genome.fa.s58.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397311.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_253.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  81586

Tables:   1   

This is table  1  of  1  ( 43 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
577--2150	170	9.2	168	78	8	1259	40	10	13	34	1.79
577--2150	511	3.1	510	80	6	1507	40	10	13	34	1.79
577--2019	681	2.1	679	83	4	1764	40	10	13	34	1.80
583--2148	341	4.6	335	76	8	1290	40	10	13	34	1.79
2542--2858	172	1.9	161	81	2	303	36	11	13	35	1.81
4035--4384	172	2.0	172	83	0	439	37	10	15	36	1.82
4948--4997	21	2.4	21	96	0	91	26	18	0	56	1.42
10811--11146	170	2.0	169	85	5	464	39	13	15	32	1.86
12159--12642	171	2.9	160	75	10	319	36	9	14	34	1.79
13236--13560	169	2.0	158	81	5	294	38	8	13	36	1.76
14587--14620	14	2.4	14	85	0	50	17	8	23	50	1.74
16504--17437	170	5.5	169	76	7	712	39	11	12	34	1.79
19436--22079	172	15.4	172	71	5	1280	36	10	13	34	1.79
19886--22079	514	4.3	514	77	4	1733	36	10	13	35	1.79
19458--21445	343	5.8	343	72	7	1015	37	10	13	35	1.79
22841--23297	173	2.7	171	79	5	456	40	10	10	36	1.74
23930--25211	172	7.5	168	70	7	546	37	9	12	34	1.77
23930--24976	170	6.1	170	71	7	528	38	9	12	35	1.76
25743--26067	168	2.0	160	80	5	291	39	11	10	35	1.76
25910--26226	171	1.9	171	79	6	365	38	11	11	38	1.78
26982--27574	171	3.5	170	76	5	525	38	11	13	34	1.80
35605--36009	174	2.4	173	82	5	480	37	15	11	35	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35550--36135	169	3.4	168	79	6	613	36	14	9	39	1.79
36456--36766	172	1.8	171	84	2	426	37	12	12	36	1.81
48690--49295	172	3.5	171	78	6	535	36	11	13	36	1.81
50504--51466	171	5.6	170	77	8	577	40	11	13	34	1.80
50366--51506	341	3.3	338	78	6	1014	39	11	13	35	1.81
50366--51508	513	2.2	513	78	4	1191	39	11	13	35	1.81
50366--51585	172	7.2	170	78	6	1005	40	11	13	35	1.80
52062--52386	169	1.9	170	85	1	447	40	10	13	36	1.79
58337--58646	171	1.9	159	80	2	280	36	10	13	37	1.78
61540--64055	172	14.9	169	69	9	1066	37	10	12	34	1.79
61540--62712	171	6.9	170	76	8	899	38	11	13	36	1.81
62817--64055	172	7.3	171	79	7	1154	39	11	12	36	1.80
62813--64052	506	2.4	503	83	5	1472	39	11	12	36	1.80
69529--69836	170	1.9	160	82	1	312	37	11	13	34	1.80
70065--70411	172	2.0	172	80	8	386	40	10	13	34	1.80
72497--72828	171	2.0	159	78	10	337	36	13	9	37	1.77
73312--73692	170	2.2	170	80	3	428	34	14	9	38	1.78
74656--75573	170	5.4	168	77	5	731	36	13	10	39	1.79
76092--76425	170	2.0	170	88	4	496	34	13	11	40	1.81
76588--78395	171	10.7	172	71	8	906	35	13	10	37	1.79
79490--80029	171	3.2	169	82	5	552	36	12	12	38	1.81

Tables:   1

The End!