Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018403053.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_718.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3149
ACGTcount: A:0.14, C:0.04, G:0.05, T:0.14

Warning! 1982 characters in sequence are not A, C, G, or T


Found at i:1538 original size:20 final size:21

Alignment explanation


    Indices: 1498--1539  Score: 59
    Period size: 21  Copynumber: 2.0  Consensus size: 21

       1488 NNNNNNNGGG

                *       *        
       1498 TGACTATAAATGGACTTTTCT
          1 TGACAATAAATGCACTTTTCT

                                 
       1519 TGACAATAAATGCA-TTTTCT
          1 TGACAATAAATGCACTTTTCT

             
       1539 T
          1 T

       1540 CATGATTCTC


Statistics
Matches: 19,  Mismatches: 2, Indels: 1
        0.86            0.09        0.05

Matches are distributed among these distances:
  20    7  0.37
  21   12  0.63

ACGTcount: A:0.31, C:0.14, G:0.12, T:0.43


Consensus pattern (21 bp):   
TGACAATAAATGCACTTTTCT
Done.