Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018403058.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_722.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2379
ACGTcount: A:0.14, C:0.05, G:0.06, T:0.17

Warning! 1365 characters in sequence are not A, C, G, or T


Found at i:317 original size:31 final size:31

Alignment explanation


    Indices: 279--346  Score: 82
    Period size: 31  Copynumber: 2.2  Consensus size: 31

        269 ATAAATAGAC

                             * *   *       
        279 ATTTCTTGCCAACGAATGCTTTTTTCTTCAT
          1 ATTTCTTGCCAACGAATACATTTGTCTTCAT

                     *  *                  
        310 ATTTCTTGCTAATGAATACATTTGTCTTCAT
          1 ATTTCTTGCCAACGAATACATTTGTCTTCAT

            *     
        341 GTTTCT
          1 ATTTCT

        347 CGAGATAGAT


Statistics
Matches: 31,  Mismatches: 6, Indels: 0
        0.84            0.16        0.00

Matches are distributed among these distances:
  31   31  1.00

ACGTcount: A:0.21, C:0.19, G:0.10, T:0.50


Consensus pattern (31 bp):   
ATTTCTTGCCAACGAATACATTTGTCTTCAT
Done.