAGCTTGTTTCAACTA
        121 CATTTTTCAAAGCAAAAATTCAATTATAGCCTGTTTCAACCA

                                        *                 
       9024 AAAATGTAAAAAAAATTCAACTTAAAATTAATTACGAGATTATAAA
          1 AAAATGTAAAAAAAATTCAACTTAAAATGAATTACGAGATTATAAA

       9070 NNNNNNNNNN


Statistics
Matches: 182,  Mismatches: 24, Indels: 21
        0.80            0.11        0.09

Matches are distributed among these distances:
 164    3  0.02
 167    2  0.01
 169    5  0.03
 170   39  0.21
 171   93  0.51
 172   39  0.21
 173    1  0.01

ACGTcount: A:0.41, C:0.10, G:0.12, T:0.34


Consensus pattern (162 bp):   
AAAATGTAAAAAAAATTCAACTTAAAATGAATTACGAGATTATAAAATCATTAAAAGTAATTTTG
AAGAAATGAGTGACTATAAATGGACCTTTTTTACCAGTAAATGACTTTTTCTTCACATTTTTCAA
AGCAAAAATTCAATTATAGCCTGTTTCAACCA
Done.