Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018403026.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_694.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4367
ACGTcount: A:0.23, C:0.07, G:0.09, T:0.23

Warning! 1628 characters in sequence are not A, C, G, or T


Found at i:507 original size:173 final size:171

Alignment explanation


    Indices: 28--509  Score: 617
    Period size: 171  Copynumber: 2.8  Consensus size: 171

         18 CGTTTCTTGT

                    *   *   *   *        *      *       *            *       
         28 GGTAGACAATCACTTACAGTCTGTTTTAACAAAAAATA-TAAAATAATTCAACTTAATATCAATT
          1 GGTAGACATTCAATTATAGTATGTTTTAATAAAAAAAAGTAAAAAAATTCAACTTAAAATCAATT

             *             **                                 *              
         92 ACGAGATTATAAAACCGTTTAAAGCGAGTAATAAGCTTTTTGAAGGAATGGGTGACTCTAAATGG
         66 ATGAGATTATAAAACTATTTAAAGCGAGTAATAAGCTTTTTGAAGGAAT-AGTGACTCTAAATGG

            *     *                       * ** **     
        157 GCTTTTTTTGTCAAAGAATGCTTGTTTCTTTATGTTTCTCAA
        130 ACTTTTCTTGTCAAAGAATGCTTGTTTCTTCACATGCCTCAA

              *                   *        *     *        *                  
        199 GGAAGACATTCAATTATAGTATCTTTTAAT-CAAAAACGTAAAAAACTTCAACTTAAAATCAATT
          1 GGTAGACATTCAATTATAGTATGTTTTAATAAAAAAAAGTAAAAAAATTCAACTTAAAATCAATT

                      *   *                                                  
        263 ATGAGATTATTAAATTATTTAAAGCGAGTAATAAGCTTTTTGAAGGAATGAGTGACTCTAAATGG
         66 ATGAGATTATAAAACTATTTAAAGCGAGTAATAAGCTTTTTGAAGGAAT-AGTGACTCTAAATGG

                          *                         * 
        328 ACTTTTCTTGTCAATGAATGCTTGTTTCTTCACATGCCTCGA
        130 ACTTTTCTTGTCAAAGAATGCTTGTTTCTTCACATGCCTCAA

                                                                             
        370 GGTAGACATTCAATTATAGTATGTTTTAATAAAAAAAAGTAAAAAAATTCAACTTAAAAATCAAT
          1 GGTAGACATTCAATTATAGTATGTTTTAATAAAAAAAAGTAAAAAAATTCAACTT-AAAATCAAT

                                *       *        *                    *      
        435 TATGAGATTATAAAACTATTAAAAGCGAATAATAAGCCTTTTGAAGGAATATGTGACTATAAATG
         65 TATGAGATTATAAAACTATTTAAAGCGAGTAATAAGCTTTTTGAAGGAATA-GTGACTCTAAATG

            *         
        500 TACTTTTCTT
        129 GACTTTTCTT

        510 CTCATCAATG


Statistics
Matches: 267,  Mismatches: 40, Indels: 6
        0.85            0.13        0.02

Matches are distributed among these distances:
 170    4  0.01
 171  166  0.62
 172   22  0.08
 173   75  0.28

ACGTcount: A:0.39, C:0.12, G:0.14, T:0.35


Consensus pattern (171 bp):   
GGTAGACATTCAATTATAGTATGTTTTAATAAAAAAAAGTAAAAAAATTCAACTTAAAATCAATT
ATGAGATTATAAAACTATTTAAAGCGAGTAATAAGCTTTTTGAAGGAATAGTGACTCTAAATGGA
CTTTTCTTGTCAAAGAATGCTTGTTTCTTCACATGCCTCAA
Done.