Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018403030.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_698.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 12946
ACGTcount: A:0.22, C:0.08, G:0.08, T:0.22

Warning! 5174 characters in sequence are not A, C, G, or T


Found at i:8119 original size:172 final size:172

Alignment explanation


    Indices: 7913--8330  Score: 450
    Period size: 172  Copynumber: 2.4  Consensus size: 172

       7903 GATAGACATC

                   *  *                                                    **
       7913 CAATTATCGTTTGTTTT-ATCTAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTNN
          1 CAATTATAGTATGTTTTAAT-TAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTAT

            ********                                             * *         
       7977 NNNNNNNNTTAAAGCGAGTAATAAGGCTTTTGAAGGAATGGGTGACTATAAATGGGCTTTTTCTC
         65 AAAATCATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATGGGTGACTATAAATAGACTTTTTCTC

                                               *        
       8042 CTCAATGAATGACTTTTTTTACACGTTTC-TCAAGGCAAGTATT
        130 CTCAATGAATGACTTTTTTTACACGTTTCGT-AAGCCAAGTATT

                                       *                  *                  
       8085 CAATTATAGTATGTTTTAATTAAAAATATAAAAAAATTCAACTTAAGATCAATTATGAGATTATA
          1 CAATTATAGTATGTTTTAATTAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATA

                     **********             *                      *         
       8150 AAATCATTTNNNNNNNNNNATAAGGCTTTTGATGGAATGGGTGACTATAAATAGATTTTTTCTCC
         66 AAATCATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATGGGTGACTATAAATAGACTTTTTCTCC

                                                *     
       8215 TCAATGAATGACTTTTTTTACACGTTTCGTAAGCCAGGTATT
        131 TCAATGAATGACTTTTTTTACACGTTTCGTAAGCCAAGTATT

            *         *              *         *                             
       8257 TAATTATTATCTAT-TTTTAA--AAGAATGTAAAACAATTCAACTTAAAATCAATTATGAGATTA
          1 CAATTA-TA-GTATGTTTTAATTAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTA

                 *      
       8319 TAAAACCATTTA
         64 TAAAATCATTTA

       8331 NNNNNNNNNN


Statistics
Matches: 204,  Mismatches: 38, Indels: 9
        0.81            0.15        0.04

Matches are distributed among these distances:
 171   48  0.24
 172  142  0.70
 173   11  0.05
 174    3  0.01

ACGTcount: A:0.36, C:0.11, G:0.12, T:0.36


Consensus pattern (172 bp):   
CAATTATAGTATGTTTTAATTAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATA
AAATCATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATGGGTGACTATAAATAGACTTTTTCTCC
TCAATGAATGACTTTTTTTACACGTTTCGTAAGCCAAGTATT
Done.