Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018403048.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_713.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 11336
ACGTcount: A:0.24, C:0.08, G:0.08, T:0.24

Warning! 4170 characters in sequence are not A, C, G, or T


Found at i:1240 original size:172 final size:170

Alignment explanation


    Indices: 824--1242  Score: 428
    Period size: 172  Copynumber: 2.4  Consensus size: 170

        814 NNNNNNNNNN

                                *                 *  *                 *     
        824 AAACAAGCATTCATTGACAAGAAAAGTCTATTTAGAGTTACTCATTCCTTCAAAAAGCTCATTAC
          1 AAACAAGCATTCATTGACAAAAAAAGTCTATTTAGAGTCACCCATTCCTTC-AAAAGCTTATTAC

             * *                                      *                      
        889 TCGTTTTAAATAGTTTAATAATCTCATAATTGATTTTAAGCTGAATTTTTTTACATTTTTGATTA
         65 TAGCTTTAAATAGTTTAATAATCTCATAATTGATTTTAAGCTAAATTTTTTTACATTTTTGATTA

               * *                  *                
        954 AAATATACTATAATTGAATGTCTATCTCAAGAAACATGAAG
        130 AAACAGACTATAATTGAATGTCTACCTCAAGAAACATGAAG

              *        *             *                      *        *       
        995 AACCAAGCATTTATTGACAAAAAAAATCTATTTAGAGTCACCCATTCCCTCAAAAGGTTTATTAC
          1 AAACAAGCATTCATTGACAAAAAAAGTCTATTTAGAGTCACCCATTCCTTCAAAA-GCTTATTAC

                            *            *********   *                     * 
       1060 TAGCTTTAAATAGTTTTATAATCTCA-ANNNNNNNNNNAAGTTAAATTTTTTTACATTTTTTGGT
         65 TAGCTTTAAATAGTTTAATAATCTCATA-ATTGATTTTAAGCTAAATTTTTTTACA-TTTTTGAT

                     *         * * *     **      *      
       1124 TAAAACAGATTATAATTGATTTTTTACCTTGAGAAACGTGCAA-
        128 TAAAACAGACTATAATTGAATGTCTACCTCAAGAAACATG-AAG

                             *           *                                  *
       1167 AAACAAGCATTCATTGATAAAAAAAGTCTCTTTAGAGTCACCCATTCCTTCGAAAAGCTTATTAT
          1 AAACAAGCATTCATTGACAAAAAAAGTCTATTTAGAGTCACCCATTCCTTC-AAAAGCTTATTAC

             *         
       1232 TTGCTTTAAAT
         65 TAGCTTTAAAT

       1243 NNNNNNNNNN


Statistics
Matches: 200,  Mismatches: 43, Indels: 9
        0.79            0.17        0.04

Matches are distributed among these distances:
 170    5  0.03
 171   90  0.45
 172   99  0.50
 173    6  0.03

ACGTcount: A:0.37, C:0.14, G:0.10, T:0.37


Consensus pattern (170 bp):   
AAACAAGCATTCATTGACAAAAAAAGTCTATTTAGAGTCACCCATTCCTTCAAAAGCTTATTACT
AGCTTTAAATAGTTTAATAATCTCATAATTGATTTTAAGCTAAATTTTTTTACATTTTTGATTAA
AACAGACTATAATTGAATGTCTACCTCAAGAAACATGAAG
Done.